Wall clock time and date at job start Wed Apr 1 2020 00:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34242 * 126.50538 * 2 1 4 4 N 1.36829 * 109.93129 * 180.24659 * 3 2 1 5 5 C 1.46501 * 125.06168 * 179.73402 * 4 3 2 6 6 C 1.50702 * 109.47121 * 265.02398 * 5 4 3 7 7 O 1.21278 * 119.99963 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00066 * 180.02562 * 6 5 4 9 9 C 1.47432 * 125.64430 * 0.02562 * 8 6 5 10 10 C 1.54903 * 104.82895 * 155.83822 * 9 8 6 11 11 C 1.55158 * 101.58548 * 37.00807 * 10 9 8 12 12 H 1.09001 * 110.71880 * 83.03780 * 11 10 9 13 13 N 1.46498 * 110.72159 * 206.13433 * 11 10 9 14 14 C 1.36932 * 120.00257 * 273.54411 * 13 11 10 15 15 H 1.08000 * 119.99873 * 0.02562 * 14 13 11 16 16 C 1.38807 * 120.00276 * 179.97438 * 14 13 11 17 17 N 1.31621 * 120.00210 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99965 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46903 * 90.00052 * 18 16 14 20 20 H 1.48501 * 109.47132 * 209.99782 * 18 16 14 21 21 H 1.48494 * 109.47044 * 329.99974 * 18 16 14 22 22 C 1.47021 * 125.65017 * 179.71802 * 8 6 5 23 23 H 1.08992 * 109.87991 * 300.51341 * 22 8 6 24 24 C 1.53006 * 109.88141 * 61.67710 * 22 8 6 25 25 C 1.37691 * 109.87226 * 359.55776 * 4 3 2 26 26 C 1.39128 * 133.50489 * 180.09774 * 25 4 3 27 27 C 1.37752 * 119.77533 * 180.38438 * 26 25 4 28 28 C 1.38824 * 120.66740 * 359.95876 * 27 26 25 29 29 C 1.36628 * 120.53228 * 0.03716 * 28 27 26 30 30 C 1.39627 * 119.76112 * 359.97438 * 29 28 27 31 31 H 1.09002 * 109.47569 * 90.01952 * 1 2 3 32 32 H 1.08996 * 109.47032 * 210.02766 * 1 2 3 33 33 H 1.09003 * 109.46742 * 330.02087 * 1 2 3 34 34 H 1.08002 * 125.03032 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.46996 * 25.02581 * 5 4 3 36 36 H 1.08999 * 109.47083 * 145.02902 * 5 4 3 37 37 H 1.09000 * 110.36347 * 274.67600 * 9 8 6 38 38 H 1.08999 * 110.36657 * 36.99689 * 9 8 6 39 39 H 1.09002 * 111.00490 * 155.08187 * 10 9 8 40 40 H 1.08996 * 111.00630 * 278.93255 * 10 9 8 41 41 H 0.97002 * 119.99763 * 93.55117 * 13 11 10 42 42 H 0.97001 * 120.00305 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.47151 * 58.54552 * 24 22 8 44 44 H 1.08989 * 109.46969 * 178.54853 * 24 22 8 45 45 H 1.09004 * 109.46874 * 298.54771 * 24 22 8 46 46 H 1.08001 * 120.11259 * 0.38143 * 26 25 4 47 47 H 1.08001 * 119.65978 * 179.97438 * 27 26 25 48 48 H 1.08008 * 119.73615 * 180.02562 * 28 27 26 49 49 H 1.08000 * 120.12114 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.0790 0.0000 4 7 3.6170 0.6887 -0.0055 5 6 4.7657 1.5980 -0.0127 6 6 5.2293 1.8105 -1.4309 7 8 4.6563 1.2573 -2.3455 8 7 6.2806 2.6153 -1.6827 9 6 7.0652 3.3459 -0.6707 10 6 8.4453 3.5819 -1.3334 11 6 8.0414 3.8504 -2.8072 12 1 7.7490 4.8916 -2.9434 13 7 9.1344 3.4977 -3.7167 14 6 10.1117 4.4140 -4.0004 15 1 10.0769 5.3965 -3.5534 16 6 11.1476 4.0797 -4.8617 17 7 12.0872 4.9602 -5.1341 18 14 11.2082 2.3800 -5.6343 19 1 10.4726 2.3961 -6.9242 20 1 12.6223 1.9961 -5.8757 21 1 10.5779 1.3967 -4.7173 22 6 6.8390 2.9050 -3.0116 23 1 7.1684 1.9801 -3.4849 24 6 5.7833 3.5907 -3.8813 25 6 3.6963 -0.6859 0.0007 26 6 4.7588 -1.5840 0.0007 27 6 4.5094 -2.9387 0.0001 28 6 3.2069 -3.4189 0.0003 29 6 2.1486 -2.5549 0.0003 30 6 2.3783 -1.1776 0.0007 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 1.9635 2.1035 -0.0004 35 1 4.4747 2.5544 0.4216 36 1 5.5760 1.1643 0.5732 37 1 6.5890 4.2980 -0.4364 38 1 7.1753 2.7438 0.2312 39 1 8.9433 4.4495 -0.9005 40 1 9.0729 2.6941 -1.2558 41 1 9.1658 2.6152 -4.1179 42 1 12.8109 4.7267 -5.7362 43 1 5.4555 4.5107 -3.3973 44 1 6.2120 3.8255 -4.8555 45 1 4.9305 2.9244 -4.0107 46 1 5.7757 -1.2203 0.0012 47 1 5.3357 -3.6343 -0.0003 48 1 3.0287 -4.4842 0.0002 49 1 1.1380 -2.9357 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987133433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:38 Heat of formation + Delta-G solvation = 30.233716 kcal Electronic energy + Delta-G solvation = -29530.208579 eV Core-core repulsion = 25650.440362 eV Total energy + Delta-G solvation = -3879.768218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.42298 -41.18448 -38.98421 -37.83400 -36.06975 -34.75514 -33.64685 -32.46214 -31.70539 -31.04489 -30.58836 -29.21361 -26.94636 -26.36891 -24.54254 -24.00664 -23.46597 -22.43662 -21.75980 -20.54982 -20.27840 -19.50123 -18.40736 -17.84435 -17.60103 -17.27997 -16.45766 -16.36167 -16.26879 -15.95871 -15.60603 -15.03995 -14.88868 -14.79619 -14.76675 -14.66917 -14.09709 -13.99807 -13.86901 -13.64865 -13.59996 -13.50786 -13.37861 -13.11007 -12.98278 -12.94221 -12.74443 -12.62348 -12.44307 -12.23127 -12.16844 -12.08830 -11.83934 -11.69440 -11.59665 -11.05713 -10.95988 -10.40401 -9.76608 -9.35208 -9.09759 -8.45784 -8.04758 -5.38597 0.20982 0.67830 1.35246 1.37107 1.42818 1.44492 1.46688 1.84021 2.07924 2.44655 2.98687 3.23979 3.34760 3.49660 3.67068 3.70714 3.75458 3.88095 3.92648 4.05415 4.09215 4.11728 4.26627 4.28388 4.34617 4.42251 4.45629 4.47857 4.60356 4.65205 4.70217 4.85175 4.87410 4.88706 4.96184 4.96924 5.00659 5.16652 5.19949 5.20984 5.25670 5.31708 5.39869 5.58585 5.69985 5.75047 5.85729 5.90657 6.19016 6.30099 6.31863 6.48227 7.00664 7.03653 7.78377 7.95314 9.16043 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.002548 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.008094 B =10986.302487 C =11709.185420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.193 4.193 3 C 0.052 3.948 4 N -0.473 5.473 5 C 0.102 3.898 6 C 0.504 3.496 7 O -0.572 6.572 8 N -0.605 5.605 9 C 0.101 3.899 10 C -0.150 4.150 11 C 0.173 3.827 12 H 0.073 0.927 13 N -0.746 5.746 14 C -0.223 4.223 15 H 0.069 0.931 16 C -0.057 4.057 17 N -0.979 5.979 18 Si 0.943 3.057 19 H -0.283 1.283 20 H -0.296 1.296 21 H -0.259 1.259 22 C 0.132 3.868 23 H 0.048 0.952 24 C -0.146 4.146 25 C 0.085 3.915 26 C -0.145 4.145 27 C -0.109 4.109 28 C -0.155 4.155 29 C -0.083 4.083 30 C -0.130 4.130 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.194 0.806 35 H 0.160 0.840 36 H 0.135 0.865 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.362 0.638 42 H 0.257 0.743 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.118 0.882 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.358 -10.148 18.030 30.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.200 4.200 3 C -0.072 4.072 4 N -0.156 5.156 5 C -0.023 4.023 6 C 0.292 3.708 7 O -0.451 6.451 8 N -0.340 5.340 9 C -0.020 4.020 10 C -0.190 4.190 11 C 0.064 3.936 12 H 0.091 0.909 13 N -0.389 5.389 14 C -0.353 4.353 15 H 0.087 0.913 16 C -0.249 4.249 17 N -0.629 5.629 18 Si 0.772 3.228 19 H -0.210 1.210 20 H -0.222 1.222 21 H -0.184 1.184 22 C 0.028 3.972 23 H 0.067 0.933 24 C -0.204 4.204 25 C -0.021 4.021 26 C -0.166 4.166 27 C -0.128 4.128 28 C -0.173 4.173 29 C -0.102 4.102 30 C -0.135 4.135 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.210 0.790 35 H 0.177 0.823 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.195 0.805 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.136 0.864 47 H 0.160 0.840 48 H 0.162 0.838 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.369 -10.036 17.568 30.162 hybrid contribution 1.018 -0.781 -1.307 1.832 sum -21.351 -10.817 16.261 28.936 Atomic orbital electron populations 1.20095 0.87726 1.03131 1.01806 1.20660 0.96540 0.90504 1.12275 1.22070 0.81206 1.00422 1.03523 1.43478 1.05787 1.03458 1.62827 1.21783 0.89935 0.97698 0.92926 1.21256 0.79132 0.77842 0.92551 1.90748 1.56706 1.49643 1.47969 1.48607 1.30488 1.46184 1.08679 1.22659 0.90126 0.97964 0.91266 1.23370 0.96446 1.02621 0.96583 1.21428 0.85556 0.96673 0.89942 0.90899 1.42729 1.27004 1.13814 1.55310 1.18974 1.00413 0.94923 1.21025 0.91334 1.25350 0.97402 1.00969 1.01158 1.69844 1.15397 1.36213 1.41448 0.85587 0.76624 0.81584 0.79003 1.20953 1.22242 1.18376 1.21605 0.93944 0.97535 0.84146 0.93338 1.21953 0.98268 1.00503 0.99706 1.18492 0.95987 0.83582 1.04004 1.20242 0.96709 0.93050 1.06562 1.21116 0.98038 0.94082 0.99551 1.20932 0.92134 1.00636 1.03645 1.20535 1.00121 0.90665 0.98859 1.19519 0.92379 0.94354 1.07198 0.92156 0.91491 0.90186 0.78957 0.82278 0.84720 0.88135 0.87399 0.89423 0.91975 0.80504 0.93352 0.91067 0.92200 0.93127 0.86387 0.84006 0.83790 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.41 71.24 0.74 -0.29 16 2 C -0.19 -4.12 6.32 -18.63 -0.12 -4.24 16 3 C 0.05 1.01 11.19 83.00 0.93 1.94 16 4 N -0.47 -10.29 2.27 -519.98 -1.18 -11.47 16 5 C 0.10 1.62 5.49 85.63 0.47 2.09 16 6 C 0.50 12.69 7.71 87.66 0.68 13.37 16 7 O -0.57 -20.31 15.46 -3.02 -0.05 -20.36 16 8 N -0.61 -14.54 3.07 -788.07 -2.42 -16.95 16 9 C 0.10 1.72 6.69 86.85 0.58 2.30 16 10 C -0.15 -3.94 6.76 31.98 0.22 -3.73 16 11 C 0.17 5.82 3.11 46.18 0.14 5.96 16 12 H 0.07 2.49 7.84 -2.39 -0.02 2.47 16 13 N -0.75 -32.83 5.05 -317.35 -1.60 -34.44 16 14 C -0.22 -11.93 10.46 84.03 0.88 -11.05 16 15 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 16 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 17 N -0.98 -60.98 13.97 21.65 0.30 -60.68 16 18 Si 0.94 45.21 27.74 68.60 1.90 47.11 16 19 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 20 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 21 H -0.26 -11.42 6.52 99.48 0.65 -10.77 16 22 C 0.13 4.11 3.20 45.34 0.15 4.25 16 23 H 0.05 1.76 7.68 -2.39 -0.02 1.74 16 24 C -0.15 -4.41 9.11 71.98 0.66 -3.75 16 25 C 0.08 2.19 6.81 39.03 0.27 2.45 16 26 C -0.15 -3.51 10.00 22.37 0.22 -3.29 16 27 C -0.11 -2.30 10.01 22.29 0.22 -2.07 16 28 C -0.15 -3.05 9.97 22.03 0.22 -2.83 16 29 C -0.08 -1.80 10.05 22.23 0.22 -1.58 16 30 C -0.13 -3.25 6.35 -20.20 -0.13 -3.38 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.19 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.16 1.23 8.12 -2.39 -0.02 1.21 16 36 H 0.14 1.59 7.84 -2.39 -0.02 1.57 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.12 7.47 -2.39 -0.02 1.11 16 39 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.36 16.04 5.36 -92.71 -0.50 15.55 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.05 1.65 6.88 -2.39 -0.02 1.63 16 46 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 47 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 48 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 49 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -77.95 400.43 4.16 -73.79 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.39 Total: 29.63 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 6.81 Total: -6.63 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -4.90 Total: -123.54 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.05 Total: -20.36 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.11 kcal Total: -77.95 4.16 -73.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987133433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.019 kcal (2) G-P(sol) polarization free energy of solvation -77.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds