Wall clock time and date at job start Wed Apr 1 2020 00:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47099 * 2 1 4 4 C 1.37801 * 120.03645 * 264.98074 * 3 2 1 5 5 C 1.38709 * 120.63714 * 180.02562 * 4 3 2 6 6 C 1.37798 * 120.29747 * 359.97438 * 5 4 3 7 7 C 1.39234 * 119.67193 * 359.71017 * 6 5 4 8 8 C 1.47451 * 134.00856 * 179.57851 * 7 6 5 9 9 C 1.46903 * 126.76776 * 0.78474 * 8 7 6 10 10 O 1.21671 * 120.00225 * 352.83532 * 9 8 7 11 11 N 1.34785 * 119.99842 * 172.56034 * 9 8 7 12 12 C 1.47422 * 125.64637 * 354.33497 * 11 9 8 13 13 C 1.54910 * 104.82950 * 204.09208 * 12 11 9 14 14 C 1.55156 * 101.58112 * 322.99203 * 13 12 11 15 15 H 1.08999 * 110.71977 * 276.95621 * 14 13 12 16 16 N 1.46503 * 110.71896 * 153.86579 * 14 13 12 17 17 C 1.36943 * 119.99992 * 86.45579 * 16 14 13 18 18 H 1.07999 * 119.99800 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99899 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99855 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 119.99949 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47234 * 60.00008 * 21 19 17 23 23 H 1.48496 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47406 * 300.00338 * 21 19 17 25 25 C 1.47024 * 125.64677 * 174.02470 * 11 9 8 26 26 H 1.09001 * 109.88066 * 59.56263 * 25 11 9 27 27 C 1.53001 * 109.88328 * 298.39697 * 25 11 9 28 28 C 1.36374 * 106.46292 * 180.52674 * 8 7 6 29 29 N 1.35476 * 109.77905 * 0.23606 * 28 8 7 30 30 H 0.96995 * 124.78575 * 179.97438 * 29 28 8 31 31 C 1.37975 * 110.42634 * 0.02562 * 29 28 8 32 32 H 1.08998 * 109.46832 * 60.00057 * 1 2 3 33 33 H 1.09005 * 109.47020 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.46879 * 300.00019 * 1 2 3 35 35 H 1.08995 * 109.46879 * 239.99981 * 2 1 3 36 36 H 1.08998 * 109.46832 * 119.99943 * 2 1 3 37 37 H 1.08004 * 119.68278 * 0.02562 * 4 3 2 38 38 H 1.07999 * 119.85451 * 179.97438 * 5 4 3 39 39 H 1.08009 * 120.16495 * 180.02562 * 6 5 4 40 40 H 1.08995 * 110.36559 * 322.92659 * 12 11 9 41 41 H 1.08999 * 110.36609 * 85.25715 * 12 11 9 42 42 H 1.09001 * 111.00267 * 81.06029 * 13 12 11 43 43 H 1.08999 * 111.00700 * 204.91452 * 13 12 11 44 44 H 0.97000 * 120.00272 * 266.44717 * 16 14 13 45 45 H 0.96999 * 119.99810 * 180.02562 * 20 19 17 46 46 H 1.08989 * 109.47030 * 61.45318 * 27 25 11 47 47 H 1.09003 * 109.46841 * 181.45713 * 27 25 11 48 48 H 1.08998 * 109.46917 * 301.45107 * 27 25 11 49 49 H 1.08001 * 125.11451 * 180.20705 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0363 -1.1884 5 6 2.8248 3.3434 -1.2028 6 6 2.9631 4.0451 -0.0249 7 6 2.6288 3.4376 1.1825 8 6 2.6577 3.8731 2.5909 9 6 3.0750 5.1878 3.0964 10 8 3.5677 6.0025 2.3389 11 7 2.9070 5.4936 4.3983 12 6 2.2157 4.6560 5.3953 13 6 1.7517 5.6467 6.4921 14 6 2.9409 6.6423 6.5359 15 1 3.7442 6.2561 7.1632 16 7 2.4999 7.9557 7.0121 17 6 2.4573 8.2181 8.3554 18 1 2.7483 7.4567 9.0639 19 6 2.0400 9.4629 8.8066 20 7 1.6858 10.3910 7.9432 21 14 1.9811 9.8206 10.6390 22 1 3.3403 9.6665 11.2174 23 1 1.5056 11.2103 10.8571 24 1 1.0515 8.8694 11.2995 25 6 3.3885 6.7147 5.0607 26 1 2.9501 7.5919 4.5849 27 6 4.9148 6.7833 4.9799 28 6 2.2152 2.8168 3.3313 29 7 1.9230 1.7755 2.5153 30 1 1.5910 0.9145 2.8142 31 6 2.1653 2.1122 1.1994 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.2557 1.4958 -2.1175 38 1 3.0788 3.8134 -2.1414 39 1 3.3242 5.0629 -0.0387 40 1 1.3565 4.1602 4.9438 41 1 2.9024 3.9205 5.8144 42 1 0.8308 6.1508 6.1988 43 1 1.6303 5.1406 7.4497 44 1 2.2383 8.6396 6.3758 45 1 1.3946 11.2608 8.2584 46 1 5.2218 6.8219 3.9348 47 1 5.2660 7.6773 5.4951 48 1 5.3437 5.8996 5.4522 49 1 2.1134 2.8110 4.4064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987576855.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:26 Heat of formation + Delta-G solvation = 36.809145 kcal Electronic energy + Delta-G solvation = -29425.470091 eV Core-core repulsion = 25545.987006 eV Total energy + Delta-G solvation = -3879.483086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.70231 -39.66116 -37.45483 -37.16147 -34.53045 -34.12245 -32.00039 -31.03349 -30.70756 -29.47979 -29.19056 -28.40433 -25.31581 -24.30014 -23.70924 -23.20812 -21.98176 -21.79088 -21.24278 -19.87268 -18.60586 -17.80743 -17.21933 -16.78793 -15.96489 -15.89883 -15.55842 -14.97512 -14.89344 -14.70403 -14.48082 -14.22185 -13.77543 -13.66675 -13.52116 -13.36167 -13.11353 -12.93507 -12.74911 -12.64047 -12.25927 -12.15453 -11.86297 -11.82285 -11.66088 -11.42948 -11.34302 -11.09798 -11.02894 -10.94103 -10.81995 -10.58529 -10.27755 -10.01917 -9.76547 -9.67762 -9.53185 -8.94097 -8.45999 -8.34537 -7.82489 -7.02898 -5.81111 -3.11667 0.84223 1.42209 1.95572 2.77003 3.24444 3.41097 3.45190 3.46326 3.47148 3.86001 4.38346 4.48053 4.54781 4.57710 4.69201 4.80230 4.95760 4.98912 4.99611 5.10050 5.18032 5.27410 5.32302 5.35846 5.45153 5.46904 5.50467 5.53431 5.56318 5.66915 5.74952 5.79474 5.81822 5.96638 5.98147 6.11589 6.14270 6.29996 6.30589 6.37172 6.47465 6.49502 6.55480 6.59077 6.64326 6.82581 6.93980 6.94817 7.16614 7.64865 7.86338 8.36115 8.53199 9.47505 10.02529 10.37197 11.40965 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.002276 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.146032 B =12297.195481 C =12944.801185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.094 4.094 4 C -0.101 4.101 5 C -0.141 4.141 6 C -0.065 4.065 7 C -0.060 4.060 8 C -0.216 4.216 9 C 0.601 3.399 10 O -0.544 6.544 11 N -0.607 5.607 12 C 0.089 3.911 13 C -0.155 4.155 14 C 0.177 3.823 15 H 0.064 0.936 16 N -0.715 5.715 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.130 3.870 26 H 0.078 0.922 27 C -0.153 4.153 28 C 0.093 3.907 29 N -0.580 5.580 30 H 0.417 0.583 31 C 0.091 3.909 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.386 0.614 45 H 0.257 0.743 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.050 0.950 49 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.411 -23.727 -14.859 27.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.120 4.120 5 C -0.160 4.160 6 C -0.083 4.083 7 C -0.065 4.065 8 C -0.227 4.227 9 C 0.391 3.609 10 O -0.422 6.422 11 N -0.341 5.341 12 C -0.034 4.034 13 C -0.197 4.197 14 C 0.065 3.935 15 H 0.082 0.918 16 N -0.355 5.355 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.026 3.974 26 H 0.096 0.904 27 C -0.212 4.212 28 C -0.039 4.039 29 N -0.182 5.182 30 H 0.254 0.746 31 C -0.015 4.015 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.166 -23.346 -15.102 27.805 hybrid contribution -0.415 0.017 1.105 1.180 sum -0.580 -23.329 -13.997 27.213 Atomic orbital electron populations 1.21771 0.94761 1.01588 1.02410 1.20450 0.96095 0.92664 1.02652 1.18803 1.04521 0.96113 0.90201 1.20695 0.99863 0.95168 0.96281 1.20948 1.02464 0.94710 0.97871 1.20727 0.97154 1.00310 0.90143 1.18736 1.02736 0.92572 0.92407 1.20073 1.14943 0.95249 0.92389 1.16816 0.78373 0.85508 0.80184 1.90751 1.45929 1.50038 1.55501 1.48356 1.56291 1.21908 1.07551 1.22658 0.95759 0.94727 0.90302 1.23584 1.01736 0.97568 0.96792 1.21233 0.93865 0.88005 0.90409 0.91792 1.42346 1.78445 1.09569 1.05160 1.19143 1.37977 0.97229 0.83132 0.91077 1.24771 1.01883 0.96348 0.97674 1.69656 1.50422 1.04937 1.32669 0.86257 0.77720 0.77097 0.85001 1.21203 1.21696 1.21242 1.21860 0.94587 0.86917 0.94013 0.90383 1.22033 0.94887 1.01998 1.02237 1.22893 0.97361 0.86621 0.97005 1.41561 1.57106 1.14660 1.04828 0.74559 1.18035 1.03963 0.94841 0.84620 0.92190 0.92403 0.92914 0.90649 0.91885 0.85843 0.85801 0.84872 0.90980 0.91678 0.90511 0.90576 0.77940 0.93311 0.92104 0.91123 0.93124 0.79366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.90 37.16 0.37 -0.51 16 2 C -0.08 -0.52 6.07 -27.88 -0.17 -0.69 16 3 C -0.09 -0.88 5.15 -104.47 -0.54 -1.42 16 4 C -0.10 -0.94 9.64 -39.57 -0.38 -1.32 16 5 C -0.14 -1.50 10.03 -39.57 -0.40 -1.90 16 6 C -0.06 -0.87 9.86 -39.37 -0.39 -1.26 16 7 C -0.06 -0.83 6.27 -104.95 -0.66 -1.49 16 8 C -0.22 -3.04 6.20 -103.31 -0.64 -3.68 16 9 C 0.60 10.23 7.56 -12.75 -0.10 10.13 16 10 O -0.54 -11.01 15.48 5.21 0.08 -10.93 16 11 N -0.61 -9.62 3.06 -164.46 -0.50 -10.12 16 12 C 0.09 1.11 5.10 -2.53 -0.01 1.10 16 13 C -0.16 -2.46 6.77 -24.58 -0.17 -2.62 16 14 C 0.18 3.34 3.12 -66.09 -0.21 3.13 16 15 H 0.06 1.20 7.83 -51.93 -0.41 0.80 16 16 N -0.71 -17.25 5.25 -51.65 -0.27 -17.53 16 17 C -0.24 -6.48 9.98 -15.05 -0.15 -6.63 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 21 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 C 0.13 2.33 3.18 -66.95 -0.21 2.12 16 26 H 0.08 1.60 7.69 -51.93 -0.40 1.20 16 27 C -0.15 -2.61 9.11 37.16 0.34 -2.27 16 28 C 0.09 0.93 10.18 -16.61 -0.17 0.76 16 29 N -0.58 -4.94 5.99 -10.48 -0.06 -5.01 16 30 H 0.42 2.12 8.96 -40.82 -0.37 1.75 16 31 C 0.09 1.00 6.94 -83.96 -0.58 0.41 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 36 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 37 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.13 1.93 7.48 -52.48 -0.39 1.54 16 40 H 0.07 0.75 5.97 -51.93 -0.31 0.44 16 41 H 0.07 0.66 7.72 -51.93 -0.40 0.26 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.39 10.14 7.51 -40.82 -0.31 9.84 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.06 1.08 7.09 -51.94 -0.37 0.71 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.19 1.38 4.71 -52.49 -0.25 1.13 16 LS Contribution 394.66 15.07 5.95 5.95 Total: -1.00 -33.34 394.66 -10.66 -44.00 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -7.39 Total: 10.25 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -4.16 Total: -6.52 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.11 Total: -59.55 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.34 -10.66 -44.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987576855.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.807 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds