Wall clock time and date at job start Wed Apr 1 2020 00:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34242 * 126.50538 * 2 1 4 4 N 1.36829 * 109.93129 * 180.24659 * 3 2 1 5 5 C 1.46501 * 125.06168 * 179.73402 * 4 3 2 6 6 C 1.50702 * 109.47121 * 265.02398 * 5 4 3 7 7 O 1.21278 * 119.99963 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00066 * 180.02562 * 6 5 4 9 9 C 1.47432 * 125.64430 * 0.02562 * 8 6 5 10 10 C 1.54903 * 104.82895 * 155.83822 * 9 8 6 11 11 C 1.55158 * 101.58548 * 37.00807 * 10 9 8 12 12 H 1.09001 * 110.71880 * 83.03780 * 11 10 9 13 13 N 1.46498 * 110.72159 * 206.13433 * 11 10 9 14 14 C 1.36932 * 120.00257 * 273.54411 * 13 11 10 15 15 H 1.08000 * 119.99873 * 0.02562 * 14 13 11 16 16 C 1.38807 * 120.00276 * 179.97438 * 14 13 11 17 17 N 1.31621 * 120.00210 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99965 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46903 * 90.00052 * 18 16 14 20 20 H 1.48501 * 109.47132 * 209.99782 * 18 16 14 21 21 H 1.48494 * 109.47044 * 329.99974 * 18 16 14 22 22 C 1.47021 * 125.65017 * 179.71802 * 8 6 5 23 23 H 1.08992 * 109.87991 * 300.51341 * 22 8 6 24 24 C 1.53006 * 109.88141 * 61.67710 * 22 8 6 25 25 C 1.37691 * 109.87226 * 359.55776 * 4 3 2 26 26 C 1.39128 * 133.50489 * 180.09774 * 25 4 3 27 27 C 1.37752 * 119.77533 * 180.38438 * 26 25 4 28 28 C 1.38824 * 120.66740 * 359.95876 * 27 26 25 29 29 C 1.36628 * 120.53228 * 0.03716 * 28 27 26 30 30 C 1.39627 * 119.76112 * 359.97438 * 29 28 27 31 31 H 1.09002 * 109.47569 * 90.01952 * 1 2 3 32 32 H 1.08996 * 109.47032 * 210.02766 * 1 2 3 33 33 H 1.09003 * 109.46742 * 330.02087 * 1 2 3 34 34 H 1.08002 * 125.03032 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.46996 * 25.02581 * 5 4 3 36 36 H 1.08999 * 109.47083 * 145.02902 * 5 4 3 37 37 H 1.09000 * 110.36347 * 274.67600 * 9 8 6 38 38 H 1.08999 * 110.36657 * 36.99689 * 9 8 6 39 39 H 1.09002 * 111.00490 * 155.08187 * 10 9 8 40 40 H 1.08996 * 111.00630 * 278.93255 * 10 9 8 41 41 H 0.97002 * 119.99763 * 93.55117 * 13 11 10 42 42 H 0.97001 * 120.00305 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.47151 * 58.54552 * 24 22 8 44 44 H 1.08989 * 109.46969 * 178.54853 * 24 22 8 45 45 H 1.09004 * 109.46874 * 298.54771 * 24 22 8 46 46 H 1.08001 * 120.11259 * 0.38143 * 26 25 4 47 47 H 1.08001 * 119.65978 * 179.97438 * 27 26 25 48 48 H 1.08008 * 119.73615 * 180.02562 * 28 27 26 49 49 H 1.08000 * 120.12114 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.0790 0.0000 4 7 3.6170 0.6887 -0.0055 5 6 4.7657 1.5980 -0.0127 6 6 5.2293 1.8105 -1.4309 7 8 4.6563 1.2573 -2.3455 8 7 6.2806 2.6153 -1.6827 9 6 7.0652 3.3459 -0.6707 10 6 8.4453 3.5819 -1.3334 11 6 8.0414 3.8504 -2.8072 12 1 7.7490 4.8916 -2.9434 13 7 9.1344 3.4977 -3.7167 14 6 10.1117 4.4140 -4.0004 15 1 10.0769 5.3965 -3.5534 16 6 11.1476 4.0797 -4.8617 17 7 12.0872 4.9602 -5.1341 18 14 11.2082 2.3800 -5.6343 19 1 10.4726 2.3961 -6.9242 20 1 12.6223 1.9961 -5.8757 21 1 10.5779 1.3967 -4.7173 22 6 6.8390 2.9050 -3.0116 23 1 7.1684 1.9801 -3.4849 24 6 5.7833 3.5907 -3.8813 25 6 3.6963 -0.6859 0.0007 26 6 4.7588 -1.5840 0.0007 27 6 4.5094 -2.9387 0.0001 28 6 3.2069 -3.4189 0.0003 29 6 2.1486 -2.5549 0.0003 30 6 2.3783 -1.1776 0.0007 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 1.9635 2.1035 -0.0004 35 1 4.4747 2.5544 0.4216 36 1 5.5760 1.1643 0.5732 37 1 6.5890 4.2980 -0.4364 38 1 7.1753 2.7438 0.2312 39 1 8.9433 4.4495 -0.9005 40 1 9.0729 2.6941 -1.2558 41 1 9.1658 2.6152 -4.1179 42 1 12.8109 4.7267 -5.7362 43 1 5.4555 4.5107 -3.3973 44 1 6.2120 3.8255 -4.8555 45 1 4.9305 2.9244 -4.0107 46 1 5.7757 -1.2203 0.0012 47 1 5.3357 -3.6343 -0.0003 48 1 3.0287 -4.4842 0.0002 49 1 1.1380 -2.9357 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987133433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:40 Heat of formation + Delta-G solvation = 49.667689 kcal Electronic energy + Delta-G solvation = -29529.365859 eV Core-core repulsion = 25650.440362 eV Total energy + Delta-G solvation = -3878.925497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -41.60465 -40.07732 -37.79740 -36.97272 -34.39050 -33.93285 -31.96710 -31.17747 -30.60815 -30.06147 -29.58103 -28.37735 -25.56149 -25.47128 -23.08857 -22.80607 -22.54210 -21.54127 -20.38010 -19.68367 -19.16183 -17.69577 -17.37536 -16.89184 -16.77648 -16.17501 -15.56487 -15.31692 -14.84718 -14.56014 -14.20303 -14.06106 -13.99811 -13.83059 -13.54511 -13.29075 -13.09763 -12.94723 -12.80507 -12.78032 -12.52932 -12.31172 -12.24480 -12.09663 -11.91244 -11.64407 -11.51376 -11.41420 -11.31381 -10.97229 -10.90408 -10.73184 -10.46490 -10.15071 -9.92044 -9.69592 -9.54928 -9.04688 -8.65662 -8.25975 -7.65713 -7.41672 -5.88149 -3.26000 1.03701 1.52889 2.32059 2.45916 2.61440 3.03583 3.31334 3.34930 3.40123 3.83462 4.26969 4.38639 4.49624 4.52689 4.60422 4.70373 4.79213 4.85457 4.97717 5.00626 5.05862 5.13903 5.21220 5.27025 5.37966 5.42032 5.49418 5.53900 5.55365 5.60016 5.63792 5.69181 5.75731 5.77014 5.84296 5.88415 6.06119 6.09055 6.22880 6.39207 6.40872 6.40989 6.46750 6.51853 6.64779 6.70152 6.70319 7.09332 7.13234 7.47686 7.84862 8.05144 8.30105 9.06329 9.79079 9.96848 11.29408 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.002548 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.008094 B =10986.302487 C =11709.185420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.175 4.175 3 C 0.059 3.941 4 N -0.467 5.467 5 C 0.097 3.903 6 C 0.505 3.495 7 O -0.521 6.521 8 N -0.608 5.608 9 C 0.094 3.906 10 C -0.155 4.155 11 C 0.182 3.818 12 H 0.075 0.925 13 N -0.739 5.739 14 C -0.249 4.249 15 H 0.092 0.908 16 C 0.010 3.990 17 N -0.929 5.929 18 Si 0.882 3.118 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.277 1.277 22 C 0.126 3.874 23 H 0.074 0.926 24 C -0.155 4.155 25 C 0.112 3.888 26 C -0.125 4.125 27 C -0.101 4.101 28 C -0.150 4.150 29 C -0.072 4.072 30 C -0.102 4.102 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.165 0.835 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.363 0.637 42 H 0.261 0.739 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.115 0.885 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.503 -9.480 15.716 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.182 4.182 3 C -0.065 4.065 4 N -0.149 5.149 5 C -0.029 4.029 6 C 0.291 3.709 7 O -0.397 6.397 8 N -0.343 5.343 9 C -0.029 4.029 10 C -0.196 4.196 11 C 0.071 3.929 12 H 0.093 0.907 13 N -0.381 5.381 14 C -0.379 4.379 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.576 5.576 18 Si 0.712 3.288 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.203 1.203 22 C 0.022 3.978 23 H 0.092 0.908 24 C -0.213 4.213 25 C 0.006 3.994 26 C -0.145 4.145 27 C -0.120 4.120 28 C -0.169 4.169 29 C -0.091 4.091 30 C -0.107 4.107 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.182 0.818 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.196 0.804 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.133 0.867 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.464 -9.363 15.186 27.149 hybrid contribution 0.520 -1.016 -0.628 1.303 sum -19.944 -10.379 14.558 26.785 Atomic orbital electron populations 1.20060 0.89498 1.01928 1.01612 1.20219 0.95109 0.90756 1.12119 1.21520 0.81502 0.99154 1.04332 1.43292 1.04955 1.03711 1.62980 1.21555 0.89656 0.95903 0.95791 1.20493 0.80002 0.79165 0.91270 1.90764 1.55081 1.47825 1.46015 1.48590 1.30327 1.45982 1.09392 1.22486 0.93056 0.96024 0.91364 1.23537 0.94098 1.03011 0.98920 1.21220 0.86292 0.96506 0.88901 0.90727 1.42706 1.26600 1.14660 1.54138 1.18998 1.00351 0.95388 1.23164 0.88979 1.24660 0.97083 0.97374 0.99524 1.69691 1.14190 1.34041 1.39667 0.86600 0.77116 0.85331 0.79758 1.20881 1.21583 1.20337 1.21926 0.94306 0.99134 0.82384 0.90782 1.22055 0.99020 1.00149 1.00122 1.18170 0.95502 0.82518 1.03185 1.20023 0.96541 0.92345 1.05609 1.20775 0.97002 0.94059 1.00193 1.20588 0.92461 0.99351 1.04467 1.20207 0.98909 0.90852 0.99104 1.19054 0.91788 0.93202 1.06606 0.91954 0.92006 0.92035 0.81784 0.86357 0.86897 0.91143 0.91214 0.89899 0.90633 0.80357 0.92879 0.92753 0.91027 0.91982 0.86711 0.85913 0.86225 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.41 36.00 0.37 -0.23 16 2 C -0.18 -1.99 6.32 -102.71 -0.65 -2.64 16 3 C 0.06 0.64 11.19 -16.73 -0.19 0.46 16 4 N -0.47 -5.57 2.27 -115.71 -0.26 -5.84 16 5 C 0.10 0.95 5.49 -5.19 -0.03 0.92 16 6 C 0.50 6.94 7.71 -10.98 -0.08 6.86 16 7 O -0.52 -9.42 15.46 5.56 0.09 -9.34 16 8 N -0.61 -8.11 3.07 -163.02 -0.50 -8.61 16 9 C 0.09 1.00 6.69 -2.53 -0.02 0.98 16 10 C -0.15 -2.22 6.76 -24.58 -0.17 -2.39 16 11 C 0.18 3.16 3.11 -66.10 -0.21 2.96 16 12 H 0.07 1.32 7.84 -51.93 -0.41 0.91 16 13 N -0.74 -16.37 5.05 -51.66 -0.26 -16.63 16 14 C -0.25 -6.62 10.46 -15.06 -0.16 -6.78 16 15 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 16 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 17 N -0.93 -28.20 13.97 55.49 0.78 -27.42 16 18 Si 0.88 21.58 27.74 -169.99 -4.71 16.87 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.43 6.52 56.52 0.37 -6.07 16 22 C 0.13 2.02 3.20 -66.95 -0.21 1.80 16 23 H 0.07 1.34 7.68 -51.93 -0.40 0.94 16 24 C -0.16 -2.39 9.11 37.16 0.34 -2.06 16 25 C 0.11 1.49 6.81 -83.98 -0.57 0.92 16 26 C -0.12 -1.55 10.00 -39.43 -0.39 -1.95 16 27 C -0.10 -1.12 10.01 -39.54 -0.40 -1.51 16 28 C -0.15 -1.57 9.97 -39.95 -0.40 -1.97 16 29 C -0.07 -0.81 10.05 -39.64 -0.40 -1.21 16 30 C -0.10 -1.31 6.35 -105.14 -0.67 -1.98 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.12 0.78 8.12 -51.93 -0.42 0.36 16 36 H 0.11 0.90 7.84 -51.93 -0.41 0.50 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.56 7.47 -51.93 -0.39 0.18 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.36 8.14 5.36 -40.82 -0.22 7.92 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.02 6.88 -51.93 -0.36 0.66 16 46 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 48 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 49 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -34.19 400.43 -10.45 -44.64 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.69 Total: 7.92 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -3.92 Total: -7.62 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.25 Total: -58.50 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.19 -10.45 -44.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987133433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.309 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds