Wall clock time and date at job start Wed Apr 1 2020 00:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35739 * 120.33449 * 2 1 4 4 C 1.40830 * 119.72309 * 179.97438 * 3 2 1 5 5 C 1.34545 * 120.57897 * 359.97438 * 4 3 2 6 6 N 1.37431 * 120.74230 * 359.97438 * 5 4 3 7 7 C 1.35135 * 131.28254 * 179.97438 * 6 5 4 8 8 C 1.38063 * 108.76962 * 180.02562 * 7 6 5 9 9 C 1.47497 * 126.37097 * 179.97438 * 8 7 6 10 10 O 1.21598 * 119.99823 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00091 * 359.97438 * 9 8 7 12 12 C 1.46500 * 119.99855 * 180.02562 * 11 9 8 13 13 H 1.09008 * 109.49447 * 324.93001 * 12 11 9 14 14 C 1.53039 * 109.50110 * 84.99770 * 12 11 9 15 15 C 1.53040 * 109.53256 * 58.58476 * 14 12 11 16 16 C 1.53191 * 109.31412 * 61.37068 * 15 14 12 17 17 N 1.46928 * 108.77235 * 305.36032 * 16 15 14 18 18 C 1.36938 * 120.62946 * 233.59167 * 17 16 15 19 19 H 1.07998 * 120.00475 * 151.59025 * 18 17 16 20 20 C 1.38812 * 119.99864 * 331.58366 * 18 17 16 21 21 N 1.31622 * 120.00281 * 160.51451 * 20 18 17 22 22 Si 1.86799 * 120.00153 * 340.51391 * 20 18 17 23 23 H 1.48496 * 109.47240 * 94.87002 * 22 20 18 24 24 H 1.48503 * 109.47308 * 214.87253 * 22 20 18 25 25 H 1.48502 * 109.47136 * 334.86646 * 22 20 18 26 26 C 1.46917 * 118.73928 * 53.60750 * 17 16 15 27 27 H 1.09005 * 109.58738 * 66.18149 * 26 17 16 28 28 C 1.53006 * 109.58691 * 186.60505 * 26 17 16 29 29 C 1.41197 * 107.25297 * 0.02562 * 8 7 6 30 30 C 1.37947 * 119.81344 * 359.78825 * 6 5 4 31 31 H 1.08997 * 109.47590 * 89.99167 * 1 2 3 32 32 H 1.09008 * 109.46875 * 329.98821 * 1 2 3 33 33 H 1.09000 * 109.47096 * 209.99981 * 1 2 3 34 34 H 1.07994 * 120.14031 * 0.02562 * 3 2 1 35 35 H 1.07993 * 119.71407 * 180.02562 * 4 3 2 36 36 H 1.08002 * 119.62808 * 180.02562 * 5 4 3 37 37 H 1.07997 * 125.61620 * 0.02562 * 7 6 5 38 38 H 0.97001 * 120.00029 * 359.97438 * 11 9 8 39 39 H 1.08997 * 109.45761 * 178.60658 * 14 12 11 40 40 H 1.08999 * 109.46214 * 298.58114 * 14 12 11 41 41 H 1.09005 * 109.49361 * 181.31910 * 15 14 12 42 42 H 1.08998 * 109.50497 * 301.37960 * 15 14 12 43 43 H 1.08998 * 109.59226 * 65.14694 * 16 15 14 44 44 H 1.09004 * 109.58920 * 185.57598 * 16 15 14 45 45 H 0.96997 * 120.00142 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.46908 * 179.29528 * 28 26 17 47 47 H 1.09004 * 109.46999 * 299.29062 * 28 26 17 48 48 H 1.08999 * 109.47266 * 59.28962 * 28 26 17 49 49 H 1.08008 * 126.56218 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1565 0.0005 5 6 4.2728 -0.0090 0.0016 6 7 3.6004 -1.2077 0.0027 7 6 4.0499 -2.4821 0.0034 8 6 2.9649 -3.3358 0.0038 9 6 3.0119 -4.8100 0.0040 10 8 1.9787 -5.4512 0.0049 11 7 4.1999 -5.4464 0.0033 12 6 4.2466 -6.9106 0.0030 13 1 3.4178 -7.3011 0.5938 14 6 4.1364 -7.4250 -1.4342 15 6 5.2806 -6.8502 -2.2724 16 6 6.6187 -7.3190 -1.6924 17 7 6.6710 -6.9550 -0.2699 18 6 7.7233 -6.2335 0.2274 19 1 7.5808 -5.5907 1.0834 20 6 8.9733 -6.3285 -0.3687 21 7 9.8724 -5.3889 -0.1658 22 14 9.3795 -7.7899 -1.4591 23 1 9.1190 -7.4366 -2.8777 24 1 10.8109 -8.1486 -1.2931 25 1 8.5315 -8.9463 -1.0731 26 6 5.5730 -7.3800 0.6088 27 1 5.5720 -8.4668 0.6929 28 6 5.7536 -6.7558 1.9940 29 6 1.8019 -2.5350 0.0027 30 6 2.2210 -1.2203 0.0071 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 0.8900 0.5141 33 1 -0.3633 -0.8900 0.5138 34 1 1.6603 2.1113 0.0004 35 1 4.1460 2.0887 0.0010 36 1 5.3528 -0.0026 0.0024 37 1 5.0871 -2.7832 0.0035 38 1 5.0241 -4.9349 0.0023 39 1 4.1960 -8.5133 -1.4359 40 1 3.1826 -7.1129 -1.8595 41 1 5.1881 -7.1982 -3.3013 42 1 5.2358 -5.7614 -2.2513 43 1 6.7031 -8.4008 -1.7961 44 1 7.4374 -6.8340 -2.2241 45 1 10.7460 -5.4555 -0.5820 46 1 4.9314 -7.0622 2.6407 47 1 6.6978 -7.0910 2.4233 48 1 5.7604 -5.6694 1.9049 49 1 0.7800 -2.8847 0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994207984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:10 Heat of formation + Delta-G solvation = 41.847330 kcal Electronic energy + Delta-G solvation = -30401.034844 eV Core-core repulsion = 26521.770230 eV Total energy + Delta-G solvation = -3879.264613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.22562 -41.06116 -39.23871 -37.53983 -35.63514 -35.01984 -34.21051 -33.49270 -32.10982 -31.02360 -29.41944 -27.99796 -27.76723 -26.68129 -25.15865 -23.90944 -22.94687 -22.60709 -22.25158 -20.95155 -20.34583 -18.81864 -18.36649 -17.96758 -17.24182 -17.05455 -16.67536 -16.61214 -16.22021 -15.98926 -15.74665 -15.25294 -15.21818 -14.94690 -14.80041 -14.51746 -14.28240 -14.26007 -14.09510 -13.84005 -13.66851 -13.40306 -13.18712 -13.11835 -12.73088 -12.57060 -12.49210 -12.34712 -12.27749 -12.14802 -12.05683 -11.91283 -11.57915 -11.36889 -11.19955 -11.08971 -11.00242 -10.62135 -9.98483 -9.52531 -8.85210 -8.31493 -8.08605 -5.40728 -0.19641 0.36745 1.10511 1.33768 1.46095 1.52549 1.69760 2.37074 2.47761 2.50069 2.58001 3.11262 3.30567 3.52767 3.75297 3.83912 3.95386 4.01690 4.01927 4.08638 4.10810 4.19028 4.25607 4.41664 4.49245 4.49959 4.58030 4.62506 4.75991 4.81584 4.82892 4.83604 4.88793 4.93405 4.96534 5.01378 5.08052 5.14661 5.19815 5.24090 5.28721 5.37229 5.38559 5.46539 5.46976 5.67367 5.70338 5.90608 5.95389 6.23988 6.27227 6.69975 6.96686 7.32881 7.69501 8.10046 9.09892 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014205 B = 0.003320 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.644505 B = 8431.981892 C = 9599.626682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.064 4.064 3 C -0.133 4.133 4 C -0.121 4.121 5 C 0.010 3.990 6 N -0.339 5.339 7 C -0.012 4.012 8 C -0.188 4.188 9 C 0.585 3.415 10 O -0.584 6.584 11 N -0.695 5.695 12 C 0.139 3.861 13 H 0.085 0.915 14 C -0.117 4.117 15 C -0.123 4.123 16 C 0.122 3.878 17 N -0.611 5.611 18 C -0.231 4.231 19 H 0.075 0.925 20 C -0.029 4.029 21 N -0.954 5.954 22 Si 0.933 3.067 23 H -0.284 1.284 24 H -0.321 1.321 25 H -0.261 1.261 26 C 0.162 3.838 27 H 0.057 0.943 28 C -0.130 4.130 29 C -0.161 4.161 30 C 0.022 3.978 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.165 0.835 35 H 0.181 0.819 36 H 0.180 0.820 37 H 0.183 0.817 38 H 0.406 0.594 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.033 0.967 44 H 0.049 0.951 45 H 0.257 0.743 46 H 0.067 0.933 47 H 0.049 0.951 48 H 0.048 0.952 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.149 12.061 -0.481 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.064 4.064 3 C -0.153 4.153 4 C -0.141 4.141 5 C -0.107 4.107 6 N -0.001 5.001 7 C -0.146 4.146 8 C -0.196 4.196 9 C 0.374 3.626 10 O -0.466 6.466 11 N -0.344 5.344 12 C 0.032 3.968 13 H 0.103 0.897 14 C -0.155 4.155 15 C -0.162 4.162 16 C -0.003 4.003 17 N -0.336 5.336 18 C -0.361 4.361 19 H 0.092 0.908 20 C -0.224 4.224 21 N -0.601 5.601 22 Si 0.764 3.236 23 H -0.212 1.212 24 H -0.251 1.251 25 H -0.185 1.185 26 C 0.056 3.944 27 H 0.074 0.926 28 C -0.187 4.187 29 C -0.185 4.185 30 C -0.084 4.084 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.183 0.817 35 H 0.198 0.802 36 H 0.198 0.802 37 H 0.200 0.800 38 H 0.243 0.757 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.497 11.784 -0.485 20.279 hybrid contribution 1.518 -0.716 -0.609 1.786 sum -14.978 11.068 -1.094 18.656 Atomic orbital electron populations 1.20770 0.88000 1.04113 1.03527 1.19735 0.97814 0.89607 0.99292 1.21290 0.94019 0.98514 1.01443 1.21221 0.95031 0.97733 1.00101 1.22306 0.99897 0.82777 1.05752 1.41441 1.07359 1.05791 1.45540 1.22282 0.99665 0.81058 1.11607 1.19642 0.94303 0.92193 1.13427 1.17635 0.83327 0.86369 0.75272 1.90684 1.34360 1.68306 1.53278 1.45826 1.07889 1.07589 1.73120 1.21428 0.98552 0.79755 0.97025 0.89660 1.21750 0.97861 1.00950 0.94948 1.21840 0.94828 1.00563 0.98964 1.21381 0.96795 0.97286 0.84829 1.44582 1.21879 1.63742 1.03369 1.18883 0.86796 1.16686 1.13685 0.90766 1.25774 0.96108 0.99498 1.00982 1.69913 1.07058 1.34193 1.48949 0.86131 0.75168 0.83277 0.79050 1.21169 1.25092 1.18493 1.20911 0.85887 0.97156 0.90404 0.92588 1.21722 1.01134 1.00617 0.95266 1.21074 0.98396 0.89571 1.09462 1.19001 0.82240 0.95491 1.11630 0.89866 0.88681 0.91620 0.81722 0.80165 0.80240 0.80004 0.75742 0.90102 0.92408 0.90802 0.92934 0.94949 0.93241 0.93375 0.91419 0.93189 0.93305 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.91 71.23 0.71 -0.74 16 2 C -0.06 -1.22 5.90 -19.67 -0.12 -1.33 16 3 C -0.13 -1.91 9.72 22.32 0.22 -1.70 16 4 C -0.12 -1.71 9.97 22.06 0.22 -1.49 16 5 C 0.01 0.19 10.89 82.97 0.90 1.09 16 6 N -0.34 -8.76 2.92 -345.06 -1.01 -9.77 16 7 C -0.01 -0.34 11.09 84.14 0.93 0.59 16 8 C -0.19 -6.10 6.12 -20.15 -0.12 -6.22 16 9 C 0.59 20.83 7.78 86.68 0.67 21.51 16 10 O -0.58 -23.69 16.58 -4.03 -0.07 -23.76 16 11 N -0.69 -23.43 3.46 -445.36 -1.54 -24.97 16 12 C 0.14 4.57 2.32 45.07 0.10 4.68 16 13 H 0.09 2.80 7.58 -2.38 -0.02 2.79 16 14 C -0.12 -3.65 5.58 30.62 0.17 -3.48 16 15 C -0.12 -4.13 5.93 30.67 0.18 -3.95 16 16 C 0.12 4.88 4.19 86.36 0.36 5.24 16 17 N -0.61 -25.87 2.42 -675.22 -1.63 -27.50 16 18 C -0.23 -11.69 9.07 84.03 0.76 -10.93 16 19 H 0.07 3.99 6.36 -2.91 -0.02 3.97 16 20 C -0.03 -1.58 5.24 84.86 0.45 -1.14 16 21 N -0.95 -56.66 13.97 21.65 0.30 -56.36 16 22 Si 0.93 44.93 24.35 68.60 1.67 46.60 16 23 H -0.28 -13.24 6.72 99.48 0.67 -12.57 16 24 H -0.32 -16.17 7.11 99.48 0.71 -15.46 16 25 H -0.26 -11.99 6.44 99.48 0.64 -11.35 16 26 C 0.16 5.78 3.20 44.98 0.14 5.93 16 27 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 28 C -0.13 -4.49 7.71 71.98 0.56 -3.93 16 29 C -0.16 -4.82 10.27 22.94 0.24 -4.59 16 30 C 0.02 0.57 6.60 38.90 0.26 0.82 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.82 8.09 -2.38 -0.02 0.80 16 33 H 0.06 0.99 7.69 -2.39 -0.02 0.97 16 34 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.18 5.00 7.42 -2.91 -0.02 4.98 16 38 H 0.41 14.21 6.66 -92.71 -0.62 13.59 16 39 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 42 H 0.05 1.88 7.53 -2.39 -0.02 1.86 16 43 H 0.03 1.27 6.95 -2.39 -0.02 1.26 16 44 H 0.05 2.21 4.61 -2.39 -0.01 2.20 16 45 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 46 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.05 1.87 7.65 -2.38 -0.02 1.86 16 48 H 0.05 1.76 6.38 -2.39 -0.02 1.75 16 49 H 0.15 4.30 7.93 -2.91 -0.02 4.28 16 Total: -1.00 -68.89 381.65 4.60 -64.28 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.24 Total: 31.13 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 6.63 Total: 0.35 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -3.87 Total: -118.61 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.07 Total: -23.76 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.67 Total: 46.60 kcal Total: -68.89 4.60 -64.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994207984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.129 kcal (2) G-P(sol) polarization free energy of solvation -68.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds