Wall clock time and date at job start Wed Apr 1 2020 00:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36859 * 125.01870 * 2 1 4 4 H 0.97002 * 125.00912 * 0.03537 * 3 2 1 5 5 C 1.37398 * 109.98245 * 180.02562 * 3 2 1 6 6 C 1.39369 * 133.25332 * 179.97438 * 5 3 2 7 7 C 1.36310 * 120.23877 * 179.97438 * 6 5 3 8 8 C 1.40213 * 120.67174 * 0.02562 * 7 6 5 9 9 C 1.47647 * 119.97416 * 179.97438 * 8 7 6 10 10 O 1.21586 * 120.00106 * 307.10773 * 9 8 7 11 11 N 1.34776 * 120.00087 * 127.11676 * 9 8 7 12 12 C 1.48211 * 119.97153 * 358.51915 * 11 9 8 13 13 C 1.47137 * 110.34580 * 102.51250 * 12 11 9 14 14 C 1.53239 * 111.81644 * 58.22111 * 13 12 11 15 15 N 1.43462 * 108.26696 * 281.68138 * 14 13 12 16 16 C 1.36932 * 118.94433 * 273.78041 * 15 14 13 17 17 H 1.08001 * 119.99609 * 30.15314 * 16 15 14 18 18 C 1.38808 * 120.00243 * 210.16165 * 16 15 14 19 19 N 1.31620 * 119.99860 * 26.25883 * 18 16 15 20 20 Si 1.86798 * 120.00003 * 206.25679 * 18 16 15 21 21 H 1.48505 * 109.46877 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47347 * 59.99958 * 20 18 16 23 23 H 1.48502 * 109.47031 * 299.99582 * 20 18 16 24 24 C 1.48862 * 122.11521 * 93.50080 * 15 14 13 25 25 C 1.43625 * 119.97136 * 178.54203 * 11 9 8 26 26 C 1.39151 * 120.04807 * 0.24514 * 8 7 6 27 27 C 1.39270 * 119.39504 * 359.46315 * 26 8 7 28 28 C 1.34186 * 125.01866 * 180.02562 * 2 1 3 29 29 C 1.50696 * 126.55011 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47010 * 89.98321 * 1 2 3 31 31 H 1.09004 * 109.46644 * 209.97580 * 1 2 3 32 32 H 1.08997 * 109.47487 * 329.97942 * 1 2 3 33 33 H 1.08000 * 119.87797 * 0.02562 * 6 5 3 34 34 H 1.08003 * 119.66706 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.32153 * 222.77378 * 12 11 9 36 36 H 1.08998 * 109.32556 * 342.41543 * 12 11 9 37 37 H 1.08994 * 109.00689 * 178.90626 * 13 12 11 38 38 H 1.09003 * 109.00128 * 297.76539 * 13 12 11 39 39 H 1.08997 * 109.49005 * 162.04091 * 14 13 12 40 40 H 1.09005 * 109.73505 * 41.46574 * 14 13 12 41 41 H 0.96997 * 120.00003 * 5.98941 * 19 18 16 42 42 H 1.08993 * 109.48181 * 80.88394 * 24 15 14 43 43 H 1.09008 * 109.47582 * 200.91319 * 24 15 14 44 44 H 1.08998 * 108.87778 * 149.86411 * 25 11 9 45 45 H 1.09002 * 108.87535 * 31.42526 * 25 11 9 46 46 H 1.07992 * 120.30020 * 179.72366 * 26 8 7 47 47 H 1.09005 * 109.46977 * 89.97310 * 29 28 2 48 48 H 1.08993 * 109.47581 * 209.97605 * 29 28 2 49 49 H 1.09003 * 109.46621 * 329.97894 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1208 0.0000 4 1 1.9611 2.0325 0.0005 5 6 3.6193 0.7644 -0.0006 6 6 4.8050 1.4969 -0.0013 7 6 6.0080 0.8559 -0.0012 8 6 6.0721 -0.5447 -0.0010 9 6 7.3835 -1.2231 -0.0015 10 8 8.2149 -0.9384 -0.8417 11 7 7.6588 -2.1582 0.9292 12 6 6.6574 -2.4815 1.9729 13 6 5.9734 -3.7441 1.6518 14 6 6.9602 -4.9092 1.5214 15 7 7.5923 -4.8213 0.2366 16 6 6.9784 -5.3948 -0.8447 17 1 5.9011 -5.4624 -0.8809 18 6 7.7405 -5.8893 -1.8942 19 7 8.9757 -6.2896 -1.6789 20 14 7.0130 -5.9868 -3.6119 21 1 8.0225 -6.5470 -4.5459 22 1 6.6224 -4.6266 -4.0620 23 1 5.8156 -6.8649 -3.5933 24 6 8.8914 -4.1214 0.0400 25 6 8.9227 -2.8401 0.9092 26 6 4.9007 -1.2958 -0.0060 27 6 3.6703 -0.6434 0.0002 28 6 2.2771 -1.0989 -0.0005 29 6 1.8006 -2.5286 -0.0017 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3634 0.8898 0.5141 33 1 4.7704 2.5764 -0.0010 34 1 6.9210 1.4328 -0.0022 35 1 7.1584 -2.5776 2.9361 36 1 5.9215 -1.6793 2.0275 37 1 5.2571 -3.9705 2.4416 38 1 5.4377 -3.6279 0.7097 39 1 6.4213 -5.8531 1.6032 40 1 7.7124 -4.8442 2.3076 41 1 9.3247 -6.3210 -0.7745 42 1 9.7077 -4.7807 0.3347 43 1 9.0033 -3.8511 -1.0101 44 1 9.1926 -3.1127 1.9295 45 1 9.6816 -2.1646 0.5144 46 1 4.9453 -2.3748 -0.0103 47 1 1.6857 -2.8724 -1.0297 48 1 2.5300 -3.1551 0.5116 49 1 0.8414 -2.5922 0.5121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989637129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:45 Heat of formation + Delta-G solvation = 50.747800 kcal Electronic energy + Delta-G solvation = -31122.633602 eV Core-core repulsion = 27243.754942 eV Total energy + Delta-G solvation = -3878.878660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.47276 -39.83610 -37.25277 -36.53508 -34.48500 -33.33439 -32.40415 -31.25284 -31.05341 -29.96099 -28.25587 -27.30532 -25.94797 -25.24758 -23.97980 -22.92373 -22.12585 -21.17829 -19.74329 -19.37629 -18.57963 -17.72811 -17.29831 -16.87041 -16.02676 -15.73807 -15.17009 -15.05427 -14.49385 -14.17002 -14.08236 -13.91218 -13.58846 -13.36676 -13.21102 -13.15617 -13.05115 -12.85764 -12.71843 -12.64251 -12.52199 -12.27286 -12.17758 -11.94394 -11.70126 -11.32947 -11.06944 -10.97214 -10.82136 -10.60550 -10.32752 -10.17849 -10.11932 -9.91248 -9.53021 -9.38644 -9.23951 -8.23652 -8.14202 -8.02196 -7.59268 -6.77420 -5.96887 -3.18447 1.11157 1.40249 2.56427 2.95736 3.18940 3.53982 3.56175 3.63337 3.77805 3.94756 4.49858 4.68483 4.69651 4.83357 4.92452 4.98147 5.12980 5.19377 5.20398 5.31296 5.35639 5.43699 5.52834 5.57866 5.63014 5.67318 5.76554 5.79115 5.79854 5.84046 5.87986 6.03014 6.10944 6.13604 6.20222 6.31685 6.37208 6.38544 6.42320 6.57883 6.65333 6.77042 6.78181 6.82416 7.00494 7.09923 7.20079 7.29983 7.42476 7.90786 8.14671 8.66658 8.72965 9.25616 9.93014 10.35345 11.28459 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011426 B = 0.004178 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.003560 B = 6700.018698 C = 7603.392554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.063 3.937 3 N -0.592 5.592 4 H 0.412 0.588 5 C 0.112 3.888 6 C -0.141 4.141 7 C -0.053 4.053 8 C -0.146 4.146 9 C 0.565 3.435 10 O -0.541 6.541 11 N -0.579 5.579 12 C 0.120 3.880 13 C -0.177 4.177 14 C 0.165 3.835 15 N -0.592 5.592 16 C -0.356 4.356 17 H 0.050 0.950 18 C -0.014 4.014 19 N -0.910 5.910 20 Si 1.054 2.946 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.142 3.858 25 C 0.098 3.902 26 C -0.032 4.032 27 C -0.110 4.110 28 C -0.156 4.156 29 C -0.081 4.081 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.030 0.970 41 H 0.268 0.732 42 H 0.033 0.967 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.143 0.857 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 14.664 9.290 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 N -0.196 5.196 4 H 0.248 0.752 5 C 0.004 3.996 6 C -0.161 4.161 7 C -0.073 4.073 8 C -0.150 4.150 9 C 0.353 3.647 10 O -0.419 6.419 11 N -0.309 5.309 12 C -0.003 4.003 13 C -0.218 4.218 14 C 0.037 3.963 15 N -0.315 5.315 16 C -0.486 4.486 17 H 0.068 0.932 18 C -0.217 4.217 19 N -0.549 5.549 20 Si 0.884 3.116 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.220 1.220 24 C 0.016 3.984 25 C -0.027 4.027 26 C -0.050 4.050 27 C -0.115 4.115 28 C -0.163 4.163 29 C -0.138 4.138 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.160 0.840 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.477 14.502 7.279 21.746 hybrid contribution -0.604 0.877 1.533 1.867 sum -15.081 15.380 8.812 23.273 Atomic orbital electron populations 1.20435 0.87849 1.03454 1.03000 1.20006 0.93138 0.85442 1.05743 1.41558 1.03991 1.07995 1.66029 0.75153 1.18302 0.84457 0.94123 1.02698 1.19563 0.89344 0.98887 1.08343 1.20447 0.97165 0.92687 0.97034 1.19612 0.93129 0.93941 1.08355 1.18176 0.86519 0.79191 0.80812 1.90759 1.48642 1.65427 1.37107 1.47274 1.17156 1.37328 1.29191 1.20800 0.91380 0.98111 0.89964 1.21998 1.00431 0.97627 1.01714 1.20142 0.93406 0.94820 0.87970 1.43668 1.22711 1.61280 1.03843 1.19793 0.91608 1.37803 0.99362 0.93185 1.25732 0.96773 0.95469 1.03711 1.70792 1.17767 1.41845 1.24525 0.83701 0.75040 0.76194 0.76683 1.21101 1.21988 1.22007 1.22037 0.88081 0.89239 0.99085 1.21754 0.84962 0.95739 1.00268 1.21164 0.89247 1.00794 0.93844 1.18979 0.93023 0.91769 1.07685 1.20090 0.90369 0.94906 1.10950 1.20163 1.00680 0.90901 1.02057 0.90611 0.89701 0.91636 0.86067 0.85314 0.91727 0.90644 0.92345 0.90808 0.93487 0.95144 0.92086 0.94966 0.91352 0.92228 0.90800 0.83953 0.91578 0.91371 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 10.18 36.01 0.37 -0.21 16 2 C 0.06 0.65 7.08 -81.77 -0.58 0.07 16 3 N -0.59 -5.95 6.05 -6.91 -0.04 -5.99 16 4 H 0.41 2.76 8.96 -40.82 -0.37 2.39 16 5 C 0.11 1.46 7.27 -83.95 -0.61 0.85 16 6 C -0.14 -1.75 10.00 -39.85 -0.40 -2.15 16 7 C -0.05 -0.79 9.66 -39.53 -0.38 -1.17 16 8 C -0.15 -2.54 4.64 -104.98 -0.49 -3.03 16 9 C 0.56 11.52 7.15 -12.42 -0.09 11.43 16 10 O -0.54 -12.99 16.60 5.29 0.09 -12.90 16 11 N -0.58 -10.88 2.46 -177.85 -0.44 -11.32 16 12 C 0.12 1.86 5.04 -5.92 -0.03 1.83 16 13 C -0.18 -2.97 5.41 -29.42 -0.16 -3.13 16 14 C 0.16 3.31 5.59 -5.53 -0.03 3.28 16 15 N -0.59 -14.51 2.35 -172.35 -0.40 -14.92 16 16 C -0.36 -9.93 9.07 -15.06 -0.14 -10.06 16 17 H 0.05 1.41 7.95 -52.49 -0.42 0.99 16 18 C -0.01 -0.39 4.61 -17.43 -0.08 -0.47 16 19 N -0.91 -27.72 12.76 55.49 0.71 -27.01 16 20 Si 1.05 26.45 29.99 -169.99 -5.10 21.35 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.14 3.39 5.12 -1.75 -0.01 3.38 16 25 C 0.10 1.92 5.26 -4.58 -0.02 1.89 16 26 C -0.03 -0.53 7.76 -38.86 -0.30 -0.84 16 27 C -0.11 -1.64 6.34 -105.15 -0.67 -2.31 16 28 C -0.16 -1.99 6.32 -102.69 -0.65 -2.64 16 29 C -0.08 -0.90 10.17 36.00 0.37 -0.53 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.48 7.04 -51.93 -0.37 0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 36 H 0.08 1.09 5.62 -51.93 -0.29 0.80 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.41 4.99 -51.93 -0.26 1.15 16 39 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16 40 H 0.03 0.57 7.58 -51.93 -0.39 0.17 16 41 H 0.27 8.14 6.55 -40.82 -0.27 7.88 16 42 H 0.03 0.79 7.15 -51.93 -0.37 0.42 16 43 H 0.07 1.93 7.20 -51.92 -0.37 1.55 16 44 H 0.06 1.01 7.73 -51.93 -0.40 0.61 16 45 H 0.07 1.47 7.35 -51.93 -0.38 1.09 16 46 H 0.14 2.58 4.67 -52.49 -0.25 2.34 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.53 7.06 -51.93 -0.37 0.16 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -35.01 380.95 -10.44 -45.44 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.09 Total: 3.40 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -3.90 Total: -3.79 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.18 Total: -59.25 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -5.10 Total: 21.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.01 -10.44 -45.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989637129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.193 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds