Wall clock time and date at job start Wed Apr 1 2020 00:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35739 * 120.33449 * 2 1 4 4 C 1.40830 * 119.72309 * 179.97438 * 3 2 1 5 5 C 1.34545 * 120.57897 * 359.97438 * 4 3 2 6 6 N 1.37431 * 120.74230 * 359.97438 * 5 4 3 7 7 C 1.35135 * 131.28254 * 179.97438 * 6 5 4 8 8 C 1.38063 * 108.76962 * 180.02562 * 7 6 5 9 9 C 1.47497 * 126.37097 * 179.97438 * 8 7 6 10 10 O 1.21598 * 119.99823 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00091 * 359.97438 * 9 8 7 12 12 C 1.46500 * 119.99855 * 180.02562 * 11 9 8 13 13 H 1.09008 * 109.49447 * 324.93001 * 12 11 9 14 14 C 1.53039 * 109.50110 * 84.99770 * 12 11 9 15 15 C 1.53040 * 109.53256 * 58.58476 * 14 12 11 16 16 C 1.53191 * 109.31412 * 61.37068 * 15 14 12 17 17 N 1.46928 * 108.77235 * 305.36032 * 16 15 14 18 18 C 1.36938 * 120.62946 * 233.59167 * 17 16 15 19 19 H 1.07998 * 120.00475 * 151.59025 * 18 17 16 20 20 C 1.38812 * 119.99864 * 331.58366 * 18 17 16 21 21 N 1.31622 * 120.00281 * 160.51451 * 20 18 17 22 22 Si 1.86799 * 120.00153 * 340.51391 * 20 18 17 23 23 H 1.48496 * 109.47240 * 94.87002 * 22 20 18 24 24 H 1.48503 * 109.47308 * 214.87253 * 22 20 18 25 25 H 1.48502 * 109.47136 * 334.86646 * 22 20 18 26 26 C 1.46917 * 118.73928 * 53.60750 * 17 16 15 27 27 H 1.09005 * 109.58738 * 66.18149 * 26 17 16 28 28 C 1.53006 * 109.58691 * 186.60505 * 26 17 16 29 29 C 1.41197 * 107.25297 * 0.02562 * 8 7 6 30 30 C 1.37947 * 119.81344 * 359.78825 * 6 5 4 31 31 H 1.08997 * 109.47590 * 89.99167 * 1 2 3 32 32 H 1.09008 * 109.46875 * 329.98821 * 1 2 3 33 33 H 1.09000 * 109.47096 * 209.99981 * 1 2 3 34 34 H 1.07994 * 120.14031 * 0.02562 * 3 2 1 35 35 H 1.07993 * 119.71407 * 180.02562 * 4 3 2 36 36 H 1.08002 * 119.62808 * 180.02562 * 5 4 3 37 37 H 1.07997 * 125.61620 * 0.02562 * 7 6 5 38 38 H 0.97001 * 120.00029 * 359.97438 * 11 9 8 39 39 H 1.08997 * 109.45761 * 178.60658 * 14 12 11 40 40 H 1.08999 * 109.46214 * 298.58114 * 14 12 11 41 41 H 1.09005 * 109.49361 * 181.31910 * 15 14 12 42 42 H 1.08998 * 109.50497 * 301.37960 * 15 14 12 43 43 H 1.08998 * 109.59226 * 65.14694 * 16 15 14 44 44 H 1.09004 * 109.58920 * 185.57598 * 16 15 14 45 45 H 0.96997 * 120.00142 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.46908 * 179.29528 * 28 26 17 47 47 H 1.09004 * 109.46999 * 299.29062 * 28 26 17 48 48 H 1.08999 * 109.47266 * 59.28962 * 28 26 17 49 49 H 1.08008 * 126.56218 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1565 0.0005 5 6 4.2728 -0.0090 0.0016 6 7 3.6004 -1.2077 0.0027 7 6 4.0499 -2.4821 0.0034 8 6 2.9649 -3.3358 0.0038 9 6 3.0119 -4.8100 0.0040 10 8 1.9787 -5.4512 0.0049 11 7 4.1999 -5.4464 0.0033 12 6 4.2466 -6.9106 0.0030 13 1 3.4178 -7.3011 0.5938 14 6 4.1364 -7.4250 -1.4342 15 6 5.2806 -6.8502 -2.2724 16 6 6.6187 -7.3190 -1.6924 17 7 6.6710 -6.9550 -0.2699 18 6 7.7233 -6.2335 0.2274 19 1 7.5808 -5.5907 1.0834 20 6 8.9733 -6.3285 -0.3687 21 7 9.8724 -5.3889 -0.1658 22 14 9.3795 -7.7899 -1.4591 23 1 9.1190 -7.4366 -2.8777 24 1 10.8109 -8.1486 -1.2931 25 1 8.5315 -8.9463 -1.0731 26 6 5.5730 -7.3800 0.6088 27 1 5.5720 -8.4668 0.6929 28 6 5.7536 -6.7558 1.9940 29 6 1.8019 -2.5350 0.0027 30 6 2.2210 -1.2203 0.0071 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 0.8900 0.5141 33 1 -0.3633 -0.8900 0.5138 34 1 1.6603 2.1113 0.0004 35 1 4.1460 2.0887 0.0010 36 1 5.3528 -0.0026 0.0024 37 1 5.0871 -2.7832 0.0035 38 1 5.0241 -4.9349 0.0023 39 1 4.1960 -8.5133 -1.4359 40 1 3.1826 -7.1129 -1.8595 41 1 5.1881 -7.1982 -3.3013 42 1 5.2358 -5.7614 -2.2513 43 1 6.7031 -8.4008 -1.7961 44 1 7.4374 -6.8340 -2.2241 45 1 10.7460 -5.4555 -0.5820 46 1 4.9314 -7.0622 2.6407 47 1 6.6978 -7.0910 2.4233 48 1 5.7604 -5.6694 1.9049 49 1 0.7800 -2.8847 0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994207984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:11 Heat of formation + Delta-G solvation = 58.501363 kcal Electronic energy + Delta-G solvation = -30400.312671 eV Core-core repulsion = 26521.770230 eV Total energy + Delta-G solvation = -3878.542440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.26109 -39.64016 -37.77839 -36.61958 -34.21762 -33.96060 -32.63841 -31.78777 -30.72608 -29.84907 -28.43018 -27.04082 -26.46128 -24.92764 -23.91600 -22.39322 -22.02924 -21.55803 -20.79217 -19.64366 -18.85605 -17.80605 -16.94397 -16.49882 -16.08291 -15.60263 -15.51976 -15.21993 -15.19346 -14.63392 -14.30170 -14.07611 -13.84582 -13.54015 -13.50009 -13.31580 -13.27211 -13.08091 -12.89154 -12.53727 -12.18924 -12.08575 -11.84764 -11.69525 -11.63785 -11.54814 -11.27323 -11.19006 -10.80884 -10.64742 -10.51979 -10.27379 -10.21254 -9.93177 -9.61074 -9.52740 -9.46768 -8.70640 -8.63544 -8.38728 -7.40484 -7.00218 -6.00961 -3.38483 0.65574 1.28781 2.22916 2.62432 3.29629 3.35227 3.46312 3.48734 3.69022 3.83380 4.36663 4.48811 4.54594 4.71089 4.80344 4.84772 4.92085 5.13084 5.21057 5.31103 5.36369 5.39162 5.42286 5.44402 5.51217 5.56018 5.70930 5.74714 5.80187 5.86838 5.98433 5.99568 6.09044 6.12792 6.23628 6.27927 6.30256 6.33390 6.40392 6.47846 6.53870 6.69916 6.70448 6.76412 6.81079 6.88118 6.95154 7.09844 7.19998 7.90430 8.08366 8.27268 8.70024 8.87798 9.66958 10.04630 11.14201 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014205 B = 0.003320 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.644505 B = 8431.981892 C = 9599.626682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.041 4.041 3 C -0.144 4.144 4 C -0.135 4.135 5 C 0.039 3.961 6 N -0.337 5.337 7 C -0.001 4.001 8 C -0.165 4.165 9 C 0.583 3.417 10 O -0.554 6.554 11 N -0.699 5.699 12 C 0.135 3.865 13 H 0.081 0.919 14 C -0.122 4.122 15 C -0.132 4.132 16 C 0.126 3.874 17 N -0.603 5.603 18 C -0.262 4.262 19 H 0.092 0.908 20 C 0.027 3.973 21 N -0.909 5.909 22 Si 0.882 3.118 23 H -0.290 1.290 24 H -0.306 1.306 25 H -0.269 1.269 26 C 0.163 3.837 27 H 0.045 0.955 28 C -0.136 4.136 29 C -0.135 4.135 30 C 0.022 3.978 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.409 0.591 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.262 0.738 46 H 0.042 0.958 47 H 0.065 0.935 48 H 0.057 0.943 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.479 10.751 -0.045 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.042 4.042 3 C -0.164 4.164 4 C -0.155 4.155 5 C -0.079 4.079 6 N 0.000 5.000 7 C -0.135 4.135 8 C -0.173 4.173 9 C 0.370 3.630 10 O -0.434 6.434 11 N -0.349 5.349 12 C 0.028 3.972 13 H 0.099 0.901 14 C -0.161 4.161 15 C -0.172 4.172 16 C 0.000 4.000 17 N -0.328 5.328 18 C -0.390 4.390 19 H 0.110 0.890 20 C -0.172 4.172 21 N -0.552 5.552 22 Si 0.713 3.287 23 H -0.218 1.218 24 H -0.234 1.234 25 H -0.194 1.194 26 C 0.057 3.943 27 H 0.062 0.938 28 C -0.194 4.194 29 C -0.160 4.160 30 C -0.082 4.082 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.181 0.819 37 H 0.198 0.802 38 H 0.245 0.755 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.793 10.495 -0.040 18.138 hybrid contribution 1.094 -0.509 -0.803 1.450 sum -13.699 9.986 -0.843 16.973 Atomic orbital electron populations 1.20720 0.89776 1.03321 1.02834 1.19342 0.96349 0.90176 0.98353 1.20775 0.93698 0.97735 1.04231 1.20666 0.94749 0.97037 1.03057 1.21738 0.98653 0.83153 1.04359 1.41267 1.07122 1.05402 1.46237 1.22360 0.99979 0.80425 1.10727 1.19727 0.93131 0.93010 1.11398 1.17411 0.83824 0.85627 0.76136 1.90718 1.33541 1.67494 1.51637 1.45861 1.08108 1.07651 1.73326 1.21487 0.99531 0.79636 0.96519 0.90084 1.21787 0.98503 1.00005 0.95808 1.21955 0.96298 1.01195 0.97715 1.21352 0.95842 0.97168 0.85597 1.44487 1.22154 1.63844 1.02283 1.18909 0.86281 1.18321 1.15531 0.89007 1.25288 0.95685 0.97550 0.98713 1.69803 1.06639 1.32359 1.46372 0.86965 0.76392 0.85446 0.79926 1.21828 1.23414 1.19428 1.20750 0.86496 0.96513 0.90586 0.93788 1.21794 1.01018 1.01300 0.95244 1.21018 0.98616 0.88779 1.07546 1.18621 0.81874 0.94914 1.12764 0.90581 0.91030 0.90826 0.85145 0.83802 0.81927 0.80167 0.75459 0.91804 0.92378 0.92997 0.91866 0.95646 0.91118 0.92816 0.93886 0.91565 0.92369 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.91 36.00 0.36 -0.49 16 2 C -0.04 -0.44 5.90 -104.32 -0.62 -1.05 16 3 C -0.14 -1.31 9.72 -39.50 -0.38 -1.69 16 4 C -0.13 -1.19 9.97 -39.91 -0.40 -1.58 16 5 C 0.04 0.41 10.89 -16.35 -0.18 0.23 16 6 N -0.34 -4.41 2.92 -60.42 -0.18 -4.59 16 7 C 0.00 -0.01 11.09 -16.16 -0.18 -0.19 16 8 C -0.17 -2.59 6.12 -105.06 -0.64 -3.23 16 9 C 0.58 10.18 7.78 -12.49 -0.10 10.08 16 10 O -0.55 -11.09 16.58 5.28 0.09 -11.00 16 11 N -0.70 -11.75 3.46 -54.74 -0.19 -11.94 16 12 C 0.13 2.30 2.32 -67.81 -0.16 2.14 16 13 H 0.08 1.39 7.58 -51.92 -0.39 1.00 16 14 C -0.12 -2.04 5.58 -26.69 -0.15 -2.19 16 15 C -0.13 -2.34 5.93 -26.61 -0.16 -2.50 16 16 C 0.13 2.60 4.19 -3.71 -0.02 2.59 16 17 N -0.60 -12.99 2.42 -164.77 -0.40 -13.38 16 18 C -0.26 -6.58 9.07 -15.06 -0.14 -6.71 16 19 H 0.09 2.41 6.36 -52.49 -0.33 2.07 16 20 C 0.03 0.72 5.24 -17.43 -0.09 0.63 16 21 N -0.91 -26.24 13.97 55.49 0.78 -25.47 16 22 Si 0.88 21.59 24.35 -169.99 -4.14 17.45 16 23 H -0.29 -6.97 6.72 56.52 0.38 -6.59 16 24 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 25 H -0.27 -6.50 6.44 56.52 0.36 -6.14 16 26 C 0.16 3.02 3.20 -67.60 -0.22 2.80 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 C -0.14 -2.39 7.71 37.16 0.29 -2.10 16 29 C -0.14 -1.96 10.27 -38.55 -0.40 -2.36 16 30 C 0.02 0.29 6.60 -84.00 -0.55 -0.26 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.42 8.09 -51.92 -0.42 0.01 16 33 H 0.07 0.58 7.69 -51.93 -0.40 0.18 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.18 2.35 7.42 -52.49 -0.39 1.96 16 38 H 0.41 7.02 6.66 -40.82 -0.27 6.75 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.16 7.53 -51.93 -0.39 0.77 16 43 H 0.03 0.53 6.95 -51.93 -0.36 0.17 16 44 H 0.07 1.61 4.61 -51.93 -0.24 1.37 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 1.25 7.65 -51.93 -0.40 0.85 16 48 H 0.06 1.04 6.38 -51.93 -0.33 0.71 16 49 H 0.15 2.05 7.93 -52.48 -0.42 1.64 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -31.33 381.65 -9.36 -40.69 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.34 Total: 8.39 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -3.73 Total: -5.89 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.01 Total: -55.39 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.33 -9.36 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994207984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.188 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds