Wall clock time and date at job start Wed Apr 1 2020 00:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34236 * 126.49991 * 2 1 4 4 N 1.36839 * 109.92769 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.06479 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47138 * 265.02606 * 5 4 3 7 7 O 1.21286 * 119.99779 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00144 * 180.02562 * 6 5 4 9 9 C 1.47422 * 125.64800 * 0.02562 * 8 6 5 10 10 C 1.54908 * 104.83454 * 204.09558 * 9 8 6 11 11 C 1.55167 * 101.57984 * 322.99241 * 10 9 8 12 12 H 1.08992 * 110.71685 * 276.95889 * 11 10 9 13 13 N 1.46500 * 110.71884 * 153.86353 * 11 10 9 14 14 C 1.36940 * 119.99730 * 86.45222 * 13 11 10 15 15 H 1.08001 * 120.00206 * 0.02562 * 14 13 11 16 16 C 1.38814 * 119.99781 * 179.97438 * 14 13 11 17 17 N 1.31624 * 119.99942 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47023 * 90.00434 * 18 16 14 20 20 H 1.48501 * 109.47362 * 210.00411 * 18 16 14 21 21 H 1.48501 * 109.47320 * 330.00165 * 18 16 14 22 22 C 1.47026 * 125.64760 * 179.71511 * 8 6 5 23 23 H 1.09001 * 109.88094 * 59.55606 * 22 8 6 24 24 C 1.53001 * 109.88037 * 298.39188 * 22 8 6 25 25 C 1.37691 * 109.87435 * 359.97438 * 4 3 2 26 26 C 1.39121 * 133.51037 * 179.97438 * 25 4 3 27 27 C 1.37748 * 119.77937 * 179.75157 * 26 25 4 28 28 C 1.38832 * 120.66734 * 0.56405 * 27 26 25 29 29 C 1.36629 * 120.52376 * 359.43110 * 28 27 26 30 30 C 1.39624 * 119.76383 * 0.28383 * 29 28 27 31 31 H 1.08994 * 109.47401 * 270.04380 * 1 2 3 32 32 H 1.09003 * 109.46930 * 30.04569 * 1 2 3 33 33 H 1.09003 * 109.47329 * 150.04289 * 1 2 3 34 34 H 1.07995 * 125.03961 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.47110 * 25.01846 * 5 4 3 36 36 H 1.08995 * 109.47100 * 145.02163 * 5 4 3 37 37 H 1.08996 * 110.36605 * 322.93565 * 9 8 6 38 38 H 1.08999 * 110.36067 * 85.25843 * 9 8 6 39 39 H 1.08998 * 111.00666 * 81.06608 * 10 9 8 40 40 H 1.09004 * 111.00663 * 204.88327 * 10 9 8 41 41 H 0.96997 * 120.00317 * 266.45479 * 13 11 10 42 42 H 0.96996 * 120.00074 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.47274 * 61.45391 * 24 22 8 44 44 H 1.09003 * 109.47076 * 181.45631 * 24 22 8 45 45 H 1.08997 * 109.46996 * 301.45540 * 24 22 8 46 46 H 1.08006 * 120.10903 * 0.02562 * 26 25 4 47 47 H 1.08002 * 119.66688 * 180.27801 * 27 26 25 48 48 H 1.08002 * 119.74071 * 179.71731 * 28 27 26 49 49 H 1.08004 * 120.11783 * 180.29478 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6888 0.0006 5 6 4.7657 1.5980 0.0013 6 6 5.2367 1.8134 -1.4139 7 8 4.6690 1.2613 -2.3326 8 7 6.2894 2.6187 -1.6586 9 6 7.0686 3.3472 -0.6411 10 6 7.6962 4.5416 -1.4021 11 6 8.0223 3.8986 -2.7762 12 1 8.9732 3.3673 -2.7372 13 7 8.0409 4.9139 -3.8321 14 6 9.1880 5.6177 -4.0852 15 1 10.0791 5.4240 -3.5066 16 6 9.2057 6.5793 -5.0861 17 7 8.1198 6.8150 -5.7916 18 14 10.7707 7.5388 -5.4318 19 1 11.5769 6.8204 -6.4512 20 1 10.4211 8.8899 -5.9395 21 1 11.5582 7.6692 -4.1796 22 6 6.8547 2.9110 -2.9839 23 1 6.0948 3.3667 -3.6188 24 6 7.3686 1.6211 -3.6265 25 6 3.6963 -0.6859 0.0015 26 6 4.7588 -1.5840 0.0020 27 6 4.5095 -2.9387 0.0082 28 6 3.2069 -3.4190 0.0023 29 6 2.1486 -2.5548 0.0019 30 6 2.3784 -1.1776 0.0015 31 1 -0.3634 0.0008 1.0276 32 1 -0.3633 0.8896 -0.5146 33 1 -0.3634 -0.8904 -0.5132 34 1 1.9635 2.1034 -0.0004 35 1 4.4724 2.5536 0.4359 36 1 5.5728 1.1632 0.5907 37 1 6.4140 3.7054 0.1534 38 1 7.8492 2.7065 -0.2307 39 1 6.9792 5.3551 -1.5119 40 1 8.6035 4.8873 -0.9067 41 1 7.2407 5.0876 -4.3520 42 1 8.1321 7.4872 -6.4908 43 1 6.5398 0.9256 -3.7582 44 1 7.8093 1.8491 -4.5970 45 1 8.1228 1.1696 -2.9820 46 1 5.7757 -1.2202 0.0019 47 1 5.3356 -3.6343 0.0130 48 1 3.0286 -4.4842 0.0027 49 1 1.1379 -2.9356 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987133436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:56 Heat of formation + Delta-G solvation = 26.908791 kcal Electronic energy + Delta-G solvation = -29421.022804 eV Core-core repulsion = 25541.110406 eV Total energy + Delta-G solvation = -3879.912397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -42.41113 -41.14452 -38.91781 -37.81079 -35.95084 -34.74882 -33.46621 -32.38454 -31.51862 -30.89882 -30.49244 -29.18109 -26.89133 -26.36245 -24.84793 -23.98284 -23.44402 -22.43202 -21.60269 -20.54069 -20.17708 -19.16246 -18.34527 -17.83841 -17.52279 -17.27250 -16.52646 -16.31339 -16.23414 -15.78367 -15.51201 -15.13967 -14.90202 -14.80211 -14.71839 -14.56542 -14.05147 -13.98361 -13.81227 -13.59374 -13.55743 -13.35622 -13.15832 -13.02379 -12.93340 -12.92774 -12.66888 -12.59409 -12.43299 -12.22722 -12.19879 -12.09052 -11.73192 -11.67827 -11.57443 -11.02870 -10.90968 -10.38442 -9.74338 -9.08180 -9.04553 -8.44977 -7.95641 -5.25816 0.22834 0.70234 1.45412 1.47127 1.49360 1.49881 1.58077 1.84880 2.09259 2.56172 3.01059 3.31734 3.41023 3.68886 3.72832 3.74827 3.78080 3.90185 3.99305 4.06852 4.12652 4.15442 4.28910 4.32388 4.40127 4.45563 4.48209 4.48767 4.60729 4.66639 4.70866 4.86789 4.88563 4.90470 4.96145 4.99729 5.02844 5.16141 5.20246 5.22977 5.27731 5.32199 5.44631 5.53714 5.60464 5.72133 5.87935 5.91488 6.24472 6.31806 6.32580 6.50649 7.03131 7.30981 8.03068 8.26315 9.27950 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002245 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.565413 B =12470.409645 C =12860.099327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.192 4.192 3 C 0.047 3.953 4 N -0.473 5.473 5 C 0.103 3.897 6 C 0.502 3.498 7 O -0.574 6.574 8 N -0.605 5.605 9 C 0.101 3.899 10 C -0.147 4.147 11 C 0.170 3.830 12 H 0.069 0.931 13 N -0.731 5.731 14 C -0.235 4.235 15 H 0.084 0.916 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.973 3.027 19 H -0.290 1.290 20 H -0.300 1.300 21 H -0.263 1.263 22 C 0.135 3.865 23 H 0.041 0.959 24 C -0.143 4.143 25 C 0.086 3.914 26 C -0.143 4.143 27 C -0.106 4.106 28 C -0.154 4.154 29 C -0.084 4.084 30 C -0.131 4.131 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.188 0.812 35 H 0.153 0.847 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.370 0.630 42 H 0.250 0.750 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.122 0.878 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 -16.109 20.243 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.199 4.199 3 C -0.077 4.077 4 N -0.156 5.156 5 C -0.022 4.022 6 C 0.290 3.710 7 O -0.453 6.453 8 N -0.339 5.339 9 C -0.021 4.021 10 C -0.188 4.188 11 C 0.061 3.939 12 H 0.087 0.913 13 N -0.370 5.370 14 C -0.366 4.366 15 H 0.102 0.898 16 C -0.269 4.269 17 N -0.623 5.623 18 Si 0.802 3.198 19 H -0.218 1.218 20 H -0.227 1.227 21 H -0.188 1.188 22 C 0.030 3.970 23 H 0.059 0.941 24 C -0.201 4.201 25 C -0.019 4.019 26 C -0.163 4.163 27 C -0.125 4.125 28 C -0.173 4.173 29 C -0.103 4.103 30 C -0.136 4.136 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.205 0.795 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.202 0.798 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.140 0.860 47 H 0.163 0.837 48 H 0.163 0.837 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.278 -16.141 19.800 27.178 hybrid contribution 0.524 1.033 -1.357 1.785 sum -8.754 -15.108 18.443 25.397 Atomic orbital electron populations 1.20095 0.87804 1.02568 1.02312 1.20660 0.96521 0.90606 1.12115 1.22025 0.81482 1.00315 1.03892 1.43474 1.05627 1.03614 1.62844 1.21773 0.90057 0.97497 0.92914 1.21297 0.78939 0.78131 0.92593 1.90750 1.56972 1.49917 1.47658 1.48622 1.30321 1.46127 1.08833 1.22663 0.95913 0.92805 0.90677 1.23376 1.01413 0.97158 0.96871 1.21437 0.95157 0.88493 0.88856 0.91277 1.42534 1.11868 1.42610 1.39983 1.19610 0.91095 1.12720 1.13184 0.89770 1.25590 1.00237 1.01765 0.99332 1.69835 1.29205 1.37446 1.25810 0.85143 0.79155 0.77273 0.78202 1.21754 1.22697 1.18798 1.21575 0.95122 0.95822 0.84442 0.94110 1.21911 1.00737 0.96632 1.00827 1.18522 0.96089 0.83402 1.03934 1.20261 0.96742 0.92940 1.06394 1.21133 0.97993 0.94058 0.99364 1.20943 0.92183 1.00599 1.03586 1.20527 1.00175 0.90593 0.98961 1.19498 0.92371 0.94316 1.07374 0.90773 0.91203 0.91912 0.79515 0.82906 0.84086 0.87293 0.88346 0.92509 0.89092 0.79839 0.94140 0.93500 0.92568 0.91034 0.85958 0.83664 0.83727 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.41 71.24 0.74 -0.43 16 2 C -0.19 -4.44 6.32 -18.63 -0.12 -4.56 16 3 C 0.05 1.03 11.19 83.00 0.93 1.96 16 4 N -0.47 -11.04 2.27 -520.01 -1.18 -12.22 16 5 C 0.10 1.81 5.49 85.63 0.47 2.28 16 6 C 0.50 13.81 7.71 87.66 0.68 14.48 16 7 O -0.57 -21.93 15.47 -3.05 -0.05 -21.98 16 8 N -0.60 -16.00 3.06 -788.04 -2.41 -18.42 16 9 C 0.10 1.88 6.69 86.86 0.58 2.46 16 10 C -0.15 -4.09 6.77 31.99 0.22 -3.88 16 11 C 0.17 6.09 3.12 46.19 0.14 6.24 16 12 H 0.07 2.43 7.83 -2.39 -0.02 2.41 16 13 N -0.73 -35.14 5.25 -317.30 -1.67 -36.81 16 14 C -0.23 -12.29 9.98 84.03 0.84 -11.45 16 15 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 16 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 17 N -0.97 -58.96 13.06 21.65 0.28 -58.68 16 18 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 20 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 22 C 0.14 4.64 3.21 45.34 0.15 4.79 16 23 H 0.04 1.70 7.69 -2.39 -0.02 1.68 16 24 C -0.14 -4.78 9.11 71.98 0.66 -4.12 16 25 C 0.09 2.26 6.80 39.03 0.27 2.53 16 26 C -0.14 -3.36 10.00 22.37 0.22 -3.13 16 27 C -0.11 -2.14 10.01 22.30 0.22 -1.92 16 28 C -0.15 -2.99 9.97 22.04 0.22 -2.77 16 29 C -0.08 -1.84 10.05 22.23 0.22 -1.62 16 30 C -0.13 -3.39 6.35 -20.20 -0.13 -3.52 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.15 1.61 7.82 -2.39 -0.02 1.60 16 36 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.11 1.25 7.48 -2.39 -0.02 1.24 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.37 19.90 7.51 -92.71 -0.70 19.21 16 42 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.05 1.69 6.89 -2.39 -0.02 1.68 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 46 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 47 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 48 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 49 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -76.54 403.59 4.03 -72.52 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.25 Total: 35.30 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 6.77 Total: -6.50 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -4.98 Total: -126.12 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.98 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -76.54 4.03 -72.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987133436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.427 kcal (2) G-P(sol) polarization free energy of solvation -76.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds