Wall clock time and date at job start Wed Apr 1 2020 00:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34238 * 126.49969 * 2 1 4 4 N 1.36830 * 109.92791 * 180.19095 * 3 2 1 5 5 C 1.46507 * 125.06120 * 179.81545 * 4 3 2 6 6 C 1.50702 * 109.46847 * 264.70217 * 5 4 3 7 7 O 1.21283 * 120.00407 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99579 * 180.02562 * 6 5 4 9 9 C 1.47022 * 125.64897 * 0.02562 * 8 6 5 10 10 C 1.54327 * 107.27058 * 181.04116 * 9 8 6 11 11 H 1.08998 * 110.72076 * 263.82434 * 10 9 8 12 12 N 1.46503 * 110.72085 * 140.73327 * 10 9 8 13 13 C 1.36936 * 120.00397 * 86.45152 * 12 10 9 14 14 H 1.08001 * 119.99567 * 359.97438 * 13 12 10 15 15 C 1.38806 * 120.00243 * 180.02562 * 13 12 10 16 16 N 1.31626 * 120.00195 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47305 * 89.99617 * 17 15 13 19 19 H 1.48498 * 109.47365 * 209.99834 * 17 15 13 20 20 H 1.48500 * 109.47302 * 329.99537 * 17 15 13 21 21 C 1.55148 * 102.94463 * 22.19156 * 10 9 8 22 22 C 1.47423 * 125.64766 * 179.97438 * 8 6 5 23 23 H 1.09004 * 110.36855 * 274.83671 * 22 8 6 24 24 C 1.52997 * 110.36853 * 37.05124 * 22 8 6 25 25 C 1.37682 * 109.87340 * 359.55806 * 4 3 2 26 26 C 1.39128 * 133.50727 * 180.26158 * 25 4 3 27 27 C 1.37753 * 119.77723 * 179.97438 * 26 25 4 28 28 C 1.38828 * 120.66898 * 0.02633 * 27 26 25 29 29 C 1.36625 * 120.52700 * 359.97438 * 28 27 26 30 30 C 1.39634 * 119.76438 * 359.97438 * 29 28 27 31 31 H 1.09005 * 109.46693 * 270.28947 * 1 2 3 32 32 H 1.09000 * 109.47443 * 30.28525 * 1 2 3 33 33 H 1.08995 * 109.47669 * 150.29240 * 1 2 3 34 34 H 1.07997 * 125.03714 * 0.03324 * 3 2 1 35 35 H 1.09000 * 109.46851 * 144.70455 * 5 4 3 36 36 H 1.08994 * 109.46977 * 24.70203 * 5 4 3 37 37 H 1.09006 * 109.88342 * 300.45124 * 9 8 6 38 38 H 1.08995 * 109.88836 * 61.46751 * 9 8 6 39 39 H 0.97002 * 119.99615 * 266.45095 * 12 10 9 40 40 H 0.96989 * 120.00369 * 180.02562 * 16 15 13 41 41 H 1.08997 * 111.00650 * 206.43006 * 21 10 9 42 42 H 1.08998 * 111.00766 * 82.57184 * 21 10 9 43 43 H 1.09002 * 109.47153 * 58.54555 * 24 22 8 44 44 H 1.09001 * 109.46832 * 298.54746 * 24 22 8 45 45 H 1.09004 * 109.47261 * 178.54727 * 24 22 8 46 46 H 1.07998 * 120.11388 * 359.97413 * 26 25 4 47 47 H 1.08000 * 119.66548 * 179.97438 * 27 26 25 48 48 H 1.07997 * 119.73986 * 179.97438 * 28 27 26 49 49 H 1.08006 * 120.12198 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6169 0.6888 -0.0043 5 6 4.7656 1.5982 -0.0094 6 6 5.2358 1.8055 -1.4261 7 8 4.6677 1.2482 -2.3414 8 7 6.2882 2.6095 -1.6760 9 6 7.0659 3.3418 -0.6658 10 6 8.1487 4.1462 -1.4156 11 1 9.0931 3.6022 -1.4292 12 7 8.3235 5.4691 -0.8109 13 6 9.1809 5.6317 0.2444 14 1 9.7280 4.7846 0.6311 15 6 9.3461 6.8850 0.8177 16 7 8.6790 7.9173 0.3467 17 14 10.5163 7.1070 2.2567 18 1 11.8716 7.4358 1.7465 19 1 10.0319 8.2118 3.1227 20 1 10.5756 5.8499 3.0449 21 6 7.5635 4.2659 -2.8475 22 6 6.8510 2.8994 -3.0074 23 1 7.5660 2.1279 -3.2932 24 6 5.7335 3.0000 -4.0475 25 6 3.6963 -0.6857 0.0028 26 6 4.7589 -1.5838 0.0070 27 6 4.5096 -2.9385 0.0146 28 6 3.2070 -3.4188 0.0175 29 6 2.1487 -2.5548 0.0134 30 6 2.3784 -1.1775 0.0068 31 1 -0.3633 0.0052 1.0277 32 1 -0.3634 0.8874 -0.5182 33 1 -0.3634 -0.8925 -0.5092 34 1 1.9635 2.1035 0.0005 35 1 5.5732 1.1667 0.5819 36 1 4.4725 2.5561 0.4200 37 1 6.4137 4.0208 -0.1164 38 1 7.5338 2.6388 0.0233 39 1 7.8318 6.2298 -1.1580 40 1 8.7947 8.7932 0.7470 41 1 8.3572 4.3812 -3.5856 42 1 6.8508 5.0882 -2.9108 43 1 5.0348 3.7840 -3.7554 44 1 5.2065 2.0477 -4.1078 45 1 6.1630 3.2398 -5.0202 46 1 5.7757 -1.2200 0.0044 47 1 5.3358 -3.6341 0.0175 48 1 3.0288 -4.4840 0.0231 49 1 1.1380 -2.9356 0.0153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989540378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:26 Heat of formation + Delta-G solvation = 45.337131 kcal Electronic energy + Delta-G solvation = -29500.682626 eV Core-core repulsion = 25621.569342 eV Total energy + Delta-G solvation = -3879.113284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.50153 -39.96905 -37.61707 -36.87814 -34.29667 -33.85792 -32.03248 -31.48600 -30.32377 -29.81500 -28.60829 -28.28902 -25.60068 -25.32133 -23.97262 -22.81822 -22.07788 -21.23914 -20.40586 -19.58802 -18.95371 -17.46778 -17.04401 -16.71774 -16.66566 -16.15318 -15.48755 -15.27931 -14.85610 -14.49613 -14.17364 -13.98262 -13.79104 -13.75229 -13.33060 -13.31288 -13.16648 -12.89186 -12.83226 -12.73691 -12.38479 -12.16854 -12.11580 -11.96247 -11.83898 -11.54895 -11.43038 -11.32879 -11.11036 -10.89279 -10.82540 -10.77196 -10.42183 -10.14361 -9.85608 -9.67981 -9.43537 -9.10548 -8.47636 -8.16986 -7.56241 -7.21009 -5.94869 -3.26720 1.11706 1.61312 2.44775 2.59166 2.72204 3.20223 3.32610 3.38416 3.39942 3.91315 4.38354 4.48710 4.56489 4.62462 4.72133 4.91716 4.95691 4.98650 5.04671 5.08768 5.13743 5.23947 5.29588 5.38266 5.47344 5.49929 5.55111 5.62517 5.68245 5.72504 5.73767 5.77633 5.84479 5.92219 5.97622 6.01856 6.08871 6.14180 6.30428 6.34527 6.38726 6.46464 6.58152 6.58784 6.73040 6.74105 6.80101 7.19513 7.23355 7.53100 7.64133 8.18705 8.22721 9.34461 9.87245 10.21962 11.26881 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.002561 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.195983 B =10928.823179 C =11417.097507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.178 4.178 3 C 0.062 3.938 4 N -0.465 5.465 5 C 0.095 3.905 6 C 0.508 3.492 7 O -0.529 6.529 8 N -0.606 5.606 9 C 0.068 3.932 10 C 0.173 3.827 11 H 0.066 0.934 12 N -0.713 5.713 13 C -0.252 4.252 14 H 0.073 0.927 15 C -0.007 4.007 16 N -0.928 5.928 17 Si 0.908 3.092 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C -0.136 4.136 22 C 0.138 3.862 23 H 0.073 0.927 24 C -0.163 4.163 25 C 0.112 3.888 26 C -0.124 4.124 27 C -0.103 4.103 28 C -0.151 4.151 29 C -0.072 4.072 30 C -0.102 4.102 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.165 0.835 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.651 -16.925 -2.025 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.185 4.185 3 C -0.062 4.062 4 N -0.147 5.147 5 C -0.031 4.031 6 C 0.294 3.706 7 O -0.406 6.406 8 N -0.341 5.341 9 C -0.058 4.058 10 C 0.061 3.939 11 H 0.084 0.916 12 N -0.353 5.353 13 C -0.383 4.383 14 H 0.091 0.909 15 C -0.204 4.204 16 N -0.575 5.575 17 Si 0.739 3.261 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.175 4.175 22 C 0.035 3.965 23 H 0.091 0.909 24 C -0.220 4.220 25 C 0.007 3.993 26 C -0.144 4.144 27 C -0.122 4.122 28 C -0.170 4.170 29 C -0.091 4.091 30 C -0.107 4.107 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.182 0.818 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.222 0.778 40 H 0.068 0.932 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.133 0.867 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.626 -16.983 -2.338 20.714 hybrid contribution 0.742 0.704 0.794 1.295 sum -10.883 -16.279 -1.544 19.643 Atomic orbital electron populations 1.20049 0.89545 1.02054 1.01366 1.20198 0.95078 0.90728 1.12493 1.21559 0.81549 0.99228 1.03913 1.43333 1.05042 1.03719 1.62567 1.21591 0.89523 0.95999 0.95997 1.20458 0.79871 0.79151 0.91118 1.90685 1.55965 1.48407 1.45555 1.48648 1.30245 1.45695 1.09548 1.23426 0.95406 0.95286 0.91674 1.21141 0.94603 0.88434 0.89705 0.91597 1.42383 1.51484 1.03581 1.37843 1.19233 1.17618 0.94181 1.07255 0.90920 1.24782 1.00069 0.95685 0.99838 1.69655 1.44611 0.99728 1.43552 0.86185 0.80539 0.77416 0.81977 1.21527 1.21669 1.20610 1.23148 1.00055 0.95636 0.98626 1.21883 0.94988 0.96886 0.82727 0.90903 1.22156 0.98352 1.03930 0.97599 1.18172 0.95472 0.82585 1.03116 1.20017 0.96553 0.92309 1.05555 1.20747 0.96935 0.94021 1.00516 1.20562 0.92482 0.99253 1.04723 1.20195 0.98853 0.90865 0.99186 1.19053 0.91816 0.93177 1.06612 0.92108 0.92026 0.92017 0.81762 0.86865 0.86183 0.90715 0.92149 0.77823 0.93240 0.90034 0.90441 0.92839 0.89915 0.92257 0.86730 0.86017 0.86326 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.41 36.01 0.37 -0.29 16 2 C -0.18 -2.22 6.32 -102.71 -0.65 -2.87 16 3 C 0.06 0.77 11.19 -16.73 -0.19 0.59 16 4 N -0.46 -6.26 2.27 -115.71 -0.26 -6.52 16 5 C 0.09 1.15 5.67 -5.19 -0.03 1.12 16 6 C 0.51 7.55 7.70 -10.98 -0.08 7.46 16 7 O -0.53 -9.45 14.08 5.56 0.08 -9.37 16 8 N -0.61 -8.80 3.24 -163.03 -0.53 -9.32 16 9 C 0.07 1.04 6.24 -3.06 -0.02 1.02 16 10 C 0.17 3.00 3.58 -66.10 -0.24 2.77 16 11 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 12 N -0.71 -15.99 5.18 -51.65 -0.27 -16.25 16 13 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 14 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 16 N -0.93 -26.33 13.06 55.49 0.72 -25.61 16 17 Si 0.91 21.01 29.55 -169.99 -5.02 15.99 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.14 -2.01 6.12 -24.57 -0.15 -2.16 16 22 C 0.14 1.94 3.77 -66.40 -0.25 1.69 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 C -0.16 -2.25 8.71 37.16 0.32 -1.92 16 25 C 0.11 1.60 6.80 -83.99 -0.57 1.03 16 26 C -0.12 -1.61 10.00 -39.43 -0.39 -2.01 16 27 C -0.10 -1.17 10.01 -39.54 -0.40 -1.56 16 28 C -0.15 -1.64 9.97 -39.95 -0.40 -2.04 16 29 C -0.07 -0.85 10.05 -39.64 -0.40 -1.25 16 30 C -0.10 -1.40 6.35 -105.14 -0.67 -2.07 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.12 1.25 8.11 -51.93 -0.42 0.83 16 37 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.39 9.38 7.73 -40.82 -0.32 9.06 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.30 5.89 -51.93 -0.31 0.99 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 47 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 48 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 49 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 402.59 15.07 6.07 6.07 Total: -1.00 -31.20 402.59 -10.95 -42.15 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -7.76 Total: 10.16 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -3.98 Total: -7.28 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.33 Total: -57.71 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.20 -10.95 -42.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989540378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.483 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds