Wall clock time and date at job start Wed Apr 1 2020 00:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38137 * 125.60903 * 2 1 4 4 C 1.47062 * 125.42835 * 0.02562 * 3 2 1 5 5 O 1.21648 * 120.00343 * 354.16968 * 4 3 2 6 6 N 1.34782 * 120.00028 * 174.16964 * 4 3 2 7 7 C 1.47022 * 125.64726 * 4.70663 * 6 4 3 8 8 C 1.54322 * 107.27326 * 181.02139 * 7 6 4 9 9 H 1.08998 * 110.72149 * 263.83130 * 8 7 6 10 10 N 1.46497 * 110.72541 * 140.55077 * 8 7 6 11 11 C 1.36937 * 119.99770 * 86.45227 * 10 8 7 12 12 H 1.07994 * 120.00049 * 0.02562 * 11 10 8 13 13 C 1.38817 * 120.00102 * 180.02562 * 11 10 8 14 14 N 1.31624 * 119.99654 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00121 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46794 * 59.99973 * 15 13 11 17 17 H 1.48499 * 109.46899 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46950 * 299.99967 * 15 13 11 19 19 C 1.55161 * 102.93859 * 22.18847 * 8 7 6 20 20 C 1.53002 * 111.00442 * 82.57800 * 19 8 7 21 21 C 1.53009 * 111.00352 * 206.38595 * 19 8 7 22 22 C 1.47426 * 125.65052 * 184.39152 * 6 4 3 23 23 C 1.35862 * 109.14219 * 180.02562 * 3 2 1 24 24 C 1.41588 * 107.72392 * 0.02562 * 23 3 2 25 25 C 1.40107 * 133.37272 * 179.97438 * 24 23 3 26 26 C 1.36444 * 119.82438 * 180.02562 * 25 24 23 27 27 C 1.38938 * 120.61469 * 359.72290 * 26 25 24 28 28 C 1.37665 * 120.65033 * 0.56265 * 27 26 25 29 29 C 1.37480 * 125.59958 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47179 * 275.54513 * 1 2 3 31 31 H 1.09006 * 109.47016 * 35.53941 * 1 2 3 32 32 H 1.08993 * 109.47283 * 155.53859 * 1 2 3 33 33 H 1.09004 * 109.88179 * 300.43708 * 7 6 4 34 34 H 1.08991 * 109.88802 * 61.60167 * 7 6 4 35 35 H 0.96997 * 120.00435 * 266.45679 * 10 8 7 36 36 H 0.97001 * 119.99696 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.46968 * 59.99845 * 20 19 8 38 38 H 1.08999 * 109.46891 * 179.97438 * 20 19 8 39 39 H 1.09000 * 109.46943 * 299.99749 * 20 19 8 40 40 H 1.09005 * 109.46575 * 59.99917 * 21 19 8 41 41 H 1.08999 * 109.47111 * 180.02562 * 21 19 8 42 42 H 1.08997 * 109.46925 * 300.00176 * 21 19 8 43 43 H 1.09002 * 110.36663 * 274.75033 * 22 6 4 44 44 H 1.09003 * 110.36265 * 37.07442 * 22 6 4 45 45 H 1.08002 * 126.13793 * 179.97438 * 23 3 2 46 46 H 1.07992 * 120.08784 * 0.02789 * 25 24 23 47 47 H 1.07995 * 119.68872 * 179.97438 * 26 25 24 48 48 H 1.08003 * 119.67123 * 180.28234 * 27 26 25 49 49 H 1.08007 * 120.09895 * 179.71792 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.1231 0.0000 4 6 1.7915 2.5139 0.0005 5 8 0.6026 2.7486 -0.1060 6 7 2.6707 3.5285 0.1191 7 6 4.1343 3.3941 0.1568 8 6 4.7204 4.8114 0.3270 9 1 5.0039 5.2301 -0.6386 10 7 5.8647 4.7929 1.2416 11 6 7.1187 4.5207 0.7638 12 1 7.2643 4.3202 -0.2873 13 6 8.2030 4.5026 1.6305 14 7 8.0254 4.7465 2.9117 15 14 9.9138 4.1320 0.9785 16 1 10.2857 5.1465 -0.0402 17 1 10.8895 4.1737 2.0972 18 1 9.9262 2.7819 0.3602 19 6 3.5379 5.6047 0.9433 20 6 3.4639 5.3915 2.4566 21 6 3.6418 7.0937 0.6068 22 6 2.3244 4.9576 0.2257 23 6 3.5722 0.7380 -0.0006 24 6 3.6033 -0.6776 -0.0016 25 6 4.6426 -1.6172 -0.0029 26 6 4.3521 -2.9504 -0.0041 27 6 3.0332 -3.3872 0.0017 28 6 1.9946 -2.4836 -0.0028 29 6 2.2653 -1.1179 -0.0005 30 1 -0.3633 0.0993 1.0228 31 1 -0.3633 0.8363 -0.5974 32 1 -0.3633 -0.9353 -0.4255 33 1 4.4274 2.7680 0.9997 34 1 4.4904 2.9551 -0.7751 35 1 5.7340 4.9733 2.1857 36 1 8.7831 4.7342 3.5172 37 1 4.3912 5.7323 2.9173 38 1 2.6267 5.9590 2.8629 39 1 3.3214 4.3316 2.6676 40 1 3.6236 7.2237 -0.4754 41 1 2.8009 7.6262 1.0512 42 1 4.5750 7.4919 1.0049 43 1 2.1916 5.3908 -0.7657 44 1 1.4201 5.0853 0.8207 45 1 4.4303 1.3939 -0.0011 46 1 5.6709 -1.2871 -0.0029 47 1 5.1550 -3.6727 -0.0056 48 1 2.8207 -4.4461 0.0053 49 1 0.9727 -2.8330 -0.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996208392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:04 Heat of formation + Delta-G solvation = 56.607067 kcal Electronic energy + Delta-G solvation = -30384.299585 eV Core-core repulsion = 26505.675002 eV Total energy + Delta-G solvation = -3878.624583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.65846 -39.89411 -38.03157 -36.74473 -34.36621 -33.59619 -32.67271 -30.87961 -30.32460 -29.38594 -27.74074 -27.04071 -26.71962 -25.96248 -24.18970 -23.37196 -21.67759 -21.54946 -20.45039 -19.38033 -18.69681 -17.28784 -16.90184 -16.62657 -16.44140 -15.99189 -15.44755 -15.31173 -14.60320 -14.38613 -14.09034 -14.03119 -13.90098 -13.75898 -13.52780 -13.18175 -12.99204 -12.95577 -12.66274 -12.53162 -12.40592 -12.10869 -11.98520 -11.69438 -11.56436 -11.27455 -11.20080 -11.06808 -10.90966 -10.88747 -10.59409 -10.43593 -10.27803 -9.97395 -9.87193 -9.74424 -9.67136 -9.00267 -8.49198 -8.14349 -7.67210 -7.11434 -5.87293 -3.17938 0.79757 1.62217 2.16341 2.46914 3.32206 3.38976 3.41464 3.44553 3.44848 3.91285 4.45141 4.53262 4.62184 4.73218 4.87248 4.97758 5.01197 5.10315 5.14805 5.22629 5.37309 5.42461 5.47079 5.51836 5.56884 5.63172 5.65822 5.68393 5.74635 5.78239 5.92163 5.93749 5.99736 6.03564 6.08689 6.18885 6.27507 6.33402 6.34770 6.41975 6.50417 6.59330 6.60927 6.67791 6.73441 6.74271 6.85364 7.07822 7.22587 7.60593 7.65514 8.20746 8.30926 9.43135 9.96532 10.31574 11.34577 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009240 B = 0.004085 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.709248 B = 6851.878207 C = 9446.892049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.455 5.455 3 C 0.025 3.975 4 C 0.594 3.406 5 O -0.557 6.557 6 N -0.594 5.594 7 C 0.062 3.938 8 C 0.180 3.820 9 H 0.068 0.932 10 N -0.710 5.710 11 C -0.251 4.251 12 H 0.072 0.928 13 C -0.005 4.005 14 N -0.929 5.929 15 Si 0.906 3.094 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.284 1.284 19 C -0.086 4.086 20 C -0.133 4.133 21 C -0.129 4.129 22 C 0.122 3.878 23 C -0.147 4.147 24 C -0.117 4.117 25 C -0.056 4.056 26 C -0.155 4.155 27 C -0.092 4.092 28 C -0.134 4.134 29 C 0.107 3.893 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.390 0.610 36 H 0.257 0.743 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.173 0.827 46 H 0.127 0.873 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.747 -8.791 -5.492 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.136 5.136 3 C -0.084 4.084 4 C 0.383 3.617 5 O -0.438 6.438 6 N -0.325 5.325 7 C -0.063 4.063 8 C 0.067 3.933 9 H 0.085 0.915 10 N -0.352 5.352 11 C -0.382 4.382 12 H 0.090 0.910 13 C -0.202 4.202 14 N -0.576 5.576 15 Si 0.737 3.263 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.211 1.211 19 C -0.087 4.087 20 C -0.190 4.190 21 C -0.187 4.187 22 C -0.001 4.001 23 C -0.173 4.173 24 C -0.121 4.121 25 C -0.075 4.075 26 C -0.174 4.174 27 C -0.112 4.112 28 C -0.154 4.154 29 C -0.003 4.003 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.228 0.772 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.190 0.810 46 H 0.145 0.855 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.613 -8.666 -5.603 17.083 hybrid contribution 0.895 -0.386 0.018 0.975 sum -12.719 -9.051 -5.585 16.580 Atomic orbital electron populations 1.22075 0.76244 1.04257 1.03649 1.43769 1.06016 1.03156 1.60663 1.19718 0.90146 0.87389 1.11192 1.16723 0.84884 0.82845 0.77269 1.90737 1.15680 1.84965 1.52436 1.48109 1.07915 1.06280 1.70235 1.23805 0.77341 1.03431 1.01730 1.21244 0.87245 0.90104 0.94678 0.91460 1.42528 1.01809 1.83536 1.07362 1.19203 0.84389 1.41069 0.93501 0.91024 1.24737 0.98010 1.02017 0.95426 1.69643 1.30530 1.55232 1.02203 0.86291 0.84241 0.78237 0.77534 1.21193 1.21696 1.21093 1.22034 0.94648 0.95832 0.96222 1.21657 1.02050 1.01595 0.93738 1.21650 1.02284 0.93671 1.01062 1.22403 0.98287 0.79147 1.00240 1.21944 0.96123 0.94313 1.04893 1.18260 0.92356 0.93646 1.07880 1.20497 0.98208 0.92080 0.96676 1.20606 0.96439 0.95519 1.04857 1.20814 0.92255 0.98718 0.99390 1.19981 0.99470 0.89002 1.06982 1.18387 0.90031 0.88250 1.03612 0.91290 0.88253 0.90479 0.89749 0.91497 0.77248 0.93274 0.90760 0.93265 0.92732 0.92747 0.93057 0.91216 0.91283 0.90683 0.81034 0.85494 0.86016 0.85857 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.44 59.85 0.62 1.54 16 2 N -0.45 -6.70 3.22 -117.70 -0.38 -7.08 16 3 C 0.02 0.40 6.79 -82.30 -0.56 -0.16 16 4 C 0.59 10.07 7.82 -12.68 -0.10 9.97 16 5 O -0.56 -10.19 14.95 5.23 0.08 -10.11 16 6 N -0.59 -9.49 3.31 -171.78 -0.57 -10.06 16 7 C 0.06 1.04 4.40 -3.07 -0.01 1.03 16 8 C 0.18 3.19 2.85 -66.10 -0.19 3.00 16 9 H 0.07 1.20 8.02 -51.93 -0.42 0.79 16 10 N -0.71 -15.84 5.08 -51.65 -0.26 -16.10 16 11 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 12 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 13 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 14 N -0.93 -26.29 13.06 55.49 0.72 -25.56 16 15 Si 0.91 21.15 29.55 -169.99 -5.02 16.12 16 16 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.09 -1.29 0.87 -152.24 -0.13 -1.43 16 20 C -0.13 -2.09 7.94 37.16 0.30 -1.80 16 21 C -0.13 -1.74 8.68 37.16 0.32 -1.42 16 22 C 0.12 1.76 5.83 -2.41 -0.01 1.75 16 23 C -0.15 -2.34 9.29 -39.16 -0.36 -2.70 16 24 C -0.12 -1.78 6.16 -106.93 -0.66 -2.44 16 25 C -0.06 -0.74 10.06 -39.53 -0.40 -1.14 16 26 C -0.16 -1.75 9.97 -39.97 -0.40 -2.15 16 27 C -0.09 -0.98 10.01 -39.53 -0.40 -1.37 16 28 C -0.13 -1.57 9.90 -39.42 -0.39 -1.96 16 29 C 0.11 1.53 6.81 -83.98 -0.57 0.96 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.26 6.45 -51.93 -0.34 0.93 16 32 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 33 H 0.08 1.54 6.62 -51.93 -0.34 1.20 16 34 H 0.07 1.07 7.06 -51.93 -0.37 0.70 16 35 H 0.39 9.28 5.26 -40.82 -0.21 9.07 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 37 H 0.07 1.31 6.34 -51.93 -0.33 0.99 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.92 7.91 -51.93 -0.41 0.51 16 40 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 0.93 7.99 -51.93 -0.41 0.51 16 44 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 45 H 0.17 2.72 4.22 -52.49 -0.22 2.50 16 46 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 47 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 48 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 49 H 0.12 1.09 7.91 -52.48 -0.41 0.68 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -29.91 388.37 -9.98 -39.89 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.22 Total: 12.06 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.19 Total: -5.02 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.49 Total: -58.80 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.91 -9.98 -39.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996208392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.498 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds