Wall clock time and date at job start Wed Apr 1 2020 00:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36859 * 125.01870 * 2 1 4 4 H 0.97002 * 125.00912 * 0.03537 * 3 2 1 5 5 C 1.37398 * 109.98245 * 180.02562 * 3 2 1 6 6 C 1.39369 * 133.25332 * 179.97438 * 5 3 2 7 7 C 1.36310 * 120.23877 * 179.97438 * 6 5 3 8 8 C 1.40213 * 120.67174 * 0.02562 * 7 6 5 9 9 C 1.47647 * 119.97416 * 179.97438 * 8 7 6 10 10 O 1.21586 * 120.00106 * 307.10773 * 9 8 7 11 11 N 1.34776 * 120.00087 * 127.11676 * 9 8 7 12 12 C 1.48211 * 119.97153 * 358.51915 * 11 9 8 13 13 C 1.47137 * 110.34580 * 102.51250 * 12 11 9 14 14 C 1.53239 * 111.81644 * 58.22111 * 13 12 11 15 15 N 1.43462 * 108.26696 * 281.68138 * 14 13 12 16 16 C 1.36932 * 118.94433 * 273.78041 * 15 14 13 17 17 H 1.08001 * 119.99609 * 30.15314 * 16 15 14 18 18 C 1.38808 * 120.00243 * 210.16165 * 16 15 14 19 19 N 1.31620 * 119.99860 * 26.25883 * 18 16 15 20 20 Si 1.86798 * 120.00003 * 206.25679 * 18 16 15 21 21 H 1.48505 * 109.46877 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47347 * 59.99958 * 20 18 16 23 23 H 1.48502 * 109.47031 * 299.99582 * 20 18 16 24 24 C 1.48862 * 122.11521 * 93.50080 * 15 14 13 25 25 C 1.43625 * 119.97136 * 178.54203 * 11 9 8 26 26 C 1.39151 * 120.04807 * 0.24514 * 8 7 6 27 27 C 1.39270 * 119.39504 * 359.46315 * 26 8 7 28 28 C 1.34186 * 125.01866 * 180.02562 * 2 1 3 29 29 C 1.50696 * 126.55011 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47010 * 89.98321 * 1 2 3 31 31 H 1.09004 * 109.46644 * 209.97580 * 1 2 3 32 32 H 1.08997 * 109.47487 * 329.97942 * 1 2 3 33 33 H 1.08000 * 119.87797 * 0.02562 * 6 5 3 34 34 H 1.08003 * 119.66706 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.32153 * 222.77378 * 12 11 9 36 36 H 1.08998 * 109.32556 * 342.41543 * 12 11 9 37 37 H 1.08994 * 109.00689 * 178.90626 * 13 12 11 38 38 H 1.09003 * 109.00128 * 297.76539 * 13 12 11 39 39 H 1.08997 * 109.49005 * 162.04091 * 14 13 12 40 40 H 1.09005 * 109.73505 * 41.46574 * 14 13 12 41 41 H 0.96997 * 120.00003 * 5.98941 * 19 18 16 42 42 H 1.08993 * 109.48181 * 80.88394 * 24 15 14 43 43 H 1.09008 * 109.47582 * 200.91319 * 24 15 14 44 44 H 1.08998 * 108.87778 * 149.86411 * 25 11 9 45 45 H 1.09002 * 108.87535 * 31.42526 * 25 11 9 46 46 H 1.07992 * 120.30020 * 179.72366 * 26 8 7 47 47 H 1.09005 * 109.46977 * 89.97310 * 29 28 2 48 48 H 1.08993 * 109.47581 * 209.97605 * 29 28 2 49 49 H 1.09003 * 109.46621 * 329.97894 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1208 0.0000 4 1 1.9611 2.0325 0.0005 5 6 3.6193 0.7644 -0.0006 6 6 4.8050 1.4969 -0.0013 7 6 6.0080 0.8559 -0.0012 8 6 6.0721 -0.5447 -0.0010 9 6 7.3835 -1.2231 -0.0015 10 8 8.2149 -0.9384 -0.8417 11 7 7.6588 -2.1582 0.9292 12 6 6.6574 -2.4815 1.9729 13 6 5.9734 -3.7441 1.6518 14 6 6.9602 -4.9092 1.5214 15 7 7.5923 -4.8213 0.2366 16 6 6.9784 -5.3948 -0.8447 17 1 5.9011 -5.4624 -0.8809 18 6 7.7405 -5.8893 -1.8942 19 7 8.9757 -6.2896 -1.6789 20 14 7.0130 -5.9868 -3.6119 21 1 8.0225 -6.5470 -4.5459 22 1 6.6224 -4.6266 -4.0620 23 1 5.8156 -6.8649 -3.5933 24 6 8.8914 -4.1214 0.0400 25 6 8.9227 -2.8401 0.9092 26 6 4.9007 -1.2958 -0.0060 27 6 3.6703 -0.6434 0.0002 28 6 2.2771 -1.0989 -0.0005 29 6 1.8006 -2.5286 -0.0017 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3634 0.8898 0.5141 33 1 4.7704 2.5764 -0.0010 34 1 6.9210 1.4328 -0.0022 35 1 7.1584 -2.5776 2.9361 36 1 5.9215 -1.6793 2.0275 37 1 5.2571 -3.9705 2.4416 38 1 5.4377 -3.6279 0.7097 39 1 6.4213 -5.8531 1.6032 40 1 7.7124 -4.8442 2.3076 41 1 9.3247 -6.3210 -0.7745 42 1 9.7077 -4.7807 0.3347 43 1 9.0033 -3.8511 -1.0101 44 1 9.1926 -3.1127 1.9295 45 1 9.6816 -2.1646 0.5144 46 1 4.9453 -2.3748 -0.0103 47 1 1.6857 -2.8724 -1.0297 48 1 2.5300 -3.1551 0.5116 49 1 0.8414 -2.5922 0.5121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989637129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:44 Heat of formation + Delta-G solvation = 29.652398 kcal Electronic energy + Delta-G solvation = -31123.548368 eV Core-core repulsion = 27243.754942 eV Total energy + Delta-G solvation = -3879.793425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.46406 -41.30271 -38.84398 -37.79178 -36.29138 -34.32045 -34.01360 -32.93851 -32.04541 -31.21175 -29.51933 -28.64726 -27.03906 -26.76979 -25.74661 -24.47400 -23.35465 -22.28503 -21.53009 -20.49907 -19.82304 -19.28535 -18.72942 -18.29829 -17.55774 -16.84063 -16.68165 -16.11723 -15.93030 -15.80055 -15.51933 -15.46555 -15.16171 -14.75563 -14.63252 -14.21949 -14.10285 -14.03267 -13.81128 -13.71749 -13.66870 -13.61150 -13.55801 -12.96713 -12.84057 -12.76671 -12.64770 -12.47102 -12.22393 -12.07326 -12.05621 -11.97769 -11.92150 -11.60046 -11.23341 -10.92788 -10.55190 -10.40514 -9.67227 -9.15495 -8.86786 -8.54504 -8.19411 -5.40489 0.01481 0.28986 1.47925 1.58199 1.65366 1.70981 1.74480 2.09989 2.14337 2.61558 2.79326 3.19137 3.43495 3.57511 3.69949 3.76974 3.97930 4.05559 4.14673 4.16481 4.24013 4.26580 4.39312 4.42678 4.44343 4.50868 4.64997 4.67081 4.74959 4.79413 4.80372 4.84350 4.88445 4.94149 4.95233 5.01226 5.10351 5.13318 5.14242 5.18492 5.23116 5.37626 5.43088 5.53803 5.64702 5.74722 5.83550 5.89677 6.09694 6.39637 6.44114 6.68877 7.14984 7.18210 7.80634 8.24801 9.01146 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011426 B = 0.004178 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.003560 B = 6700.018698 C = 7603.392554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.087 3.913 3 N -0.576 5.576 4 H 0.432 0.568 5 C 0.107 3.893 6 C -0.120 4.120 7 C -0.069 4.069 8 C -0.165 4.165 9 C 0.556 3.444 10 O -0.592 6.592 11 N -0.579 5.579 12 C 0.119 3.881 13 C -0.162 4.162 14 C 0.158 3.842 15 N -0.605 5.605 16 C -0.350 4.350 17 H 0.043 0.957 18 C -0.067 4.067 19 N -0.940 5.940 20 Si 1.095 2.905 21 H -0.290 1.290 22 H -0.298 1.298 23 H -0.266 1.266 24 C 0.153 3.847 25 C 0.108 3.892 26 C -0.045 4.045 27 C -0.130 4.130 28 C -0.195 4.195 29 C -0.077 4.077 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.037 0.963 40 H 0.053 0.947 41 H 0.256 0.744 42 H 0.022 0.978 43 H 0.013 0.987 44 H 0.097 0.903 45 H 0.066 0.934 46 H 0.120 0.880 47 H 0.057 0.943 48 H 0.050 0.950 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.934 17.028 11.197 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.021 4.021 3 N -0.181 5.181 4 H 0.272 0.728 5 C -0.002 4.002 6 C -0.141 4.141 7 C -0.089 4.089 8 C -0.169 4.169 9 C 0.346 3.654 10 O -0.474 6.474 11 N -0.308 5.308 12 C -0.001 4.001 13 C -0.203 4.203 14 C 0.032 3.968 15 N -0.328 5.328 16 C -0.480 4.480 17 H 0.061 0.939 18 C -0.265 4.265 19 N -0.581 5.581 20 Si 0.921 3.079 21 H -0.215 1.215 22 H -0.226 1.226 23 H -0.192 1.192 24 C 0.026 3.974 25 C -0.017 4.017 26 C -0.063 4.063 27 C -0.134 4.134 28 C -0.201 4.201 29 C -0.135 4.135 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.177 0.823 34 H 0.152 0.848 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.032 0.968 44 H 0.115 0.885 45 H 0.085 0.915 46 H 0.138 0.862 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.260 16.879 9.253 26.533 hybrid contribution 0.387 0.202 1.002 1.093 sum -17.873 17.082 10.255 26.766 Atomic orbital electron populations 1.20615 0.84567 1.05237 1.04277 1.20599 0.94895 0.84529 1.02046 1.41607 1.02793 1.09196 1.64471 0.72810 1.18415 0.85888 0.93463 1.02465 1.19856 0.88115 1.00604 1.05490 1.20541 0.98537 0.91562 0.98243 1.19469 0.91481 0.95111 1.10871 1.18833 0.87240 0.79189 0.80095 1.90713 1.50522 1.67154 1.39040 1.47458 1.17378 1.36507 1.29497 1.21018 0.91247 0.97780 0.90079 1.21786 0.99932 0.96698 1.01855 1.20371 0.94267 0.95819 0.86376 1.43831 1.22740 1.61385 1.04881 1.19983 0.91438 1.36202 1.00425 0.93875 1.26830 0.96927 0.95908 1.06831 1.70885 1.18859 1.44683 1.23700 0.83126 0.75294 0.76195 0.73276 1.21540 1.22559 1.19152 1.21774 0.87715 0.91083 0.96797 1.21543 0.85702 0.93381 1.01114 1.20922 0.90118 0.99652 0.95650 1.19255 0.93359 0.93102 1.07722 1.20341 0.89748 0.96354 1.13631 1.20140 1.01532 0.90067 1.01720 0.89408 0.88626 0.89205 0.82287 0.84832 0.88438 0.89158 0.88636 0.93417 0.94448 0.92889 0.93357 0.96037 0.96796 0.88461 0.91531 0.86241 0.92386 0.93097 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.18 71.24 0.72 0.01 16 2 C 0.09 1.47 7.08 40.85 0.29 1.76 16 3 N -0.58 -9.29 6.05 -175.79 -1.06 -10.35 16 4 H 0.43 3.66 8.96 -92.71 -0.83 2.83 16 5 C 0.11 2.51 7.27 39.19 0.28 2.80 16 6 C -0.12 -2.69 10.00 22.09 0.22 -2.47 16 7 C -0.07 -1.98 9.66 22.30 0.22 -1.76 16 8 C -0.17 -5.85 4.64 -20.09 -0.09 -5.94 16 9 C 0.56 23.58 7.15 86.73 0.62 24.20 16 10 O -0.59 -30.13 16.60 -3.99 -0.07 -30.20 16 11 N -0.58 -21.98 2.46 -834.84 -2.05 -24.03 16 12 C 0.12 3.52 5.04 84.23 0.42 3.95 16 13 C -0.16 -5.29 5.41 28.85 0.16 -5.13 16 14 C 0.16 6.28 5.59 87.02 0.49 6.77 16 15 N -0.60 -30.57 2.35 -699.18 -1.64 -32.22 16 16 C -0.35 -20.25 9.07 84.03 0.76 -19.49 16 17 H 0.04 2.52 7.95 -2.91 -0.02 2.49 16 18 C -0.07 -4.05 4.61 84.86 0.39 -3.65 16 19 N -0.94 -59.94 12.76 21.65 0.28 -59.67 16 20 Si 1.09 55.46 29.99 68.60 2.06 57.52 16 21 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 22 H -0.30 -15.19 7.11 99.48 0.71 -14.49 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 C 0.15 7.69 5.12 86.56 0.44 8.13 16 25 C 0.11 4.31 5.26 87.55 0.46 4.77 16 26 C -0.04 -1.52 7.76 22.74 0.18 -1.34 16 27 C -0.13 -3.74 6.34 -20.21 -0.13 -3.87 16 28 C -0.19 -4.59 6.32 -18.61 -0.12 -4.71 16 29 C -0.08 -1.63 10.17 71.23 0.72 -0.91 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 0.63 7.04 -2.38 -0.02 0.62 16 32 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 35 H 0.10 2.29 8.06 -2.39 -0.02 2.27 16 36 H 0.09 2.48 5.62 -2.39 -0.01 2.47 16 37 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.05 1.86 4.99 -2.39 -0.01 1.85 16 39 H 0.04 1.55 8.02 -2.39 -0.02 1.53 16 40 H 0.05 1.87 7.58 -2.38 -0.02 1.85 16 41 H 0.26 16.41 6.55 -92.71 -0.61 15.80 16 42 H 0.02 1.12 7.15 -2.39 -0.02 1.11 16 43 H 0.01 0.82 7.20 -2.38 -0.02 0.80 16 44 H 0.10 3.14 7.73 -2.39 -0.02 3.12 16 45 H 0.07 2.76 7.35 -2.39 -0.02 2.74 16 46 H 0.12 4.56 4.67 -2.91 -0.01 4.55 16 47 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 48 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.09 1.31 7.06 -2.39 -0.02 1.29 16 Total: -1.00 -82.85 380.95 3.87 -78.98 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.32 Total: 16.87 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 6.04 Total: 3.10 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -4.48 Total: -126.27 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.07 Total: -30.20 kcal Atomic # 14 Polarization: 55.46 SS G_CDS: 2.06 Total: 57.52 kcal Total: -82.85 3.87 -78.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989637129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.632 kcal (2) G-P(sol) polarization free energy of solvation -82.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds