Wall clock time and date at job start Wed Apr 1 2020 00:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34237 * 126.50187 * 2 1 4 4 N 1.36830 * 109.92740 * 180.15025 * 3 2 1 5 5 C 1.46505 * 125.06077 * 179.81969 * 4 3 2 6 6 C 1.50701 * 109.47105 * 264.69506 * 5 4 3 7 7 O 1.21288 * 119.99675 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00203 * 179.97438 * 6 5 4 9 9 C 1.47418 * 125.64700 * 0.06380 * 8 6 5 10 10 C 1.54915 * 104.83107 * 204.07770 * 9 8 6 11 11 H 1.09002 * 111.00539 * 81.06145 * 10 9 8 12 12 N 1.46500 * 111.03417 * 204.89999 * 10 9 8 13 13 C 1.36934 * 119.99978 * 270.38994 * 12 10 9 14 14 H 1.07995 * 120.00129 * 0.02562 * 13 12 10 15 15 C 1.38818 * 119.99952 * 180.02562 * 13 12 10 16 16 N 1.31613 * 119.99801 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99883 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47364 * 59.99918 * 17 15 13 19 19 H 1.48499 * 109.47060 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47059 * 300.00056 * 17 15 13 21 21 C 1.55154 * 101.58176 * 322.98725 * 10 9 8 22 22 C 1.47029 * 125.64802 * 180.02562 * 8 6 5 23 23 H 1.08993 * 109.88066 * 59.57140 * 22 8 6 24 24 C 1.52995 * 109.88243 * 298.40730 * 22 8 6 25 25 C 1.37689 * 109.87789 * 359.55450 * 4 3 2 26 26 C 1.39122 * 133.51274 * 180.25853 * 25 4 3 27 27 C 1.37744 * 119.78041 * 179.97438 * 26 25 4 28 28 C 1.38833 * 120.66810 * 359.97438 * 27 26 25 29 29 C 1.36625 * 120.52567 * 0.02562 * 28 27 26 30 30 C 1.39630 * 119.76297 * 359.97438 * 29 28 27 31 31 H 1.08998 * 109.46649 * 270.33402 * 1 2 3 32 32 H 1.08991 * 109.47041 * 30.33263 * 1 2 3 33 33 H 1.08999 * 109.47044 * 150.33914 * 1 2 3 34 34 H 1.07993 * 125.03548 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.47171 * 144.69885 * 5 4 3 36 36 H 1.08997 * 109.47046 * 24.69763 * 5 4 3 37 37 H 1.08995 * 110.37279 * 85.24185 * 9 8 6 38 38 H 1.08997 * 110.36990 * 322.91383 * 9 8 6 39 39 H 0.97001 * 120.00052 * 90.39778 * 12 10 9 40 40 H 0.97006 * 120.00093 * 179.97438 * 16 15 13 41 41 H 1.09004 * 110.72212 * 153.86391 * 21 10 9 42 42 H 1.08997 * 110.72125 * 276.96414 * 21 10 9 43 43 H 1.09008 * 109.47549 * 302.19544 * 24 22 8 44 44 H 1.09001 * 109.47247 * 62.19161 * 24 22 8 45 45 H 1.09005 * 109.47241 * 182.19076 * 24 22 8 46 46 H 1.08008 * 120.11041 * 0.02755 * 26 25 4 47 47 H 1.07999 * 119.66940 * 180.02562 * 27 26 25 48 48 H 1.08006 * 119.73565 * 179.97438 * 28 27 26 49 49 H 1.07999 * 120.11334 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6170 0.6887 -0.0034 5 6 4.7657 1.5980 -0.0082 6 6 5.2368 1.8048 -1.4246 7 8 4.6686 1.2477 -2.3400 8 7 6.2888 2.6093 -1.6743 9 6 7.0677 3.3444 -0.6612 10 6 7.6945 4.5345 -1.4297 11 1 6.9770 5.3470 -1.5444 12 7 8.9140 5.0042 -0.7675 13 6 8.8398 5.9751 0.1953 14 1 7.8822 6.3942 0.4668 15 6 9.9954 6.4205 0.8224 16 7 11.1624 5.9101 0.4911 17 14 9.8940 7.7444 2.1363 18 1 9.0401 7.2683 3.2540 19 1 11.2568 8.0416 2.6458 20 1 9.3045 8.9764 1.5532 21 6 8.0211 3.8834 -2.7996 22 6 6.8502 2.8987 -3.0020 23 1 6.0885 3.3533 -3.6354 24 6 7.3616 1.6073 -3.6434 25 6 3.6963 -0.6858 0.0044 26 6 4.7588 -1.5840 0.0096 27 6 4.5095 -2.9386 0.0178 28 6 3.2069 -3.4189 0.0213 29 6 2.1487 -2.5548 0.0163 30 6 2.3784 -1.1775 0.0080 31 1 -0.3632 0.0060 1.0277 32 1 -0.3633 0.8869 -0.5190 33 1 -0.3633 -0.8930 -0.5086 34 1 1.9635 2.1034 -0.0004 35 1 5.5729 1.1668 0.5839 36 1 4.4723 2.5562 0.4207 37 1 7.8487 2.7069 -0.2469 38 1 6.4129 3.7071 0.1311 39 1 9.7741 4.6276 -1.0112 40 1 11.9700 6.2216 0.9290 41 1 8.0345 4.6340 -3.5900 42 1 8.9723 3.3528 -2.7575 43 1 8.1082 1.1499 -2.9941 44 1 6.5298 0.9169 -3.7832 45 1 7.8112 1.8349 -4.6100 46 1 5.7758 -1.2202 0.0082 47 1 5.3357 -3.6342 0.0222 48 1 3.0287 -4.4842 0.0273 49 1 1.1381 -2.9357 0.0195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989540375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:11 Heat of formation + Delta-G solvation = 42.607662 kcal Electronic energy + Delta-G solvation = -29460.393239 eV Core-core repulsion = 25581.161596 eV Total energy + Delta-G solvation = -3879.231643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.50849 -39.94728 -37.65728 -36.88574 -34.31710 -33.85615 -32.02127 -31.48203 -30.33487 -29.82952 -28.61600 -28.29666 -25.62491 -25.41643 -23.95878 -22.83118 -22.07492 -21.20938 -20.40113 -19.61512 -18.90289 -17.56561 -17.13863 -16.77241 -16.63943 -16.08269 -15.48870 -15.24833 -14.85246 -14.47177 -14.19607 -13.90104 -13.85984 -13.72183 -13.41166 -13.19647 -13.17309 -12.91567 -12.80274 -12.77156 -12.47693 -12.31032 -12.17263 -12.04585 -11.79830 -11.55250 -11.43859 -11.24724 -11.09766 -10.87175 -10.82219 -10.74037 -10.42017 -10.14436 -9.90462 -9.83184 -9.47969 -9.12542 -8.50835 -8.17784 -7.57227 -7.20738 -5.94965 -3.26729 1.11395 1.60984 2.43296 2.57892 2.70961 3.18360 3.32798 3.38197 3.39120 3.91155 4.36745 4.49444 4.54464 4.61903 4.70317 4.89771 4.95635 4.96532 5.02094 5.08265 5.14850 5.22471 5.29041 5.39177 5.45529 5.49742 5.57826 5.60968 5.67523 5.68282 5.71606 5.72442 5.83936 5.90758 5.95980 6.00360 6.07144 6.13685 6.24296 6.34235 6.35363 6.46400 6.51358 6.58523 6.71226 6.73143 6.79119 7.18665 7.22460 7.52370 7.62169 8.16149 8.22495 9.34283 9.86944 10.21698 11.26693 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.002544 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.624319 B =11004.560979 C =11566.855626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.178 4.178 3 C 0.061 3.939 4 N -0.465 5.465 5 C 0.095 3.905 6 C 0.507 3.493 7 O -0.531 6.531 8 N -0.606 5.606 9 C 0.068 3.932 10 C 0.174 3.826 11 H 0.067 0.933 12 N -0.711 5.711 13 C -0.253 4.253 14 H 0.072 0.928 15 C -0.006 4.006 16 N -0.928 5.928 17 Si 0.909 3.091 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.284 1.284 21 C -0.137 4.137 22 C 0.140 3.860 23 H 0.072 0.928 24 C -0.160 4.160 25 C 0.112 3.888 26 C -0.124 4.124 27 C -0.102 4.102 28 C -0.151 4.151 29 C -0.073 4.073 30 C -0.102 4.102 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.165 0.835 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.388 0.612 40 H 0.258 0.742 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.894 -13.343 -1.997 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.185 4.185 3 C -0.063 4.063 4 N -0.147 5.147 5 C -0.031 4.031 6 C 0.293 3.707 7 O -0.408 6.408 8 N -0.341 5.341 9 C -0.058 4.058 10 C 0.061 3.939 11 H 0.085 0.915 12 N -0.351 5.351 13 C -0.384 4.384 14 H 0.090 0.910 15 C -0.203 4.203 16 N -0.575 5.575 17 Si 0.739 3.261 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.211 1.211 21 C -0.176 4.176 22 C 0.037 3.963 23 H 0.090 0.910 24 C -0.218 4.218 25 C 0.007 3.993 26 C -0.144 4.144 27 C -0.122 4.122 28 C -0.170 4.170 29 C -0.091 4.091 30 C -0.107 4.107 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.182 0.818 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.222 0.778 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.133 0.867 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.003 -13.275 -2.337 20.924 hybrid contribution 0.589 0.761 0.720 1.202 sum -15.414 -12.514 -1.617 19.920 Atomic orbital electron populations 1.20047 0.89544 1.02054 1.01361 1.20202 0.95074 0.90744 1.12451 1.21543 0.81552 0.99198 1.04051 1.43333 1.05019 1.03742 1.62627 1.21585 0.89583 0.95955 0.95939 1.20474 0.79894 0.79198 0.91160 1.90734 1.55980 1.48124 1.45921 1.48648 1.30089 1.45766 1.09617 1.23604 0.94898 0.95582 0.91731 1.21263 0.90629 0.92570 0.89408 0.91536 1.42315 1.02960 1.45175 1.44628 1.19184 0.93354 1.13147 1.12736 0.90996 1.24781 0.95286 1.00058 1.00180 1.69643 0.97430 1.45355 1.45072 0.86257 0.76696 0.81609 0.81521 1.21090 1.21576 1.21095 1.23027 0.97306 0.97787 0.99444 1.21522 0.95262 0.95630 0.83899 0.90992 1.22121 1.01512 0.97693 1.00507 1.18171 0.95473 0.82569 1.03110 1.20028 0.96595 0.92321 1.05468 1.20755 0.96950 0.94031 1.00435 1.20571 0.92478 0.99267 1.04659 1.20192 0.98854 0.90859 0.99223 1.19052 0.91805 0.93183 1.06639 0.92105 0.92042 0.92005 0.81776 0.86773 0.86221 0.90983 0.91285 0.77786 0.93167 0.90217 0.90280 0.92533 0.91699 0.91800 0.86689 0.85981 0.86304 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.41 36.01 0.37 -0.28 16 2 C -0.18 -2.18 6.32 -102.71 -0.65 -2.83 16 3 C 0.06 0.74 11.19 -16.73 -0.19 0.56 16 4 N -0.47 -6.21 2.27 -115.71 -0.26 -6.48 16 5 C 0.10 1.14 5.49 -5.19 -0.03 1.11 16 6 C 0.51 7.51 7.71 -10.99 -0.08 7.43 16 7 O -0.53 -9.66 15.47 5.55 0.09 -9.57 16 8 N -0.61 -8.73 3.07 -163.02 -0.50 -9.23 16 9 C 0.07 1.02 6.39 -2.53 -0.02 1.01 16 10 C 0.17 3.01 3.70 -65.78 -0.24 2.76 16 11 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 12 N -0.71 -15.89 5.26 -51.35 -0.27 -16.16 16 13 C -0.25 -6.39 9.97 -15.06 -0.15 -6.54 16 14 H 0.07 1.75 7.83 -52.49 -0.41 1.33 16 15 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 16 N -0.93 -26.25 13.06 55.49 0.72 -25.52 16 17 Si 0.91 20.97 29.55 -169.99 -5.02 15.94 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.14 -2.01 6.11 -24.90 -0.15 -2.16 16 22 C 0.14 1.98 3.46 -66.95 -0.23 1.75 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 C -0.16 -2.15 9.10 37.15 0.34 -1.81 16 25 C 0.11 1.61 6.80 -83.99 -0.57 1.04 16 26 C -0.12 -1.63 10.00 -39.43 -0.39 -2.03 16 27 C -0.10 -1.18 10.01 -39.54 -0.40 -1.57 16 28 C -0.15 -1.65 9.97 -39.94 -0.40 -2.05 16 29 C -0.07 -0.86 10.05 -39.64 -0.40 -1.26 16 30 C -0.10 -1.40 6.35 -105.14 -0.67 -2.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.12 1.16 7.82 -51.93 -0.41 0.75 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 0.97 7.48 -51.93 -0.39 0.58 16 39 H 0.39 9.31 7.73 -40.82 -0.32 8.99 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.19 7.71 -51.93 -0.40 0.79 16 43 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 44 H 0.06 0.98 6.90 -51.93 -0.36 0.62 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 47 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 48 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 49 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -31.44 403.99 -10.86 -42.30 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -7.76 Total: 9.83 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -3.95 Total: -7.20 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.31 Total: -57.38 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.44 -10.86 -42.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989540375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.908 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds