Wall clock time and date at job start Wed Apr 1 2020 00:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35735 * 120.33634 * 2 1 4 4 C 1.40830 * 119.72113 * 180.02562 * 3 2 1 5 5 C 1.34543 * 120.58215 * 359.97438 * 4 3 2 6 6 N 1.37444 * 120.74204 * 0.02562 * 5 4 3 7 7 C 1.35121 * 131.28401 * 180.28810 * 6 5 4 8 8 C 1.38065 * 108.77005 * 180.11988 * 7 6 5 9 9 C 1.47497 * 126.37625 * 179.86517 * 8 7 6 10 10 O 1.21593 * 120.00136 * 179.68788 * 9 8 7 11 11 N 1.34777 * 119.99601 * 359.68479 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72395 * 11 9 8 13 13 H 1.08999 * 109.47480 * 35.27807 * 12 11 9 14 14 C 1.52999 * 109.47136 * 275.27771 * 12 11 9 15 15 C 1.53001 * 109.47283 * 299.99920 * 14 12 11 16 16 C 1.52996 * 109.46993 * 300.00062 * 15 14 12 17 17 C 1.53001 * 109.47349 * 60.00188 * 16 15 14 18 18 H 1.08991 * 109.47002 * 59.99317 * 17 16 15 19 19 N 1.46491 * 109.47219 * 180.02562 * 17 16 15 20 20 C 1.36945 * 120.00066 * 274.99530 * 19 17 16 21 21 H 1.08007 * 119.99611 * 0.02562 * 20 19 17 22 22 C 1.38808 * 120.00368 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00131 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99749 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.47320 * 90.00139 * 24 22 20 26 26 H 1.48501 * 109.47059 * 209.99474 * 24 22 20 27 27 H 1.48496 * 109.47439 * 329.99650 * 24 22 20 28 28 C 1.52999 * 109.47493 * 155.28120 * 12 11 9 29 29 C 1.41203 * 107.25300 * 359.60378 * 8 7 6 30 30 C 1.37946 * 119.81029 * 359.97438 * 6 5 4 31 31 H 1.08996 * 109.47051 * 269.95681 * 1 2 3 32 32 H 1.08996 * 109.46927 * 29.95505 * 1 2 3 33 33 H 1.09000 * 109.47201 * 149.95556 * 1 2 3 34 34 H 1.07997 * 120.14271 * 0.04669 * 3 2 1 35 35 H 1.07998 * 119.70907 * 180.02562 * 4 3 2 36 36 H 1.07992 * 119.62789 * 180.02562 * 5 4 3 37 37 H 1.08001 * 125.62129 * 359.96391 * 7 6 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47488 * 60.00276 * 14 12 11 40 40 H 1.09005 * 109.47368 * 180.02562 * 14 12 11 41 41 H 1.08997 * 109.47096 * 179.97438 * 15 14 12 42 42 H 1.08996 * 109.47210 * 60.00152 * 15 14 12 43 43 H 1.09005 * 109.47245 * 299.99464 * 16 15 14 44 44 H 1.09006 * 109.46869 * 180.02562 * 16 15 14 45 45 H 0.97000 * 120.00700 * 94.99462 * 19 17 16 46 46 H 0.97005 * 119.99833 * 180.02562 * 23 22 20 47 47 H 1.08991 * 109.47925 * 180.02562 * 28 12 11 48 48 H 1.09009 * 109.46506 * 300.00089 * 28 12 11 49 49 H 1.07993 * 126.56916 * 180.27897 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6008 1.1564 -0.0005 5 6 4.2729 -0.0092 -0.0006 6 7 3.6004 -1.2079 -0.0006 7 6 4.0498 -2.4822 0.0045 8 6 2.9648 -3.3359 -0.0008 9 6 3.0116 -4.8101 -0.0007 10 8 1.9784 -5.4512 -0.0001 11 7 4.1996 -5.4465 -0.0014 12 6 4.2462 -6.9108 0.0048 13 1 3.4175 -7.3032 -0.5846 14 6 4.1339 -7.4185 1.4437 15 6 5.2971 -6.8678 2.2711 16 6 6.6211 -7.3385 1.6661 17 6 6.7335 -6.8308 0.2272 18 1 6.6988 -5.7414 0.2226 19 7 8.0010 -7.2820 -0.3523 20 6 9.1445 -6.5573 -0.1464 21 1 9.1120 -5.6532 0.4436 22 6 10.3457 -6.9851 -0.6951 23 7 11.4446 -6.2883 -0.4976 24 14 10.4020 -8.5492 -1.7149 25 1 10.1540 -8.2192 -3.1415 26 1 11.7389 -9.1812 -1.5783 27 1 9.3582 -9.4905 -1.2358 28 6 5.5703 -7.3816 -0.6001 29 6 1.8018 -2.5351 -0.0003 30 6 2.2210 -1.2204 0.0000 31 1 -0.3633 -0.0008 1.0276 32 1 -0.3633 0.8904 -0.5131 33 1 -0.3633 -0.8896 -0.5145 34 1 1.6605 2.1113 0.0008 35 1 4.1461 2.0886 -0.0001 36 1 5.3528 -0.0028 -0.0006 37 1 5.0869 -2.7834 0.0093 38 1 5.0239 -4.9351 -0.0016 39 1 3.1906 -7.0832 1.8748 40 1 4.1690 -8.5080 1.4484 41 1 5.2168 -7.2291 3.2963 42 1 5.2625 -5.7784 2.2666 43 1 6.6558 -8.4280 1.6708 44 1 7.4498 -6.9466 2.2559 45 1 8.0304 -8.0942 -0.8819 46 1 12.2840 -6.5871 -0.8814 47 1 5.6048 -8.4710 -0.5960 48 1 5.6503 -7.0198 -1.6253 49 1 0.7800 -2.8845 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981454086.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:51 Heat of formation + Delta-G solvation = 36.362838 kcal Electronic energy + Delta-G solvation = -29376.375727 eV Core-core repulsion = 25496.873288 eV Total energy + Delta-G solvation = -3879.502439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.44014 -39.93538 -37.97549 -36.79381 -34.60124 -34.32715 -33.04721 -31.39046 -30.81241 -29.66849 -28.62380 -28.18540 -27.17468 -24.19643 -23.42300 -22.25831 -22.11332 -21.74981 -20.94461 -20.10120 -18.91501 -18.03770 -17.57476 -17.13146 -16.25212 -15.79273 -15.58320 -15.31168 -15.23761 -14.68362 -14.50616 -14.40826 -13.90059 -13.78544 -13.65551 -13.51629 -13.44936 -13.05431 -12.83531 -12.65064 -12.39515 -12.24299 -12.03887 -11.85031 -11.78812 -11.76668 -11.36661 -11.27181 -10.98520 -10.92059 -10.43485 -10.36756 -10.25231 -10.08986 -9.87177 -9.70729 -9.60528 -8.98110 -8.90414 -8.65856 -7.57038 -7.31012 -5.81599 -3.17083 0.50218 1.12061 2.01772 2.44629 3.20356 3.34037 3.35095 3.38029 3.43099 3.58229 4.20871 4.40178 4.55131 4.55506 4.65940 4.70813 4.89749 4.92865 5.06792 5.11301 5.15832 5.20650 5.27621 5.30165 5.43879 5.49582 5.54514 5.61852 5.62533 5.67072 5.70733 5.79262 5.85341 5.91049 5.98317 6.04467 6.08361 6.10904 6.17999 6.26438 6.41784 6.43393 6.52081 6.63226 6.64545 6.68757 6.84878 6.98848 7.01942 7.68708 7.93909 8.37535 8.38383 9.16162 9.89087 10.08813 11.36662 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.002719 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.208214 B =10296.799941 C =11784.613233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.041 4.041 3 C -0.143 4.143 4 C -0.131 4.131 5 C 0.036 3.964 6 N -0.336 5.336 7 C -0.005 4.005 8 C -0.168 4.168 9 C 0.588 3.412 10 O -0.545 6.545 11 N -0.715 5.715 12 C 0.154 3.846 13 H 0.086 0.914 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.137 4.137 17 C 0.186 3.814 18 H 0.049 0.951 19 N -0.749 5.749 20 C -0.243 4.243 21 H 0.089 0.911 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.138 4.138 29 C -0.134 4.134 30 C 0.025 3.975 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.164 0.836 37 H 0.179 0.821 38 H 0.401 0.599 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.554 12.857 2.087 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.042 4.042 3 C -0.163 4.163 4 C -0.151 4.151 5 C -0.082 4.082 6 N 0.001 4.999 7 C -0.139 4.139 8 C -0.175 4.175 9 C 0.375 3.625 10 O -0.424 6.424 11 N -0.367 5.367 12 C 0.049 3.951 13 H 0.104 0.896 14 C -0.167 4.167 15 C -0.153 4.153 16 C -0.177 4.177 17 C 0.076 3.924 18 H 0.067 0.933 19 N -0.391 5.391 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.177 4.177 29 C -0.158 4.158 30 C -0.079 4.079 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.163 0.837 36 H 0.181 0.819 37 H 0.196 0.804 38 H 0.237 0.763 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.875 12.719 2.130 24.537 hybrid contribution 0.962 -0.809 -0.658 1.419 sum -19.913 11.910 1.471 23.250 Atomic orbital electron populations 1.20732 0.89655 1.03421 1.02928 1.19366 0.96442 0.90131 0.98226 1.20808 0.93702 0.97838 1.03954 1.20705 0.94782 0.97113 1.02502 1.21734 0.98636 0.83105 1.04762 1.41258 1.07169 1.05390 1.46053 1.22246 0.99724 0.80590 1.11357 1.19666 0.93273 0.92765 1.11837 1.17398 0.83639 0.85729 0.75740 1.90744 1.33386 1.67496 1.50760 1.46049 1.08141 1.07685 1.74791 1.20910 0.98388 0.79131 0.96688 0.89627 1.21912 0.98849 1.00656 0.95258 1.21495 0.94979 1.00502 0.98371 1.22249 0.95903 1.00782 0.98788 1.20114 0.84847 0.96783 0.90652 0.93301 1.42797 1.04748 1.29011 1.62545 1.19043 0.85017 1.05548 1.27658 0.89291 1.24670 0.95464 0.98422 1.00587 1.69699 0.98939 1.40030 1.49525 0.86555 0.76850 0.84370 0.80769 1.21117 1.21813 1.20277 1.22173 0.93667 1.01693 1.00125 1.21030 0.98657 0.88764 1.07344 1.18637 0.81822 0.94959 1.12505 0.90485 0.90932 0.90788 0.85000 0.83666 0.81878 0.80419 0.76255 0.91854 0.91222 0.92720 0.92437 0.92654 0.91655 0.80616 0.93064 0.90609 0.91105 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 9.91 36.01 0.36 -0.36 16 2 C -0.04 -0.37 5.91 -104.32 -0.62 -0.99 16 3 C -0.14 -1.10 9.72 -39.50 -0.38 -1.48 16 4 C -0.13 -0.96 9.97 -39.91 -0.40 -1.35 16 5 C 0.04 0.31 10.89 -16.34 -0.18 0.13 16 6 N -0.34 -3.71 2.92 -60.42 -0.18 -3.89 16 7 C -0.01 -0.06 11.09 -16.17 -0.18 -0.24 16 8 C -0.17 -2.22 6.12 -105.06 -0.64 -2.86 16 9 C 0.59 8.65 7.78 -12.49 -0.10 8.55 16 10 O -0.55 -9.60 16.58 5.28 0.09 -9.52 16 11 N -0.71 -9.50 4.22 -54.86 -0.23 -9.73 16 12 C 0.15 2.09 2.78 -67.93 -0.19 1.90 16 13 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 14 C -0.13 -1.69 5.60 -26.73 -0.15 -1.84 16 15 C -0.12 -1.58 5.77 -26.73 -0.15 -1.74 16 16 C -0.14 -2.26 5.50 -26.73 -0.15 -2.41 16 17 C 0.19 3.26 2.60 -67.93 -0.18 3.08 16 18 H 0.05 0.86 6.44 -51.93 -0.33 0.53 16 19 N -0.75 -16.74 4.92 -53.43 -0.26 -17.00 16 20 C -0.24 -6.54 10.41 -15.06 -0.16 -6.69 16 21 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 22 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 23 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 24 Si 0.88 21.68 27.74 -169.99 -4.71 16.97 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 28 C -0.14 -2.03 5.07 -26.73 -0.14 -2.16 16 29 C -0.13 -1.68 10.27 -38.55 -0.40 -2.08 16 30 C 0.02 0.29 6.60 -84.00 -0.55 -0.27 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.07 0.49 7.70 -51.93 -0.40 0.09 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.18 1.66 7.42 -52.49 -0.39 1.27 16 38 H 0.40 4.97 5.76 -40.82 -0.24 4.73 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.79 7.60 -51.93 -0.39 0.39 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.36 8.04 5.66 -40.82 -0.23 7.81 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 49 H 0.15 1.79 7.93 -52.49 -0.42 1.38 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -33.85 392.43 -10.36 -44.21 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -7.46 Total: 11.72 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -4.29 Total: -10.78 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.10 Total: -58.51 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.85 -10.36 -44.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981454086.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.574 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds