Wall clock time and date at job start Wed Apr 1 2020 00:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47099 * 2 1 4 4 C 1.37801 * 120.03645 * 264.98074 * 3 2 1 5 5 C 1.38709 * 120.63714 * 180.02562 * 4 3 2 6 6 C 1.37798 * 120.29747 * 359.97438 * 5 4 3 7 7 C 1.39234 * 119.67193 * 359.71017 * 6 5 4 8 8 C 1.47451 * 134.00856 * 179.57851 * 7 6 5 9 9 C 1.46903 * 126.76776 * 0.78474 * 8 7 6 10 10 O 1.21671 * 120.00225 * 352.83532 * 9 8 7 11 11 N 1.34785 * 119.99842 * 172.56034 * 9 8 7 12 12 C 1.47422 * 125.64637 * 354.33497 * 11 9 8 13 13 C 1.54910 * 104.82950 * 204.09208 * 12 11 9 14 14 C 1.55156 * 101.58112 * 322.99203 * 13 12 11 15 15 H 1.08999 * 110.71977 * 276.95621 * 14 13 12 16 16 N 1.46503 * 110.71896 * 153.86579 * 14 13 12 17 17 C 1.36943 * 119.99992 * 86.45579 * 16 14 13 18 18 H 1.07999 * 119.99800 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99899 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99855 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 119.99949 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47234 * 60.00008 * 21 19 17 23 23 H 1.48496 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47406 * 300.00338 * 21 19 17 25 25 C 1.47024 * 125.64677 * 174.02470 * 11 9 8 26 26 H 1.09001 * 109.88066 * 59.56263 * 25 11 9 27 27 C 1.53001 * 109.88328 * 298.39697 * 25 11 9 28 28 C 1.36374 * 106.46292 * 180.52674 * 8 7 6 29 29 N 1.35476 * 109.77905 * 0.23606 * 28 8 7 30 30 H 0.96995 * 124.78575 * 179.97438 * 29 28 8 31 31 C 1.37975 * 110.42634 * 0.02562 * 29 28 8 32 32 H 1.08998 * 109.46832 * 60.00057 * 1 2 3 33 33 H 1.09005 * 109.47020 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.46879 * 300.00019 * 1 2 3 35 35 H 1.08995 * 109.46879 * 239.99981 * 2 1 3 36 36 H 1.08998 * 109.46832 * 119.99943 * 2 1 3 37 37 H 1.08004 * 119.68278 * 0.02562 * 4 3 2 38 38 H 1.07999 * 119.85451 * 179.97438 * 5 4 3 39 39 H 1.08009 * 120.16495 * 180.02562 * 6 5 4 40 40 H 1.08995 * 110.36559 * 322.92659 * 12 11 9 41 41 H 1.08999 * 110.36609 * 85.25715 * 12 11 9 42 42 H 1.09001 * 111.00267 * 81.06029 * 13 12 11 43 43 H 1.08999 * 111.00700 * 204.91452 * 13 12 11 44 44 H 0.97000 * 120.00272 * 266.44717 * 16 14 13 45 45 H 0.96999 * 119.99810 * 180.02562 * 20 19 17 46 46 H 1.08989 * 109.47030 * 61.45318 * 27 25 11 47 47 H 1.09003 * 109.46841 * 181.45713 * 27 25 11 48 48 H 1.08998 * 109.46917 * 301.45107 * 27 25 11 49 49 H 1.08001 * 125.11451 * 180.20705 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0363 -1.1884 5 6 2.8248 3.3434 -1.2028 6 6 2.9631 4.0451 -0.0249 7 6 2.6288 3.4376 1.1825 8 6 2.6577 3.8731 2.5909 9 6 3.0750 5.1878 3.0964 10 8 3.5677 6.0025 2.3389 11 7 2.9070 5.4936 4.3983 12 6 2.2157 4.6560 5.3953 13 6 1.7517 5.6467 6.4921 14 6 2.9409 6.6423 6.5359 15 1 3.7442 6.2561 7.1632 16 7 2.4999 7.9557 7.0121 17 6 2.4573 8.2181 8.3554 18 1 2.7483 7.4567 9.0639 19 6 2.0400 9.4629 8.8066 20 7 1.6858 10.3910 7.9432 21 14 1.9811 9.8206 10.6390 22 1 3.3403 9.6665 11.2174 23 1 1.5056 11.2103 10.8571 24 1 1.0515 8.8694 11.2995 25 6 3.3885 6.7147 5.0607 26 1 2.9501 7.5919 4.5849 27 6 4.9148 6.7833 4.9799 28 6 2.2152 2.8168 3.3313 29 7 1.9230 1.7755 2.5153 30 1 1.5910 0.9145 2.8142 31 6 2.1653 2.1122 1.1994 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.2557 1.4958 -2.1175 38 1 3.0788 3.8134 -2.1414 39 1 3.3242 5.0629 -0.0387 40 1 1.3565 4.1602 4.9438 41 1 2.9024 3.9205 5.8144 42 1 0.8308 6.1508 6.1988 43 1 1.6303 5.1406 7.4497 44 1 2.2383 8.6396 6.3758 45 1 1.3946 11.2608 8.2584 46 1 5.2218 6.8219 3.9348 47 1 5.2660 7.6773 5.4951 48 1 5.3437 5.8996 5.4522 49 1 2.1134 2.8110 4.4064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987576855.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:25 Heat of formation + Delta-G solvation = 16.066867 kcal Electronic energy + Delta-G solvation = -29426.369544 eV Core-core repulsion = 25545.987006 eV Total energy + Delta-G solvation = -3880.382538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.56173 -40.93383 -38.60301 -38.20854 -35.89721 -35.19820 -33.54506 -32.46410 -31.73839 -30.77902 -30.07996 -29.40269 -26.92113 -25.17149 -24.84671 -24.73260 -22.82633 -22.61458 -22.38252 -21.30255 -19.74708 -19.13005 -18.64647 -17.87194 -17.22487 -16.88086 -16.54019 -16.42268 -15.91214 -15.66125 -15.51867 -15.36842 -15.24595 -14.88006 -14.68264 -14.49404 -14.27272 -13.99282 -13.81918 -13.63621 -13.56478 -13.24964 -13.03887 -12.88804 -12.80716 -12.58360 -12.57324 -12.43644 -12.36955 -12.18986 -12.08236 -11.82060 -11.70090 -11.66831 -11.51849 -10.91914 -10.84318 -10.55953 -9.64841 -9.27887 -9.00927 -8.67848 -7.91745 -5.22007 -0.00928 0.57064 1.01002 1.50211 1.53418 1.59235 1.89393 2.14231 2.38031 2.59529 2.92900 3.39413 3.56489 3.66920 3.74954 3.79664 3.86735 4.01063 4.04043 4.13878 4.19525 4.33847 4.34712 4.39435 4.41415 4.48722 4.52226 4.57168 4.61845 4.67968 4.68853 4.75396 4.84675 4.92658 5.05107 5.06299 5.12037 5.18074 5.21871 5.25615 5.38984 5.40373 5.49437 5.52710 5.53956 5.56990 5.64199 5.71786 6.12688 6.28075 6.53631 6.64244 7.27340 7.34179 8.06756 8.30649 9.31820 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.002276 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.146032 B =12297.195481 C =12944.801185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.084 4.084 4 C -0.108 4.108 5 C -0.134 4.134 6 C -0.107 4.107 7 C -0.090 4.090 8 C -0.267 4.267 9 C 0.595 3.405 10 O -0.595 6.595 11 N -0.608 5.608 12 C 0.092 3.908 13 C -0.146 4.146 14 C 0.172 3.828 15 H 0.074 0.926 16 N -0.731 5.731 17 C -0.234 4.234 18 H 0.086 0.914 19 C -0.079 4.079 20 N -0.973 5.973 21 Si 0.975 3.025 22 H -0.277 1.277 23 H -0.302 1.302 24 H -0.274 1.274 25 C 0.135 3.865 26 H 0.038 0.962 27 C -0.143 4.143 28 C 0.134 3.866 29 N -0.558 5.558 30 H 0.439 0.561 31 C 0.082 3.918 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.155 0.845 38 H 0.140 0.860 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.369 0.631 45 H 0.249 0.751 46 H 0.045 0.955 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 -29.030 -13.918 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.086 4.086 4 C -0.127 4.127 5 C -0.153 4.153 6 C -0.126 4.126 7 C -0.094 4.094 8 C -0.278 4.278 9 C 0.388 3.612 10 O -0.477 6.477 11 N -0.341 5.341 12 C -0.029 4.029 13 C -0.187 4.187 14 C 0.062 3.938 15 H 0.092 0.908 16 N -0.370 5.370 17 C -0.366 4.366 18 H 0.104 0.896 19 C -0.271 4.271 20 N -0.624 5.624 21 Si 0.804 3.196 22 H -0.203 1.203 23 H -0.229 1.229 24 H -0.199 1.199 25 C 0.030 3.970 26 H 0.056 0.944 27 C -0.201 4.201 28 C 0.000 4.000 29 N -0.160 5.160 30 H 0.280 0.720 31 C -0.023 4.023 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.172 0.828 38 H 0.157 0.843 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.876 -28.776 -14.152 32.080 hybrid contribution -0.192 1.543 0.688 1.700 sum -1.068 -27.233 -13.463 30.398 Atomic orbital electron populations 1.21759 0.94266 1.02542 1.01816 1.20538 0.96313 0.90504 1.04243 1.19245 1.02476 0.97482 0.89412 1.21074 0.99247 0.94542 0.97796 1.21195 1.01252 0.95417 0.97455 1.20678 1.00263 0.99764 0.91871 1.19031 1.03612 0.94291 0.92452 1.19880 1.19362 0.95148 0.93398 1.17346 0.77575 0.86355 0.79899 1.90714 1.48375 1.51888 1.56768 1.48357 1.56386 1.21446 1.07893 1.22923 0.97488 0.94056 0.88451 1.23394 0.98948 0.97252 0.99128 1.21438 0.95423 0.86463 0.90477 0.90786 1.42549 1.78847 1.11306 1.04298 1.19599 1.35485 0.97149 0.84335 0.89593 1.25616 1.03029 0.96616 1.01853 1.69843 1.52844 1.05158 1.34559 0.85187 0.78022 0.76273 0.80112 1.20321 1.22922 1.19950 1.21577 0.94894 0.86966 0.93529 0.94389 1.21916 0.94379 1.02459 1.01327 1.23212 0.93546 0.85202 0.98045 1.41531 1.55552 1.15186 1.03756 0.71967 1.18140 1.04258 0.93848 0.86074 0.92882 0.90681 0.93501 0.89105 0.90359 0.82777 0.84266 0.88003 0.88001 0.87522 0.92913 0.88477 0.79915 0.94204 0.93588 0.92262 0.90846 0.75928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.90 71.98 0.71 -0.47 16 2 C -0.08 -0.67 6.07 29.85 0.18 -0.49 16 3 C -0.08 -1.33 5.15 -19.77 -0.10 -1.43 16 4 C -0.11 -1.78 9.64 22.28 0.21 -1.56 16 5 C -0.13 -2.88 10.03 22.28 0.22 -2.66 16 6 C -0.11 -3.11 9.86 22.40 0.22 -2.88 16 7 C -0.09 -2.52 6.27 -20.08 -0.13 -2.64 16 8 C -0.27 -7.40 6.20 -19.01 -0.12 -7.52 16 9 C 0.60 20.96 7.56 86.51 0.65 21.62 16 10 O -0.60 -26.28 15.48 -4.26 -0.07 -26.35 16 11 N -0.61 -19.11 3.06 -792.44 -2.43 -21.53 16 12 C 0.09 1.99 5.10 86.86 0.44 2.44 16 13 C -0.15 -4.33 6.77 31.99 0.22 -4.11 16 14 C 0.17 6.41 3.12 46.18 0.14 6.55 16 15 H 0.07 2.64 7.83 -2.39 -0.02 2.62 16 16 N -0.73 -36.13 5.25 -317.31 -1.67 -37.80 16 17 C -0.23 -12.45 9.98 84.03 0.84 -11.61 16 18 H 0.09 4.23 7.83 -2.91 -0.02 4.21 16 19 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 20 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 21 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.13 5.02 3.18 45.34 0.14 5.17 16 26 H 0.04 1.71 7.69 -2.39 -0.02 1.69 16 27 C -0.14 -5.02 9.11 71.98 0.66 -4.36 16 28 C 0.13 2.21 10.18 83.70 0.85 3.07 16 29 N -0.56 -7.31 5.99 -187.08 -1.12 -8.43 16 30 H 0.44 2.14 8.96 -92.71 -0.83 1.31 16 31 C 0.08 1.63 6.94 38.91 0.27 1.90 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.09 0.56 8.05 -2.39 -0.02 0.54 16 36 H 0.08 0.47 8.12 -2.39 -0.02 0.45 16 37 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.10 3.45 7.48 -2.91 -0.02 3.43 16 40 H 0.10 1.64 5.97 -2.39 -0.01 1.63 16 41 H 0.11 1.54 7.72 -2.39 -0.02 1.52 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 43 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.37 20.50 7.51 -92.71 -0.70 19.81 16 45 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 46 H 0.04 1.74 7.09 -2.39 -0.02 1.72 16 47 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 49 H 0.22 1.95 4.71 -2.91 -0.01 1.93 16 Total: -1.00 -79.78 394.66 2.38 -77.41 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: -0.54 Total: 32.16 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.89 Total: -3.01 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -4.93 Total: -127.48 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.07 Total: -26.35 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -79.78 2.38 -77.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987576855.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.474 kcal (2) G-P(sol) polarization free energy of solvation -79.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds