Wall clock time and date at job start Wed Apr 1 2020 00:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34238 * 126.49969 * 2 1 4 4 N 1.36830 * 109.92791 * 180.19095 * 3 2 1 5 5 C 1.46507 * 125.06120 * 179.81545 * 4 3 2 6 6 C 1.50702 * 109.46847 * 264.70217 * 5 4 3 7 7 O 1.21283 * 120.00407 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99579 * 180.02562 * 6 5 4 9 9 C 1.47022 * 125.64897 * 0.02562 * 8 6 5 10 10 C 1.54327 * 107.27058 * 181.04116 * 9 8 6 11 11 H 1.08998 * 110.72076 * 263.82434 * 10 9 8 12 12 N 1.46503 * 110.72085 * 140.73327 * 10 9 8 13 13 C 1.36936 * 120.00397 * 86.45152 * 12 10 9 14 14 H 1.08001 * 119.99567 * 359.97438 * 13 12 10 15 15 C 1.38806 * 120.00243 * 180.02562 * 13 12 10 16 16 N 1.31626 * 120.00195 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47305 * 89.99617 * 17 15 13 19 19 H 1.48498 * 109.47365 * 209.99834 * 17 15 13 20 20 H 1.48500 * 109.47302 * 329.99537 * 17 15 13 21 21 C 1.55148 * 102.94463 * 22.19156 * 10 9 8 22 22 C 1.47423 * 125.64766 * 179.97438 * 8 6 5 23 23 H 1.09004 * 110.36855 * 274.83671 * 22 8 6 24 24 C 1.52997 * 110.36853 * 37.05124 * 22 8 6 25 25 C 1.37682 * 109.87340 * 359.55806 * 4 3 2 26 26 C 1.39128 * 133.50727 * 180.26158 * 25 4 3 27 27 C 1.37753 * 119.77723 * 179.97438 * 26 25 4 28 28 C 1.38828 * 120.66898 * 0.02633 * 27 26 25 29 29 C 1.36625 * 120.52700 * 359.97438 * 28 27 26 30 30 C 1.39634 * 119.76438 * 359.97438 * 29 28 27 31 31 H 1.09005 * 109.46693 * 270.28947 * 1 2 3 32 32 H 1.09000 * 109.47443 * 30.28525 * 1 2 3 33 33 H 1.08995 * 109.47669 * 150.29240 * 1 2 3 34 34 H 1.07997 * 125.03714 * 0.03324 * 3 2 1 35 35 H 1.09000 * 109.46851 * 144.70455 * 5 4 3 36 36 H 1.08994 * 109.46977 * 24.70203 * 5 4 3 37 37 H 1.09006 * 109.88342 * 300.45124 * 9 8 6 38 38 H 1.08995 * 109.88836 * 61.46751 * 9 8 6 39 39 H 0.97002 * 119.99615 * 266.45095 * 12 10 9 40 40 H 0.96989 * 120.00369 * 180.02562 * 16 15 13 41 41 H 1.08997 * 111.00650 * 206.43006 * 21 10 9 42 42 H 1.08998 * 111.00766 * 82.57184 * 21 10 9 43 43 H 1.09002 * 109.47153 * 58.54555 * 24 22 8 44 44 H 1.09001 * 109.46832 * 298.54746 * 24 22 8 45 45 H 1.09004 * 109.47261 * 178.54727 * 24 22 8 46 46 H 1.07998 * 120.11388 * 359.97413 * 26 25 4 47 47 H 1.08000 * 119.66548 * 179.97438 * 27 26 25 48 48 H 1.07997 * 119.73986 * 179.97438 * 28 27 26 49 49 H 1.08006 * 120.12198 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6169 0.6888 -0.0043 5 6 4.7656 1.5982 -0.0094 6 6 5.2358 1.8055 -1.4261 7 8 4.6677 1.2482 -2.3414 8 7 6.2882 2.6095 -1.6760 9 6 7.0659 3.3418 -0.6658 10 6 8.1487 4.1462 -1.4156 11 1 9.0931 3.6022 -1.4292 12 7 8.3235 5.4691 -0.8109 13 6 9.1809 5.6317 0.2444 14 1 9.7280 4.7846 0.6311 15 6 9.3461 6.8850 0.8177 16 7 8.6790 7.9173 0.3467 17 14 10.5163 7.1070 2.2567 18 1 11.8716 7.4358 1.7465 19 1 10.0319 8.2118 3.1227 20 1 10.5756 5.8499 3.0449 21 6 7.5635 4.2659 -2.8475 22 6 6.8510 2.8994 -3.0074 23 1 7.5660 2.1279 -3.2932 24 6 5.7335 3.0000 -4.0475 25 6 3.6963 -0.6857 0.0028 26 6 4.7589 -1.5838 0.0070 27 6 4.5096 -2.9385 0.0146 28 6 3.2070 -3.4188 0.0175 29 6 2.1487 -2.5548 0.0134 30 6 2.3784 -1.1775 0.0068 31 1 -0.3633 0.0052 1.0277 32 1 -0.3634 0.8874 -0.5182 33 1 -0.3634 -0.8925 -0.5092 34 1 1.9635 2.1035 0.0005 35 1 5.5732 1.1667 0.5819 36 1 4.4725 2.5561 0.4200 37 1 6.4137 4.0208 -0.1164 38 1 7.5338 2.6388 0.0233 39 1 7.8318 6.2298 -1.1580 40 1 8.7947 8.7932 0.7470 41 1 8.3572 4.3812 -3.5856 42 1 6.8508 5.0882 -2.9108 43 1 5.0348 3.7840 -3.7554 44 1 5.2065 2.0477 -4.1078 45 1 6.1630 3.2398 -5.0202 46 1 5.7757 -1.2200 0.0044 47 1 5.3358 -3.6341 0.0175 48 1 3.0288 -4.4840 0.0231 49 1 1.1380 -2.9356 0.0153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989540378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:25 Heat of formation + Delta-G solvation = 29.860959 kcal Electronic energy + Delta-G solvation = -29501.353723 eV Core-core repulsion = 25621.569342 eV Total energy + Delta-G solvation = -3879.784382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.43450 -41.15850 -38.85165 -37.82975 -35.97946 -34.79553 -33.35191 -33.02691 -31.24953 -30.67682 -30.11340 -29.26476 -26.74036 -26.37176 -25.72639 -23.78106 -23.16358 -22.25814 -21.77651 -20.49683 -20.12127 -19.21181 -18.25516 -17.78775 -17.62995 -17.27554 -16.70504 -16.32278 -16.25303 -15.67601 -15.43163 -15.32180 -14.97997 -14.85667 -14.58899 -14.44644 -14.27611 -14.00200 -13.77485 -13.60123 -13.50466 -13.33069 -13.19748 -13.00654 -12.96157 -12.91438 -12.81484 -12.46153 -12.40289 -12.23595 -12.15795 -12.09309 -11.72787 -11.68925 -11.57161 -11.03857 -10.76270 -10.38739 -9.70336 -9.10487 -9.07157 -8.46481 -7.94944 -5.25035 0.21401 0.69884 1.43207 1.47093 1.50834 1.51781 1.59298 1.81153 2.10853 2.56655 2.99853 3.28793 3.36718 3.65048 3.71787 3.78712 3.83272 3.85432 3.88618 4.04066 4.10641 4.15432 4.27460 4.28806 4.43802 4.46017 4.47399 4.49754 4.65593 4.69521 4.74460 4.83557 4.85873 4.87784 4.95743 5.01610 5.07347 5.12615 5.17823 5.20054 5.30243 5.31120 5.47274 5.55175 5.59440 5.70868 5.87457 5.90779 6.25745 6.29448 6.31279 6.45843 7.02040 7.33939 8.05241 8.28563 9.27909 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.002561 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.195983 B =10928.823179 C =11417.097507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.188 4.188 3 C 0.043 3.957 4 N -0.472 5.472 5 C 0.097 3.903 6 C 0.508 3.492 7 O -0.560 6.560 8 N -0.605 5.605 9 C 0.082 3.918 10 C 0.166 3.834 11 H 0.071 0.929 12 N -0.725 5.725 13 C -0.240 4.240 14 H 0.083 0.917 15 C -0.070 4.070 16 N -0.968 5.968 17 Si 0.967 3.033 18 H -0.290 1.290 19 H -0.300 1.300 20 H -0.266 1.266 21 C -0.124 4.124 22 C 0.138 3.862 23 H 0.085 0.915 24 C -0.153 4.153 25 C 0.085 3.915 26 C -0.146 4.146 27 C -0.104 4.104 28 C -0.153 4.153 29 C -0.081 4.081 30 C -0.130 4.130 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.184 0.816 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.376 0.624 40 H 0.250 0.750 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.117 0.883 47 H 0.146 0.854 48 H 0.148 0.852 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 -18.831 -1.731 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.195 4.195 3 C -0.081 4.081 4 N -0.154 5.154 5 C -0.028 4.028 6 C 0.296 3.704 7 O -0.439 6.439 8 N -0.339 5.339 9 C -0.044 4.044 10 C 0.056 3.944 11 H 0.089 0.911 12 N -0.364 5.364 13 C -0.372 4.372 14 H 0.101 0.899 15 C -0.263 4.263 16 N -0.618 5.618 17 Si 0.797 3.203 18 H -0.218 1.218 19 H -0.227 1.227 20 H -0.191 1.191 21 C -0.163 4.163 22 C 0.035 3.965 23 H 0.103 0.897 24 C -0.211 4.211 25 C -0.021 4.021 26 C -0.166 4.166 27 C -0.123 4.123 28 C -0.172 4.172 29 C -0.100 4.100 30 C -0.134 4.134 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.201 0.799 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.135 0.865 47 H 0.164 0.836 48 H 0.165 0.835 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.615 -18.951 -2.049 22.321 hybrid contribution 0.715 1.158 0.619 1.495 sum -10.900 -17.792 -1.430 20.915 Atomic orbital electron populations 1.20101 0.87561 1.02753 1.02296 1.20650 0.96559 0.90400 1.11846 1.22005 0.81447 1.00333 1.04297 1.43450 1.05487 1.03675 1.62838 1.21670 0.89926 0.96872 0.94337 1.20888 0.79250 0.78344 0.91903 1.90676 1.56826 1.49604 1.46824 1.48648 1.30222 1.45487 1.09535 1.23075 0.94589 0.95221 0.91474 1.21333 0.95545 0.86471 0.91060 0.91121 1.42515 1.51063 1.05176 1.37609 1.19625 1.16577 0.94089 1.06892 0.89948 1.25499 1.02245 0.95839 1.02667 1.69800 1.46860 0.99859 1.45253 0.85234 0.78401 0.77339 0.79337 1.21759 1.22746 1.19100 1.23048 1.00124 0.95738 0.97384 1.21951 0.95212 0.96622 0.82697 0.89737 1.22044 0.97921 1.02478 0.98618 1.18546 0.96279 0.83191 1.04035 1.20252 0.96573 0.93117 1.06693 1.21130 0.98145 0.93825 0.99228 1.20950 0.92030 1.00685 1.03530 1.20542 1.00292 0.90384 0.98737 1.19484 0.92092 0.94395 1.07461 0.90974 0.91097 0.91522 0.79908 0.85432 0.84513 0.91788 0.90591 0.79191 0.94070 0.88584 0.91419 0.93872 0.91723 0.90153 0.86465 0.83613 0.83466 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.41 71.24 0.74 -0.46 16 2 C -0.19 -4.58 6.32 -18.63 -0.12 -4.69 16 3 C 0.04 1.06 11.19 83.00 0.93 1.99 16 4 N -0.47 -12.58 2.27 -519.99 -1.18 -13.76 16 5 C 0.10 2.30 5.67 85.63 0.49 2.78 16 6 C 0.51 14.76 7.70 87.66 0.67 15.44 16 7 O -0.56 -19.95 14.08 -3.04 -0.04 -20.00 16 8 N -0.60 -16.80 3.24 -788.08 -2.56 -19.36 16 9 C 0.08 2.38 6.24 86.73 0.54 2.92 16 10 C 0.17 5.52 3.58 46.18 0.17 5.69 16 11 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16 12 N -0.72 -32.12 5.18 -317.34 -1.64 -33.77 16 13 C -0.24 -11.93 9.98 84.03 0.84 -11.09 16 14 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 15 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 16 N -0.97 -55.72 13.06 21.65 0.28 -55.43 16 17 Si 0.97 43.12 29.55 68.60 2.03 45.14 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 21 C -0.12 -3.50 6.12 31.99 0.20 -3.31 16 22 C 0.14 3.67 3.77 45.48 0.17 3.84 16 23 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 24 C -0.15 -4.07 8.71 71.98 0.63 -3.44 16 25 C 0.09 2.42 6.80 39.03 0.27 2.68 16 26 C -0.15 -3.73 10.00 22.37 0.22 -3.50 16 27 C -0.10 -2.21 10.01 22.30 0.22 -1.98 16 28 C -0.15 -3.03 9.97 22.03 0.22 -2.81 16 29 C -0.08 -1.81 10.05 22.23 0.22 -1.59 16 30 C -0.13 -3.50 6.35 -20.20 -0.13 -3.63 16 31 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.18 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.14 2.71 8.11 -2.39 -0.02 2.69 16 37 H 0.06 2.04 8.03 -2.38 -0.02 2.02 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.38 18.33 7.73 -92.71 -0.72 17.61 16 40 H 0.25 14.16 8.31 -92.72 -0.77 13.39 16 41 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.07 2.07 7.93 -2.39 -0.02 2.05 16 43 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.06 2.00 5.89 -2.39 -0.01 1.99 16 45 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 47 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 48 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 49 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -67.35 402.59 3.86 -63.48 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: 0.23 Total: 38.10 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 6.75 Total: -4.41 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -5.10 Total: -122.32 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.04 Total: -20.00 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.35 3.86 -63.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989540378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.343 kcal (2) G-P(sol) polarization free energy of solvation -67.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds