Wall clock time and date at job start Wed Apr 1 2020 00:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.77955 * 2 1 4 4 C 1.54324 * 110.71890 * 123.23889 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.47837 * 4 2 1 6 6 C 1.36946 * 125.64749 * 181.10549 * 5 4 2 7 7 H 1.08000 * 119.99920 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99867 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99829 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47348 * 59.99174 * 10 8 6 12 12 H 1.48492 * 109.47116 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46964 * 299.99484 * 10 8 6 14 14 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 15 15 C 1.54909 * 104.83995 * 335.74644 * 14 5 4 16 16 H 1.09006 * 111.00238 * 155.16698 * 15 14 5 17 17 N 1.46494 * 111.04301 * 279.00829 * 15 14 5 18 18 C 1.34780 * 119.99752 * 267.21576 * 17 15 14 19 19 O 1.21278 * 120.00442 * 359.97438 * 18 17 15 20 20 C 1.50703 * 119.99547 * 179.97438 * 18 17 15 21 21 N 1.46503 * 109.46612 * 179.97438 * 20 18 17 22 22 C 1.36830 * 125.06285 * 264.69368 * 21 20 18 23 23 C 1.34245 * 109.92980 * 179.88182 * 22 21 20 24 24 C 1.46484 * 106.99330 * 0.37521 * 23 22 21 25 25 C 1.39637 * 134.02770 * 179.79803 * 24 23 22 26 26 C 1.36625 * 119.76237 * 179.97438 * 25 24 23 27 27 C 1.38828 * 120.52771 * 359.97438 * 26 25 24 28 28 C 1.37751 * 120.66942 * 0.02562 * 27 26 25 29 29 C 1.37690 * 125.06409 * 85.00601 * 21 20 18 30 30 H 1.08993 * 109.46725 * 298.21689 * 1 2 3 31 31 H 1.09002 * 109.46930 * 58.21518 * 1 2 3 32 32 H 1.08996 * 109.47021 * 178.21404 * 1 2 3 33 33 H 1.09003 * 109.46999 * 181.78711 * 3 2 1 34 34 H 1.08997 * 109.47276 * 301.78407 * 3 2 1 35 35 H 1.08996 * 109.47248 * 61.78898 * 3 2 1 36 36 H 1.09002 * 109.88322 * 259.97367 * 4 2 1 37 37 H 1.09000 * 109.88025 * 20.98532 * 4 2 1 38 38 H 0.96998 * 119.99524 * 180.02562 * 9 8 6 39 39 H 1.09003 * 110.29227 * 216.94505 * 14 5 4 40 40 H 1.08996 * 110.53057 * 94.67717 * 14 5 4 41 41 H 0.96994 * 120.00233 * 87.21085 * 17 15 14 42 42 H 1.08993 * 109.47416 * 299.99904 * 20 18 17 43 43 H 1.08996 * 109.47139 * 60.00603 * 20 18 17 44 44 H 1.08002 * 125.03838 * 0.02562 * 22 21 20 45 45 H 1.08001 * 126.50006 * 180.14889 * 23 22 21 46 46 H 1.08003 * 120.11547 * 359.94749 * 25 24 23 47 47 H 1.07998 * 119.73252 * 179.97438 * 26 25 24 48 48 H 1.08006 * 119.66451 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.10977 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2438 -1.5534 0.7416 6 6 4.0005 -2.4008 1.5064 7 1 3.7556 -2.5528 2.5472 8 6 5.0830 -3.0633 0.9441 9 7 5.3817 -2.8776 -0.3242 10 14 6.1155 -4.2185 1.9874 11 1 5.2583 -5.3120 2.5116 12 1 7.2026 -4.7969 1.1575 13 1 6.7064 -3.4653 3.1228 14 6 3.4633 -1.2498 -0.6875 15 6 2.0790 -0.7955 -1.2138 16 1 2.1850 -0.1518 -2.0871 17 7 1.2266 -1.9483 -1.5150 18 6 1.2022 -2.4609 -2.7612 19 8 1.8855 -1.9677 -3.6334 20 6 0.3258 -3.6471 -3.0709 21 7 0.4762 -4.0101 -4.4823 22 6 -0.3474 -3.5946 -5.4929 23 6 0.0701 -4.1045 -6.6624 24 6 1.2529 -4.9199 -6.3760 25 6 2.1132 -5.6909 -7.1604 26 6 3.1569 -6.3501 -6.5750 27 6 3.3696 -6.2593 -5.2061 28 6 2.5332 -5.5043 -4.4136 29 6 1.4638 -4.8250 -4.9885 30 1 -0.3632 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3633 -1.0271 -0.0320 33 1 3.1621 1.4057 -0.0320 34 1 1.6957 1.9622 -0.8735 35 1 1.7476 1.9425 0.9055 36 1 2.3741 -0.1024 1.9978 37 1 1.3120 -1.4739 1.5792 38 1 6.1379 -3.3409 -0.7172 39 1 3.7960 -2.1426 -1.2169 40 1 4.1936 -0.4486 -0.8002 41 1 0.6799 -2.3426 -0.8176 42 1 0.6203 -4.4897 -2.4453 43 1 -0.7148 -3.3921 -2.8707 44 1 -1.2049 -2.9499 -5.3685 45 1 -0.3825 -3.9467 -7.6302 46 1 1.9538 -5.7662 -8.2259 47 1 3.8218 -6.9467 -7.1820 48 1 4.1993 -6.7859 -4.7579 49 1 2.7068 -5.4403 -3.3496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977628453.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:06 Heat of formation + Delta-G solvation = 40.715852 kcal Electronic energy + Delta-G solvation = -30446.095976 eV Core-core repulsion = 26566.782298 eV Total energy + Delta-G solvation = -3879.313678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.32666 -41.09449 -39.43639 -37.82025 -35.68252 -34.60302 -33.80499 -32.61808 -31.47820 -30.02010 -29.70839 -28.33798 -27.63514 -27.22735 -25.02883 -23.63830 -22.72051 -22.31443 -21.60038 -21.02425 -20.11863 -18.73256 -18.42234 -18.17443 -17.38226 -17.22341 -16.63381 -16.30552 -16.05029 -15.79812 -15.52687 -15.34154 -14.87753 -14.78303 -14.66883 -14.52778 -14.17718 -13.91929 -13.73644 -13.68275 -13.50634 -13.12384 -13.05975 -13.02872 -12.83121 -12.62696 -12.58319 -12.49649 -12.48122 -12.17773 -11.80469 -11.77406 -11.75488 -11.47641 -11.37991 -11.07584 -10.78383 -10.53035 -9.99196 -9.08585 -8.86958 -8.55686 -7.77730 -5.22775 0.23071 0.69860 1.42815 1.45291 1.52214 1.52873 1.63982 1.92970 2.36680 2.47018 3.01586 3.32345 3.55502 3.64048 3.70187 3.76700 3.82878 3.95741 4.00190 4.06374 4.09954 4.15893 4.27865 4.40561 4.49026 4.56920 4.59236 4.71318 4.79954 4.81551 4.87444 4.92077 4.93834 5.02044 5.07946 5.09271 5.17583 5.19085 5.27861 5.32355 5.47009 5.52026 5.57399 5.65404 5.69375 5.79913 5.86830 5.91535 6.27568 6.29623 6.37036 6.59499 7.06517 7.25055 7.77073 8.41170 9.22621 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.004047 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.326647 B = 6916.464934 C = 9193.056761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 C -0.128 4.128 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.234 4.234 7 H 0.085 0.915 8 C -0.065 4.065 9 N -0.948 5.948 10 Si 0.974 3.026 11 H -0.273 1.273 12 H -0.301 1.301 13 H -0.279 1.279 14 C 0.155 3.845 15 C 0.139 3.861 16 H 0.076 0.924 17 N -0.688 5.688 18 C 0.489 3.511 19 O -0.577 6.577 20 C 0.096 3.904 21 N -0.473 5.473 22 C 0.060 3.940 23 C -0.219 4.219 24 C -0.132 4.132 25 C -0.082 4.082 26 C -0.152 4.152 27 C -0.114 4.114 28 C -0.147 4.147 29 C 0.081 3.919 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.040 0.960 38 H 0.242 0.758 39 H 0.066 0.934 40 H -0.020 1.020 41 H 0.411 0.589 42 H 0.120 0.880 43 H 0.170 0.830 44 H 0.205 0.795 45 H 0.171 0.829 46 H 0.146 0.854 47 H 0.147 0.853 48 H 0.132 0.868 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.465 -0.857 -7.446 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C -0.186 4.186 4 C 0.012 3.988 5 N -0.343 5.343 6 C -0.363 4.363 7 H 0.103 0.897 8 C -0.258 4.258 9 N -0.598 5.598 10 Si 0.803 3.197 11 H -0.199 1.199 12 H -0.227 1.227 13 H -0.205 1.205 14 C 0.028 3.972 15 C 0.033 3.967 16 H 0.094 0.906 17 N -0.340 5.340 18 C 0.275 3.725 19 O -0.456 6.456 20 C -0.029 4.029 21 N -0.156 5.156 22 C -0.064 4.064 23 C -0.243 4.243 24 C -0.137 4.137 25 C -0.100 4.100 26 C -0.171 4.171 27 C -0.133 4.133 28 C -0.168 4.168 29 C -0.025 4.025 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.084 0.916 40 H -0.002 1.002 41 H 0.248 0.752 42 H 0.138 0.862 43 H 0.187 0.813 44 H 0.221 0.779 45 H 0.188 0.812 46 H 0.164 0.836 47 H 0.165 0.835 48 H 0.150 0.850 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.888 -0.530 -7.722 18.577 hybrid contribution 1.549 -0.600 1.103 1.994 sum -15.339 -1.130 -6.619 16.744 Atomic orbital electron populations 1.21683 0.90706 1.02592 1.03048 1.21823 0.97700 0.95124 0.92705 1.21702 0.99826 0.93999 1.03027 1.21659 0.88925 0.93118 0.95065 1.44735 1.31899 1.50271 1.07362 1.19405 1.06714 1.16688 0.93458 0.89716 1.25583 1.00286 1.02593 0.97316 1.70107 1.30064 1.47050 1.12599 0.85215 0.78114 0.78982 0.77424 1.19886 1.22723 1.20476 1.21969 0.91829 0.98009 0.85380 1.22092 0.90931 0.86862 0.96858 0.90612 1.45617 1.45152 1.32530 1.10660 1.21504 0.83097 0.85390 0.82484 1.90737 1.44581 1.62354 1.47942 1.21772 1.03467 0.96342 0.81314 1.43583 1.24228 1.40914 1.06892 1.22427 0.97255 1.00582 0.86157 1.21977 0.98492 1.04820 0.99031 1.19687 0.99330 1.02644 0.92035 1.20602 0.93712 0.95547 1.00160 1.20918 0.99436 1.02355 0.94411 1.21056 0.98769 0.98821 0.94635 1.20181 0.95880 1.01217 0.99519 1.18451 0.92987 0.96956 0.94068 0.90619 0.91481 0.91717 0.95116 0.91180 0.90318 0.95930 0.94249 0.94866 0.91560 1.00197 0.75198 0.86247 0.81311 0.77868 0.81168 0.83608 0.83511 0.85014 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.16 71.98 0.59 -1.88 16 2 C -0.07 -2.16 0.80 -50.99 -0.04 -2.20 16 3 C -0.13 -3.60 8.44 71.98 0.61 -2.99 16 4 C 0.14 5.09 6.40 86.73 0.56 5.64 16 5 N -0.62 -30.47 3.41 -691.17 -2.35 -32.82 16 6 C -0.23 -12.79 10.28 84.03 0.86 -11.92 16 7 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 8 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 9 N -0.95 -58.53 10.11 21.65 0.22 -58.31 16 10 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 14 C 0.15 7.83 5.29 86.79 0.46 8.28 16 15 C 0.14 5.20 2.67 46.38 0.12 5.33 16 16 H 0.08 3.04 7.44 -2.38 -0.02 3.02 16 17 N -0.69 -21.63 4.52 -435.96 -1.97 -23.60 16 18 C 0.49 16.30 7.90 87.66 0.69 17.00 16 19 O -0.58 -25.55 16.06 -3.02 -0.05 -25.60 16 20 C 0.10 2.26 6.48 85.63 0.56 2.81 16 21 N -0.47 -13.30 2.27 -519.99 -1.18 -14.48 16 22 C 0.06 1.36 11.27 83.00 0.94 2.30 16 23 C -0.22 -5.35 11.08 23.51 0.26 -5.09 16 24 C -0.13 -4.02 6.37 -20.20 -0.13 -4.15 16 25 C -0.08 -2.19 10.05 22.23 0.22 -1.97 16 26 C -0.15 -4.07 9.97 22.03 0.22 -3.85 16 27 C -0.11 -3.54 10.01 22.30 0.22 -3.31 16 28 C -0.15 -5.23 10.00 22.37 0.22 -5.00 16 29 C 0.08 2.73 6.80 39.03 0.27 3.00 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.15 6.34 -2.39 -0.02 1.14 16 33 H 0.03 1.05 7.45 -2.39 -0.02 1.03 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.02 0.85 7.84 -2.39 -0.02 0.84 16 37 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 38 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.07 3.99 5.89 -2.39 -0.01 3.98 16 40 H -0.02 -1.13 7.72 -2.39 -0.02 -1.14 16 41 H 0.41 10.53 7.13 -92.71 -0.66 9.87 16 42 H 0.12 2.69 8.14 -2.39 -0.02 2.68 16 43 H 0.17 2.07 8.11 -2.39 -0.02 2.05 16 44 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 45 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 47 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 48 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 49 H 0.10 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -81.44 395.62 4.08 -77.36 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.29 Total: 30.64 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 7.09 Total: -1.26 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.28 Total: -129.21 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -81.44 4.08 -77.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977628453.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.079 kcal (2) G-P(sol) polarization free energy of solvation -81.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds