Wall clock time and date at job start Wed Apr 1 2020 00:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35735 * 120.33634 * 2 1 4 4 C 1.40830 * 119.72113 * 180.02562 * 3 2 1 5 5 C 1.34543 * 120.58215 * 359.97438 * 4 3 2 6 6 N 1.37444 * 120.74204 * 0.02562 * 5 4 3 7 7 C 1.35121 * 131.28401 * 180.28810 * 6 5 4 8 8 C 1.38065 * 108.77005 * 180.11988 * 7 6 5 9 9 C 1.47497 * 126.37625 * 179.86517 * 8 7 6 10 10 O 1.21593 * 120.00136 * 179.68788 * 9 8 7 11 11 N 1.34777 * 119.99601 * 359.68479 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72395 * 11 9 8 13 13 H 1.08999 * 109.47480 * 35.27807 * 12 11 9 14 14 C 1.52999 * 109.47136 * 275.27771 * 12 11 9 15 15 C 1.53001 * 109.47283 * 299.99920 * 14 12 11 16 16 C 1.52996 * 109.46993 * 300.00062 * 15 14 12 17 17 C 1.53001 * 109.47349 * 60.00188 * 16 15 14 18 18 H 1.08991 * 109.47002 * 59.99317 * 17 16 15 19 19 N 1.46491 * 109.47219 * 180.02562 * 17 16 15 20 20 C 1.36945 * 120.00066 * 274.99530 * 19 17 16 21 21 H 1.08007 * 119.99611 * 0.02562 * 20 19 17 22 22 C 1.38808 * 120.00368 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00131 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99749 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.47320 * 90.00139 * 24 22 20 26 26 H 1.48501 * 109.47059 * 209.99474 * 24 22 20 27 27 H 1.48496 * 109.47439 * 329.99650 * 24 22 20 28 28 C 1.52999 * 109.47493 * 155.28120 * 12 11 9 29 29 C 1.41203 * 107.25300 * 359.60378 * 8 7 6 30 30 C 1.37946 * 119.81029 * 359.97438 * 6 5 4 31 31 H 1.08996 * 109.47051 * 269.95681 * 1 2 3 32 32 H 1.08996 * 109.46927 * 29.95505 * 1 2 3 33 33 H 1.09000 * 109.47201 * 149.95556 * 1 2 3 34 34 H 1.07997 * 120.14271 * 0.04669 * 3 2 1 35 35 H 1.07998 * 119.70907 * 180.02562 * 4 3 2 36 36 H 1.07992 * 119.62789 * 180.02562 * 5 4 3 37 37 H 1.08001 * 125.62129 * 359.96391 * 7 6 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47488 * 60.00276 * 14 12 11 40 40 H 1.09005 * 109.47368 * 180.02562 * 14 12 11 41 41 H 1.08997 * 109.47096 * 179.97438 * 15 14 12 42 42 H 1.08996 * 109.47210 * 60.00152 * 15 14 12 43 43 H 1.09005 * 109.47245 * 299.99464 * 16 15 14 44 44 H 1.09006 * 109.46869 * 180.02562 * 16 15 14 45 45 H 0.97000 * 120.00700 * 94.99462 * 19 17 16 46 46 H 0.97005 * 119.99833 * 180.02562 * 23 22 20 47 47 H 1.08991 * 109.47925 * 180.02562 * 28 12 11 48 48 H 1.09009 * 109.46506 * 300.00089 * 28 12 11 49 49 H 1.07993 * 126.56916 * 180.27897 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6008 1.1564 -0.0005 5 6 4.2729 -0.0092 -0.0006 6 7 3.6004 -1.2079 -0.0006 7 6 4.0498 -2.4822 0.0045 8 6 2.9648 -3.3359 -0.0008 9 6 3.0116 -4.8101 -0.0007 10 8 1.9784 -5.4512 -0.0001 11 7 4.1996 -5.4465 -0.0014 12 6 4.2462 -6.9108 0.0048 13 1 3.4175 -7.3032 -0.5846 14 6 4.1339 -7.4185 1.4437 15 6 5.2971 -6.8678 2.2711 16 6 6.6211 -7.3385 1.6661 17 6 6.7335 -6.8308 0.2272 18 1 6.6988 -5.7414 0.2226 19 7 8.0010 -7.2820 -0.3523 20 6 9.1445 -6.5573 -0.1464 21 1 9.1120 -5.6532 0.4436 22 6 10.3457 -6.9851 -0.6951 23 7 11.4446 -6.2883 -0.4976 24 14 10.4020 -8.5492 -1.7149 25 1 10.1540 -8.2192 -3.1415 26 1 11.7389 -9.1812 -1.5783 27 1 9.3582 -9.4905 -1.2358 28 6 5.5703 -7.3816 -0.6001 29 6 1.8018 -2.5351 -0.0003 30 6 2.2210 -1.2204 0.0000 31 1 -0.3633 -0.0008 1.0276 32 1 -0.3633 0.8904 -0.5131 33 1 -0.3633 -0.8896 -0.5145 34 1 1.6605 2.1113 0.0008 35 1 4.1461 2.0886 -0.0001 36 1 5.3528 -0.0028 -0.0006 37 1 5.0869 -2.7834 0.0093 38 1 5.0239 -4.9351 -0.0016 39 1 3.1906 -7.0832 1.8748 40 1 4.1690 -8.5080 1.4484 41 1 5.2168 -7.2291 3.2963 42 1 5.2625 -5.7784 2.2666 43 1 6.6558 -8.4280 1.6708 44 1 7.4498 -6.9466 2.2559 45 1 8.0304 -8.0942 -0.8819 46 1 12.2840 -6.5871 -0.8814 47 1 5.6048 -8.4710 -0.5960 48 1 5.6503 -7.0198 -1.6253 49 1 0.7800 -2.8845 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981454086.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:50 Heat of formation + Delta-G solvation = 17.199436 kcal Electronic energy + Delta-G solvation = -29377.206714 eV Core-core repulsion = 25496.873288 eV Total energy + Delta-G solvation = -3880.333426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.23816 -41.10619 -39.21662 -37.55733 -36.23710 -35.03211 -34.43799 -33.23480 -31.72600 -30.74398 -29.93593 -29.22913 -27.79370 -25.46045 -24.97285 -23.34357 -22.95580 -22.61495 -22.38773 -21.15382 -20.26949 -19.48606 -18.79946 -18.01131 -17.07976 -16.82766 -16.59571 -16.54698 -16.35248 -16.10204 -15.76455 -15.36768 -15.12424 -14.92270 -14.82512 -14.64638 -14.28248 -14.21856 -14.11653 -13.72549 -13.67709 -13.22666 -13.07094 -13.03106 -12.96574 -12.83666 -12.57141 -12.36727 -12.35406 -12.06197 -12.00288 -11.80209 -11.60939 -11.51411 -11.10254 -11.06065 -11.02613 -10.87400 -10.06432 -9.54574 -9.27424 -8.32475 -7.99537 -5.31909 -0.20814 0.35900 1.08128 1.40398 1.42453 1.49761 1.68702 2.27099 2.47996 2.50920 2.55636 3.32083 3.46633 3.51336 3.74325 3.81734 3.88929 3.93580 4.00251 4.08890 4.15280 4.19736 4.29038 4.34700 4.40777 4.48591 4.54208 4.66927 4.71328 4.74584 4.79981 4.81303 4.83702 4.91459 4.96640 5.10397 5.13827 5.17882 5.21729 5.23987 5.34864 5.38545 5.46089 5.50120 5.51492 5.65157 5.68078 5.81286 5.88697 6.24738 6.26823 6.58692 7.11444 7.26172 7.88305 8.06561 9.21871 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.002719 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.208214 B =10296.799941 C =11784.613233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.064 4.064 3 C -0.134 4.134 4 C -0.123 4.123 5 C 0.012 3.988 6 N -0.339 5.339 7 C -0.010 4.010 8 C -0.191 4.191 9 C 0.589 3.411 10 O -0.580 6.580 11 N -0.708 5.708 12 C 0.158 3.842 13 H 0.085 0.915 14 C -0.122 4.122 15 C -0.106 4.106 16 C -0.128 4.128 17 C 0.180 3.820 18 H 0.046 0.954 19 N -0.752 5.752 20 C -0.221 4.221 21 H 0.060 0.940 22 C -0.066 4.066 23 N -0.985 5.985 24 Si 0.951 3.049 25 H -0.280 1.280 26 H -0.301 1.301 27 H -0.251 1.251 28 C -0.125 4.125 29 C -0.161 4.161 30 C 0.020 3.980 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.162 0.838 35 H 0.180 0.820 36 H 0.185 0.815 37 H 0.193 0.807 38 H 0.406 0.594 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.365 0.635 46 H 0.256 0.744 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.903 13.605 1.819 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.065 4.065 3 C -0.154 4.154 4 C -0.143 4.143 5 C -0.105 4.105 6 N -0.002 5.002 7 C -0.144 4.144 8 C -0.198 4.198 9 C 0.378 3.622 10 O -0.462 6.462 11 N -0.360 5.360 12 C 0.053 3.947 13 H 0.104 0.896 14 C -0.160 4.160 15 C -0.144 4.144 16 C -0.169 4.169 17 C 0.072 3.928 18 H 0.064 0.936 19 N -0.394 5.394 20 C -0.352 4.352 21 H 0.078 0.922 22 C -0.257 4.257 23 N -0.636 5.636 24 Si 0.779 3.221 25 H -0.207 1.207 26 H -0.228 1.228 27 H -0.175 1.175 28 C -0.164 4.164 29 C -0.185 4.185 30 C -0.085 4.085 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.180 0.820 35 H 0.197 0.803 36 H 0.202 0.798 37 H 0.210 0.790 38 H 0.243 0.757 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.198 0.802 46 H 0.064 0.936 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.271 13.465 1.876 26.092 hybrid contribution 1.330 -0.807 -0.512 1.638 sum -20.940 12.657 1.364 24.506 Atomic orbital electron populations 1.20770 0.88169 1.04055 1.03505 1.19724 0.97747 0.89743 0.99309 1.21283 0.94149 0.98483 1.01498 1.21224 0.94955 0.97933 1.00157 1.22321 0.99965 0.82658 1.05591 1.41458 1.07260 1.05948 1.45511 1.22386 0.99919 0.80830 1.11295 1.19611 0.94322 0.92121 1.13784 1.17606 0.83314 0.86347 0.74940 1.90711 1.34471 1.68329 1.52645 1.45997 1.08016 1.07696 1.74242 1.20875 0.97602 0.79206 0.97041 0.89646 1.21864 0.98121 1.01543 0.94485 1.21400 0.93527 1.00450 0.99005 1.22091 0.96504 1.00756 0.97501 1.20345 0.83942 0.96904 0.91624 0.93557 1.42822 1.04975 1.28734 1.62895 1.19012 0.86472 1.04400 1.25318 0.92222 1.25447 0.95202 1.02170 1.02869 1.69876 0.99598 1.42361 1.51778 0.85469 0.76889 0.80696 0.79072 1.20683 1.22840 1.17546 1.22039 0.92555 1.02367 0.99429 1.21088 0.98531 0.89631 1.09256 1.18971 0.82391 0.95418 1.11734 0.89883 0.88855 0.91606 0.82005 0.80303 0.79788 0.78969 0.75749 0.92270 0.89694 0.91411 0.92573 0.92343 0.94293 0.80219 0.93558 0.89274 0.91163 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.91 71.24 0.71 -0.56 16 2 C -0.06 -1.08 5.91 -19.67 -0.12 -1.20 16 3 C -0.13 -1.66 9.72 22.32 0.22 -1.44 16 4 C -0.12 -1.41 9.97 22.06 0.22 -1.20 16 5 C 0.01 0.18 10.89 82.97 0.90 1.08 16 6 N -0.34 -7.30 2.92 -345.06 -1.01 -8.31 16 7 C -0.01 -0.23 11.09 84.15 0.93 0.70 16 8 C -0.19 -5.20 6.12 -20.15 -0.12 -5.32 16 9 C 0.59 17.64 7.78 86.68 0.67 18.31 16 10 O -0.58 -20.89 16.58 -4.01 -0.07 -20.95 16 11 N -0.71 -18.57 4.22 -445.74 -1.88 -20.45 16 12 C 0.16 4.07 2.78 44.99 0.13 4.19 16 13 H 0.09 2.30 7.58 -2.39 -0.02 2.28 16 14 C -0.12 -2.98 5.60 30.59 0.17 -2.81 16 15 C -0.11 -2.74 5.77 30.59 0.18 -2.57 16 16 C -0.13 -4.10 5.50 30.59 0.17 -3.93 16 17 C 0.18 6.12 2.60 44.99 0.12 6.23 16 18 H 0.05 1.61 6.44 -2.39 -0.02 1.60 16 19 N -0.75 -32.80 4.92 -322.95 -1.59 -34.39 16 20 C -0.22 -11.99 10.41 84.03 0.87 -11.11 16 21 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 22 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 23 N -0.99 -61.95 13.97 21.65 0.30 -61.65 16 24 Si 0.95 44.59 27.74 68.60 1.90 46.49 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 27 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 28 C -0.13 -3.44 5.07 30.60 0.16 -3.29 16 29 C -0.16 -4.23 10.27 22.94 0.24 -4.00 16 30 C 0.02 0.46 6.60 38.90 0.26 0.72 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.68 8.08 -2.39 -0.02 0.66 16 33 H 0.06 0.87 7.70 -2.39 -0.02 0.85 16 34 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 35 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 37 H 0.19 3.58 7.42 -2.91 -0.02 3.56 16 38 H 0.41 9.92 5.76 -92.71 -0.53 9.39 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.08 1.85 8.14 -2.38 -0.02 1.84 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 1.48 7.60 -2.39 -0.02 1.46 16 43 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.36 15.41 5.66 -92.71 -0.52 14.89 16 46 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 47 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 49 H 0.15 3.79 7.93 -2.91 -0.02 3.77 16 Total: -1.00 -74.89 392.43 3.67 -71.22 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.15 Total: 37.53 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 6.16 Total: -9.50 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -4.18 Total: -124.80 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.07 Total: -20.95 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.49 kcal Total: -74.89 3.67 -71.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981454086.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.420 kcal (2) G-P(sol) polarization free energy of solvation -74.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds