Wall clock time and date at job start Wed Apr 1 2020 00:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34237 * 126.50187 * 2 1 4 4 N 1.36830 * 109.92740 * 180.15025 * 3 2 1 5 5 C 1.46505 * 125.06077 * 179.81969 * 4 3 2 6 6 C 1.50701 * 109.47105 * 264.69506 * 5 4 3 7 7 O 1.21288 * 119.99675 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00203 * 179.97438 * 6 5 4 9 9 C 1.47418 * 125.64700 * 0.06380 * 8 6 5 10 10 C 1.54915 * 104.83107 * 204.07770 * 9 8 6 11 11 H 1.09002 * 111.00539 * 81.06145 * 10 9 8 12 12 N 1.46500 * 111.03417 * 204.89999 * 10 9 8 13 13 C 1.36934 * 119.99978 * 270.38994 * 12 10 9 14 14 H 1.07995 * 120.00129 * 0.02562 * 13 12 10 15 15 C 1.38818 * 119.99952 * 180.02562 * 13 12 10 16 16 N 1.31613 * 119.99801 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99883 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47364 * 59.99918 * 17 15 13 19 19 H 1.48499 * 109.47060 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47059 * 300.00056 * 17 15 13 21 21 C 1.55154 * 101.58176 * 322.98725 * 10 9 8 22 22 C 1.47029 * 125.64802 * 180.02562 * 8 6 5 23 23 H 1.08993 * 109.88066 * 59.57140 * 22 8 6 24 24 C 1.52995 * 109.88243 * 298.40730 * 22 8 6 25 25 C 1.37689 * 109.87789 * 359.55450 * 4 3 2 26 26 C 1.39122 * 133.51274 * 180.25853 * 25 4 3 27 27 C 1.37744 * 119.78041 * 179.97438 * 26 25 4 28 28 C 1.38833 * 120.66810 * 359.97438 * 27 26 25 29 29 C 1.36625 * 120.52567 * 0.02562 * 28 27 26 30 30 C 1.39630 * 119.76297 * 359.97438 * 29 28 27 31 31 H 1.08998 * 109.46649 * 270.33402 * 1 2 3 32 32 H 1.08991 * 109.47041 * 30.33263 * 1 2 3 33 33 H 1.08999 * 109.47044 * 150.33914 * 1 2 3 34 34 H 1.07993 * 125.03548 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.47171 * 144.69885 * 5 4 3 36 36 H 1.08997 * 109.47046 * 24.69763 * 5 4 3 37 37 H 1.08995 * 110.37279 * 85.24185 * 9 8 6 38 38 H 1.08997 * 110.36990 * 322.91383 * 9 8 6 39 39 H 0.97001 * 120.00052 * 90.39778 * 12 10 9 40 40 H 0.97006 * 120.00093 * 179.97438 * 16 15 13 41 41 H 1.09004 * 110.72212 * 153.86391 * 21 10 9 42 42 H 1.08997 * 110.72125 * 276.96414 * 21 10 9 43 43 H 1.09008 * 109.47549 * 302.19544 * 24 22 8 44 44 H 1.09001 * 109.47247 * 62.19161 * 24 22 8 45 45 H 1.09005 * 109.47241 * 182.19076 * 24 22 8 46 46 H 1.08008 * 120.11041 * 0.02755 * 26 25 4 47 47 H 1.07999 * 119.66940 * 180.02562 * 27 26 25 48 48 H 1.08006 * 119.73565 * 179.97438 * 28 27 26 49 49 H 1.07999 * 120.11334 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6170 0.6887 -0.0034 5 6 4.7657 1.5980 -0.0082 6 6 5.2368 1.8048 -1.4246 7 8 4.6686 1.2477 -2.3400 8 7 6.2888 2.6093 -1.6743 9 6 7.0677 3.3444 -0.6612 10 6 7.6945 4.5345 -1.4297 11 1 6.9770 5.3470 -1.5444 12 7 8.9140 5.0042 -0.7675 13 6 8.8398 5.9751 0.1953 14 1 7.8822 6.3942 0.4668 15 6 9.9954 6.4205 0.8224 16 7 11.1624 5.9101 0.4911 17 14 9.8940 7.7444 2.1363 18 1 9.0401 7.2683 3.2540 19 1 11.2568 8.0416 2.6458 20 1 9.3045 8.9764 1.5532 21 6 8.0211 3.8834 -2.7996 22 6 6.8502 2.8987 -3.0020 23 1 6.0885 3.3533 -3.6354 24 6 7.3616 1.6073 -3.6434 25 6 3.6963 -0.6858 0.0044 26 6 4.7588 -1.5840 0.0096 27 6 4.5095 -2.9386 0.0178 28 6 3.2069 -3.4189 0.0213 29 6 2.1487 -2.5548 0.0163 30 6 2.3784 -1.1775 0.0080 31 1 -0.3632 0.0060 1.0277 32 1 -0.3633 0.8869 -0.5190 33 1 -0.3633 -0.8930 -0.5086 34 1 1.9635 2.1034 -0.0004 35 1 5.5729 1.1668 0.5839 36 1 4.4723 2.5562 0.4207 37 1 7.8487 2.7069 -0.2469 38 1 6.4129 3.7071 0.1311 39 1 9.7741 4.6276 -1.0112 40 1 11.9700 6.2216 0.9290 41 1 8.0345 4.6340 -3.5900 42 1 8.9723 3.3528 -2.7575 43 1 8.1082 1.1499 -2.9941 44 1 6.5298 0.9169 -3.7832 45 1 7.8112 1.8349 -4.6100 46 1 5.7758 -1.2202 0.0082 47 1 5.3357 -3.6342 0.0222 48 1 3.0287 -4.4842 0.0273 49 1 1.1381 -2.9357 0.0195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989540375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:10 Heat of formation + Delta-G solvation = 26.916304 kcal Electronic energy + Delta-G solvation = -29461.073667 eV Core-core repulsion = 25581.161596 eV Total energy + Delta-G solvation = -3879.912071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.43387 -41.14059 -38.89393 -37.83626 -36.00395 -34.77777 -33.35468 -33.01002 -31.26535 -30.68307 -30.10301 -29.27281 -26.79829 -26.39629 -25.71992 -23.79343 -23.14733 -22.25587 -21.75734 -20.52036 -20.06652 -19.26174 -18.39229 -17.82396 -17.54448 -17.28599 -16.67748 -16.32083 -16.20495 -15.72815 -15.40343 -15.23244 -14.97108 -14.84953 -14.67017 -14.35102 -14.23652 -14.01418 -13.90004 -13.60298 -13.58160 -13.47563 -13.14758 -13.02279 -12.94530 -12.85410 -12.81389 -12.48068 -12.37467 -12.23899 -12.15094 -12.05622 -11.75137 -11.69426 -11.52622 -11.10088 -10.91523 -10.40692 -9.75953 -9.10669 -9.05864 -8.46689 -7.94488 -5.24460 0.20775 0.68796 1.41409 1.46899 1.51789 1.52774 1.58671 1.81581 2.09375 2.57175 2.98936 3.27657 3.36997 3.65125 3.70808 3.77162 3.81367 3.87855 3.94605 4.03505 4.10296 4.12461 4.26305 4.28139 4.42275 4.43944 4.47266 4.47883 4.65085 4.67669 4.72195 4.81892 4.85373 4.87768 4.96807 5.00999 5.02380 5.09925 5.17261 5.20717 5.31015 5.33925 5.35760 5.55105 5.58734 5.69928 5.86565 5.90665 6.26123 6.29385 6.30932 6.44599 6.99303 7.34432 8.05649 8.29213 9.28084 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.002544 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.624319 B =11004.560979 C =11566.855626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.189 4.189 3 C 0.046 3.954 4 N -0.473 5.473 5 C 0.097 3.903 6 C 0.508 3.492 7 O -0.566 6.566 8 N -0.603 5.603 9 C 0.082 3.918 10 C 0.167 3.833 11 H 0.067 0.933 12 N -0.723 5.723 13 C -0.243 4.243 14 H 0.082 0.918 15 C -0.069 4.069 16 N -0.967 5.967 17 Si 0.968 3.032 18 H -0.276 1.276 19 H -0.301 1.301 20 H -0.279 1.279 21 C -0.125 4.125 22 C 0.140 3.860 23 H 0.075 0.925 24 C -0.152 4.152 25 C 0.084 3.916 26 C -0.147 4.147 27 C -0.105 4.105 28 C -0.153 4.153 29 C -0.081 4.081 30 C -0.129 4.129 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.189 0.811 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.114 0.886 47 H 0.144 0.856 48 H 0.148 0.852 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.677 -13.639 -1.686 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.196 4.196 3 C -0.078 4.078 4 N -0.155 5.155 5 C -0.028 4.028 6 C 0.296 3.704 7 O -0.445 6.445 8 N -0.337 5.337 9 C -0.043 4.043 10 C 0.056 3.944 11 H 0.085 0.915 12 N -0.362 5.362 13 C -0.374 4.374 14 H 0.100 0.900 15 C -0.262 4.262 16 N -0.617 5.617 17 Si 0.797 3.203 18 H -0.202 1.202 19 H -0.228 1.228 20 H -0.206 1.206 21 C -0.164 4.164 22 C 0.037 3.963 23 H 0.093 0.907 24 C -0.210 4.210 25 C -0.021 4.021 26 C -0.168 4.168 27 C -0.124 4.124 28 C -0.172 4.172 29 C -0.099 4.099 30 C -0.134 4.134 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.206 0.794 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.209 0.791 40 H 0.060 0.940 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.132 0.868 47 H 0.162 0.838 48 H 0.165 0.835 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.846 -13.578 -2.033 22.516 hybrid contribution 1.067 0.761 0.537 1.417 sum -16.779 -12.817 -1.496 21.167 Atomic orbital electron populations 1.20099 0.87486 1.02776 1.02313 1.20662 0.96597 0.90352 1.11954 1.22051 0.81240 1.00471 1.04044 1.43469 1.05602 1.03602 1.62857 1.21690 0.89872 0.97178 0.94044 1.20948 0.79199 0.78233 0.92002 1.90719 1.57028 1.49416 1.47351 1.48637 1.29964 1.45622 1.09501 1.23269 0.94947 0.94420 0.91704 1.21429 0.89005 0.93314 0.90658 0.91457 1.42432 1.04101 1.44984 1.44634 1.19586 0.93413 1.12458 1.11986 0.90013 1.25501 0.95261 1.02618 1.02780 1.69791 0.97827 1.47281 1.46754 0.85303 0.76001 0.79493 0.79491 1.20181 1.22762 1.20556 1.22924 0.97306 0.97872 0.98254 1.21555 0.95017 0.95776 0.83998 0.90731 1.22034 1.00682 0.96814 1.01429 1.18530 0.96223 0.83327 1.04064 1.20237 0.96532 0.93214 1.06793 1.21118 0.98183 0.93810 0.99337 1.20948 0.91984 1.00713 1.03545 1.20546 1.00269 0.90424 0.98688 1.19501 0.92087 0.94438 1.07349 0.90951 0.90941 0.91641 0.79408 0.85800 0.83621 0.91857 0.89720 0.79056 0.94035 0.89057 0.90633 0.92906 0.93486 0.89849 0.86807 0.83804 0.83469 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.41 71.24 0.74 -0.39 16 2 C -0.19 -4.46 6.32 -18.62 -0.12 -4.58 16 3 C 0.05 1.07 11.19 83.00 0.93 1.99 16 4 N -0.47 -12.34 2.27 -520.00 -1.18 -13.52 16 5 C 0.10 2.22 5.49 85.63 0.47 2.69 16 6 C 0.51 14.64 7.71 87.66 0.68 15.32 16 7 O -0.57 -20.50 15.47 -3.05 -0.05 -20.55 16 8 N -0.60 -16.64 3.07 -788.06 -2.42 -19.06 16 9 C 0.08 2.36 6.39 86.86 0.55 2.92 16 10 C 0.17 5.54 3.70 46.38 0.17 5.72 16 11 H 0.07 2.26 8.11 -2.39 -0.02 2.24 16 12 N -0.72 -31.89 5.26 -316.37 -1.66 -33.56 16 13 C -0.24 -12.04 9.97 84.04 0.84 -11.20 16 14 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 15 C -0.07 -3.64 5.50 84.86 0.47 -3.18 16 16 N -0.97 -55.42 13.06 21.65 0.28 -55.14 16 17 Si 0.97 42.95 29.55 68.60 2.03 44.98 16 18 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 C -0.12 -3.50 6.11 31.78 0.19 -3.31 16 22 C 0.14 3.77 3.46 45.34 0.16 3.93 16 23 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 24 C -0.15 -3.94 9.10 71.98 0.65 -3.28 16 25 C 0.08 2.40 6.80 39.03 0.27 2.67 16 26 C -0.15 -3.90 10.00 22.37 0.22 -3.68 16 27 C -0.11 -2.33 10.01 22.30 0.22 -2.11 16 28 C -0.15 -3.11 9.97 22.03 0.22 -2.89 16 29 C -0.08 -1.81 10.05 22.23 0.22 -1.59 16 30 C -0.13 -3.47 6.35 -20.20 -0.13 -3.60 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.15 2.49 7.82 -2.39 -0.02 2.47 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.08 2.19 7.48 -2.39 -0.02 2.17 16 39 H 0.38 18.19 7.73 -92.71 -0.72 17.48 16 40 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.08 2.20 7.71 -2.39 -0.02 2.19 16 43 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.05 1.40 6.90 -2.39 -0.02 1.39 16 45 H 0.08 1.81 8.14 -2.38 -0.02 1.80 16 46 H 0.11 2.87 8.06 -2.91 -0.02 2.84 16 47 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 48 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 49 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -67.97 403.99 3.99 -63.97 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: 0.23 Total: 37.42 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 6.76 Total: -4.56 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -4.98 Total: -121.27 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -67.97 3.99 -63.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989540375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.891 kcal (2) G-P(sol) polarization free energy of solvation -67.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds