Wall clock time and date at job start Wed Apr 1 2020 00:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34236 * 126.49991 * 2 1 4 4 N 1.36839 * 109.92769 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.06479 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47138 * 265.02606 * 5 4 3 7 7 O 1.21286 * 119.99779 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00144 * 180.02562 * 6 5 4 9 9 C 1.47422 * 125.64800 * 0.02562 * 8 6 5 10 10 C 1.54908 * 104.83454 * 204.09558 * 9 8 6 11 11 C 1.55167 * 101.57984 * 322.99241 * 10 9 8 12 12 H 1.08992 * 110.71685 * 276.95889 * 11 10 9 13 13 N 1.46500 * 110.71884 * 153.86353 * 11 10 9 14 14 C 1.36940 * 119.99730 * 86.45222 * 13 11 10 15 15 H 1.08001 * 120.00206 * 0.02562 * 14 13 11 16 16 C 1.38814 * 119.99781 * 179.97438 * 14 13 11 17 17 N 1.31624 * 119.99942 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47023 * 90.00434 * 18 16 14 20 20 H 1.48501 * 109.47362 * 210.00411 * 18 16 14 21 21 H 1.48501 * 109.47320 * 330.00165 * 18 16 14 22 22 C 1.47026 * 125.64760 * 179.71511 * 8 6 5 23 23 H 1.09001 * 109.88094 * 59.55606 * 22 8 6 24 24 C 1.53001 * 109.88037 * 298.39188 * 22 8 6 25 25 C 1.37691 * 109.87435 * 359.97438 * 4 3 2 26 26 C 1.39121 * 133.51037 * 179.97438 * 25 4 3 27 27 C 1.37748 * 119.77937 * 179.75157 * 26 25 4 28 28 C 1.38832 * 120.66734 * 0.56405 * 27 26 25 29 29 C 1.36629 * 120.52376 * 359.43110 * 28 27 26 30 30 C 1.39624 * 119.76383 * 0.28383 * 29 28 27 31 31 H 1.08994 * 109.47401 * 270.04380 * 1 2 3 32 32 H 1.09003 * 109.46930 * 30.04569 * 1 2 3 33 33 H 1.09003 * 109.47329 * 150.04289 * 1 2 3 34 34 H 1.07995 * 125.03961 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.47110 * 25.01846 * 5 4 3 36 36 H 1.08995 * 109.47100 * 145.02163 * 5 4 3 37 37 H 1.08996 * 110.36605 * 322.93565 * 9 8 6 38 38 H 1.08999 * 110.36067 * 85.25843 * 9 8 6 39 39 H 1.08998 * 111.00666 * 81.06608 * 10 9 8 40 40 H 1.09004 * 111.00663 * 204.88327 * 10 9 8 41 41 H 0.96997 * 120.00317 * 266.45479 * 13 11 10 42 42 H 0.96996 * 120.00074 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.47274 * 61.45391 * 24 22 8 44 44 H 1.09003 * 109.47076 * 181.45631 * 24 22 8 45 45 H 1.08997 * 109.46996 * 301.45540 * 24 22 8 46 46 H 1.08006 * 120.10903 * 0.02562 * 26 25 4 47 47 H 1.08002 * 119.66688 * 180.27801 * 27 26 25 48 48 H 1.08002 * 119.74071 * 179.71731 * 28 27 26 49 49 H 1.08004 * 120.11783 * 180.29478 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6888 0.0006 5 6 4.7657 1.5980 0.0013 6 6 5.2367 1.8134 -1.4139 7 8 4.6690 1.2613 -2.3326 8 7 6.2894 2.6187 -1.6586 9 6 7.0686 3.3472 -0.6411 10 6 7.6962 4.5416 -1.4021 11 6 8.0223 3.8986 -2.7762 12 1 8.9732 3.3673 -2.7372 13 7 8.0409 4.9139 -3.8321 14 6 9.1880 5.6177 -4.0852 15 1 10.0791 5.4240 -3.5066 16 6 9.2057 6.5793 -5.0861 17 7 8.1198 6.8150 -5.7916 18 14 10.7707 7.5388 -5.4318 19 1 11.5769 6.8204 -6.4512 20 1 10.4211 8.8899 -5.9395 21 1 11.5582 7.6692 -4.1796 22 6 6.8547 2.9110 -2.9839 23 1 6.0948 3.3667 -3.6188 24 6 7.3686 1.6211 -3.6265 25 6 3.6963 -0.6859 0.0015 26 6 4.7588 -1.5840 0.0020 27 6 4.5095 -2.9387 0.0082 28 6 3.2069 -3.4190 0.0023 29 6 2.1486 -2.5548 0.0019 30 6 2.3784 -1.1776 0.0015 31 1 -0.3634 0.0008 1.0276 32 1 -0.3633 0.8896 -0.5146 33 1 -0.3634 -0.8904 -0.5132 34 1 1.9635 2.1034 -0.0004 35 1 4.4724 2.5536 0.4359 36 1 5.5728 1.1632 0.5907 37 1 6.4140 3.7054 0.1534 38 1 7.8492 2.7065 -0.2307 39 1 6.9792 5.3551 -1.5119 40 1 8.6035 4.8873 -0.9067 41 1 7.2407 5.0876 -4.3520 42 1 8.1321 7.4872 -6.4908 43 1 6.5398 0.9256 -3.7582 44 1 7.8093 1.8491 -4.5970 45 1 8.1228 1.1696 -2.9820 46 1 5.7757 -1.2202 0.0019 47 1 5.3356 -3.6343 0.0130 48 1 3.0286 -4.4842 0.0027 49 1 1.1379 -2.9356 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987133436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:00 Heat of formation + Delta-G solvation = 45.305186 kcal Electronic energy + Delta-G solvation = -29420.225076 eV Core-core repulsion = 25541.110406 eV Total energy + Delta-G solvation = -3879.114670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -41.55737 -39.97068 -37.68549 -36.91862 -34.23937 -33.87651 -31.89275 -31.04625 -30.49210 -29.95870 -29.26208 -28.26982 -25.49902 -25.29844 -23.19618 -22.94793 -22.48039 -21.51412 -20.24138 -19.66003 -19.02523 -17.44784 -17.15817 -16.84480 -16.69082 -16.05447 -15.52994 -15.16560 -14.83074 -14.63835 -14.15693 -13.95190 -13.85289 -13.66769 -13.48265 -13.24525 -13.10112 -12.98277 -12.82972 -12.72450 -12.36200 -12.23496 -12.18232 -11.90863 -11.71699 -11.60219 -11.47190 -11.25223 -11.11086 -10.89484 -10.87219 -10.67827 -10.32948 -10.10907 -9.88640 -9.76557 -9.50422 -9.01573 -8.55214 -8.22155 -7.61688 -7.10405 -5.87590 -3.18640 1.06968 1.56217 2.37780 2.54754 2.66564 3.12016 3.36816 3.42043 3.43918 3.86624 4.35272 4.44211 4.49187 4.56575 4.65659 4.76197 4.88733 4.89417 5.03215 5.12245 5.18931 5.23454 5.25001 5.37829 5.45251 5.46037 5.57495 5.58409 5.64429 5.67534 5.68594 5.79956 5.82805 5.88827 5.98923 6.04138 6.09728 6.19890 6.35643 6.41963 6.48538 6.52380 6.54499 6.60481 6.68579 6.74554 6.82918 7.13616 7.17567 7.57758 7.59876 8.14305 8.29491 9.41023 9.94750 10.29270 11.34488 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002245 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.565413 B =12470.409645 C =12860.099327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.176 4.176 3 C 0.061 3.939 4 N -0.466 5.466 5 C 0.097 3.903 6 C 0.504 3.496 7 O -0.521 6.521 8 N -0.607 5.607 9 C 0.094 3.906 10 C -0.155 4.155 11 C 0.177 3.823 12 H 0.065 0.935 13 N -0.715 5.715 14 C -0.245 4.245 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.929 5.929 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.128 3.872 23 H 0.078 0.922 24 C -0.154 4.154 25 C 0.112 3.888 26 C -0.124 4.124 27 C -0.102 4.102 28 C -0.150 4.150 29 C -0.072 4.072 30 C -0.102 4.102 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.165 0.835 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.114 0.886 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.179 -15.260 17.189 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.183 4.183 3 C -0.064 4.064 4 N -0.149 5.149 5 C -0.029 4.029 6 C 0.290 3.710 7 O -0.397 6.397 8 N -0.342 5.342 9 C -0.029 4.029 10 C -0.196 4.196 11 C 0.065 3.935 12 H 0.083 0.917 13 N -0.355 5.355 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.025 3.975 23 H 0.096 0.904 24 C -0.212 4.212 25 C 0.006 3.994 26 C -0.145 4.145 27 C -0.121 4.121 28 C -0.169 4.169 29 C -0.090 4.090 30 C -0.106 4.106 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.183 0.817 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.220 0.780 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.133 0.867 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.135 -15.265 16.659 24.764 hybrid contribution 0.816 0.894 -0.433 1.285 sum -9.319 -14.371 16.226 23.594 Atomic orbital electron populations 1.20058 0.89497 1.02184 1.01351 1.20217 0.95121 0.90739 1.12200 1.21546 0.81508 0.99222 1.04099 1.43307 1.04976 1.03707 1.62892 1.21563 0.89605 0.95825 0.95946 1.20465 0.79938 0.79392 0.91208 1.90768 1.55454 1.47883 1.45585 1.48598 1.30068 1.45933 1.09599 1.22460 0.94798 0.94348 0.91284 1.23573 1.00968 0.96343 0.98757 1.21230 0.94592 0.89120 0.88543 0.91726 1.42345 1.13123 1.41472 1.38574 1.19187 0.90247 1.13828 1.14344 0.90974 1.24780 0.97382 0.99853 0.98599 1.69664 1.27001 1.36306 1.24698 0.86174 0.82510 0.79338 0.78022 1.21597 1.21723 1.20680 1.21924 0.96405 0.96226 0.82940 0.90442 1.22035 1.00950 0.97083 1.01136 1.18167 0.95498 0.82533 1.03153 1.20002 0.96494 0.92311 1.05675 1.20757 0.96959 0.94031 1.00375 1.20578 0.92473 0.99306 1.04585 1.20206 0.98907 0.90859 0.99077 1.19058 0.91812 0.93195 1.06559 0.92100 0.91964 0.91949 0.81748 0.86408 0.86955 0.91348 0.91438 0.90543 0.90408 0.77981 0.93309 0.92056 0.91045 0.93089 0.86747 0.85975 0.86271 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.41 36.01 0.37 -0.27 16 2 C -0.18 -2.09 6.32 -102.71 -0.65 -2.74 16 3 C 0.06 0.70 11.19 -16.73 -0.19 0.52 16 4 N -0.47 -5.80 2.27 -115.72 -0.26 -6.06 16 5 C 0.10 1.00 5.49 -5.20 -0.03 0.97 16 6 C 0.50 7.31 7.71 -10.99 -0.08 7.23 16 7 O -0.52 -9.85 15.47 5.55 0.09 -9.77 16 8 N -0.61 -8.61 3.06 -163.01 -0.50 -9.11 16 9 C 0.09 1.07 6.69 -2.53 -0.02 1.06 16 10 C -0.16 -2.34 6.77 -24.58 -0.17 -2.50 16 11 C 0.18 3.23 3.12 -66.09 -0.21 3.03 16 12 H 0.06 1.19 7.83 -51.93 -0.41 0.78 16 13 N -0.71 -16.89 5.25 -51.64 -0.27 -17.16 16 14 C -0.25 -6.43 9.98 -15.06 -0.15 -6.58 16 15 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 17 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 18 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.13 2.19 3.21 -66.95 -0.21 1.98 16 23 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 24 C -0.15 -2.55 9.11 37.16 0.34 -2.21 16 25 C 0.11 1.51 6.80 -83.99 -0.57 0.94 16 26 C -0.12 -1.53 10.00 -39.43 -0.39 -1.92 16 27 C -0.10 -1.10 10.01 -39.54 -0.40 -1.50 16 28 C -0.15 -1.57 9.97 -39.94 -0.40 -1.97 16 29 C -0.07 -0.82 10.05 -39.65 -0.40 -1.22 16 30 C -0.10 -1.34 6.35 -105.14 -0.67 -2.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.12 0.89 7.82 -51.93 -0.41 0.49 16 36 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.59 7.48 -51.93 -0.39 0.20 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.39 9.92 7.51 -40.82 -0.31 9.62 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.06 1.08 6.89 -51.93 -0.36 0.72 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 47 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -33.29 403.59 -10.81 -44.10 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.73 Total: 9.44 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.91 Total: -7.54 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.31 Total: -58.90 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.29 -10.81 -44.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987133436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.403 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds