Wall clock time and date at job start Wed Apr 1 2020 00:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38137 * 125.60903 * 2 1 4 4 C 1.47062 * 125.42835 * 0.02562 * 3 2 1 5 5 O 1.21648 * 120.00343 * 354.16968 * 4 3 2 6 6 N 1.34782 * 120.00028 * 174.16964 * 4 3 2 7 7 C 1.47022 * 125.64726 * 4.70663 * 6 4 3 8 8 C 1.54322 * 107.27326 * 181.02139 * 7 6 4 9 9 H 1.08998 * 110.72149 * 263.83130 * 8 7 6 10 10 N 1.46497 * 110.72541 * 140.55077 * 8 7 6 11 11 C 1.36937 * 119.99770 * 86.45227 * 10 8 7 12 12 H 1.07994 * 120.00049 * 0.02562 * 11 10 8 13 13 C 1.38817 * 120.00102 * 180.02562 * 11 10 8 14 14 N 1.31624 * 119.99654 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00121 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46794 * 59.99973 * 15 13 11 17 17 H 1.48499 * 109.46899 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46950 * 299.99967 * 15 13 11 19 19 C 1.55161 * 102.93859 * 22.18847 * 8 7 6 20 20 C 1.53002 * 111.00442 * 82.57800 * 19 8 7 21 21 C 1.53009 * 111.00352 * 206.38595 * 19 8 7 22 22 C 1.47426 * 125.65052 * 184.39152 * 6 4 3 23 23 C 1.35862 * 109.14219 * 180.02562 * 3 2 1 24 24 C 1.41588 * 107.72392 * 0.02562 * 23 3 2 25 25 C 1.40107 * 133.37272 * 179.97438 * 24 23 3 26 26 C 1.36444 * 119.82438 * 180.02562 * 25 24 23 27 27 C 1.38938 * 120.61469 * 359.72290 * 26 25 24 28 28 C 1.37665 * 120.65033 * 0.56265 * 27 26 25 29 29 C 1.37480 * 125.59958 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47179 * 275.54513 * 1 2 3 31 31 H 1.09006 * 109.47016 * 35.53941 * 1 2 3 32 32 H 1.08993 * 109.47283 * 155.53859 * 1 2 3 33 33 H 1.09004 * 109.88179 * 300.43708 * 7 6 4 34 34 H 1.08991 * 109.88802 * 61.60167 * 7 6 4 35 35 H 0.96997 * 120.00435 * 266.45679 * 10 8 7 36 36 H 0.97001 * 119.99696 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.46968 * 59.99845 * 20 19 8 38 38 H 1.08999 * 109.46891 * 179.97438 * 20 19 8 39 39 H 1.09000 * 109.46943 * 299.99749 * 20 19 8 40 40 H 1.09005 * 109.46575 * 59.99917 * 21 19 8 41 41 H 1.08999 * 109.47111 * 180.02562 * 21 19 8 42 42 H 1.08997 * 109.46925 * 300.00176 * 21 19 8 43 43 H 1.09002 * 110.36663 * 274.75033 * 22 6 4 44 44 H 1.09003 * 110.36265 * 37.07442 * 22 6 4 45 45 H 1.08002 * 126.13793 * 179.97438 * 23 3 2 46 46 H 1.07992 * 120.08784 * 0.02789 * 25 24 23 47 47 H 1.07995 * 119.68872 * 179.97438 * 26 25 24 48 48 H 1.08003 * 119.67123 * 180.28234 * 27 26 25 49 49 H 1.08007 * 120.09895 * 179.71792 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.1231 0.0000 4 6 1.7915 2.5139 0.0005 5 8 0.6026 2.7486 -0.1060 6 7 2.6707 3.5285 0.1191 7 6 4.1343 3.3941 0.1568 8 6 4.7204 4.8114 0.3270 9 1 5.0039 5.2301 -0.6386 10 7 5.8647 4.7929 1.2416 11 6 7.1187 4.5207 0.7638 12 1 7.2643 4.3202 -0.2873 13 6 8.2030 4.5026 1.6305 14 7 8.0254 4.7465 2.9117 15 14 9.9138 4.1320 0.9785 16 1 10.2857 5.1465 -0.0402 17 1 10.8895 4.1737 2.0972 18 1 9.9262 2.7819 0.3602 19 6 3.5379 5.6047 0.9433 20 6 3.4639 5.3915 2.4566 21 6 3.6418 7.0937 0.6068 22 6 2.3244 4.9576 0.2257 23 6 3.5722 0.7380 -0.0006 24 6 3.6033 -0.6776 -0.0016 25 6 4.6426 -1.6172 -0.0029 26 6 4.3521 -2.9504 -0.0041 27 6 3.0332 -3.3872 0.0017 28 6 1.9946 -2.4836 -0.0028 29 6 2.2653 -1.1179 -0.0005 30 1 -0.3633 0.0993 1.0228 31 1 -0.3633 0.8363 -0.5974 32 1 -0.3633 -0.9353 -0.4255 33 1 4.4274 2.7680 0.9997 34 1 4.4904 2.9551 -0.7751 35 1 5.7340 4.9733 2.1857 36 1 8.7831 4.7342 3.5172 37 1 4.3912 5.7323 2.9173 38 1 2.6267 5.9590 2.8629 39 1 3.3214 4.3316 2.6676 40 1 3.6236 7.2237 -0.4754 41 1 2.8009 7.6262 1.0512 42 1 4.5750 7.4919 1.0049 43 1 2.1916 5.3908 -0.7657 44 1 1.4201 5.0853 0.8207 45 1 4.4303 1.3939 -0.0011 46 1 5.6709 -1.2871 -0.0029 47 1 5.1550 -3.6727 -0.0056 48 1 2.8207 -4.4461 0.0053 49 1 0.9727 -2.8330 -0.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996208392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:03 Heat of formation + Delta-G solvation = 40.994108 kcal Electronic energy + Delta-G solvation = -30384.976614 eV Core-core repulsion = 26505.675002 eV Total energy + Delta-G solvation = -3879.301612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.75230 -41.18288 -39.33953 -37.76390 -35.95004 -35.02037 -33.81417 -32.66020 -31.26745 -30.46695 -29.31124 -28.30236 -27.77627 -27.07188 -25.90473 -24.63941 -23.00942 -22.55391 -21.60019 -20.63200 -20.04447 -19.12859 -17.95394 -17.81507 -17.61240 -17.26564 -16.64946 -16.53429 -16.19677 -15.69870 -15.49099 -15.23032 -15.13966 -14.89469 -14.78328 -14.41750 -14.30311 -14.06866 -13.92036 -13.81621 -13.52934 -13.36289 -13.17240 -12.92170 -12.80698 -12.79327 -12.60339 -12.47439 -12.22425 -12.12627 -12.08506 -11.90935 -11.71735 -11.49884 -11.34667 -11.17850 -10.84830 -10.78387 -9.80020 -9.19936 -9.00928 -8.70624 -7.90388 -5.19180 -0.27581 0.65408 1.03990 1.35110 1.52977 1.53852 1.59662 2.14077 2.16697 2.60259 2.93653 3.21098 3.40042 3.58538 3.66858 3.77896 3.82029 3.83297 4.09453 4.15531 4.24212 4.27820 4.32656 4.37708 4.42111 4.43192 4.47763 4.56250 4.63645 4.65951 4.77069 4.78573 4.80533 4.85520 4.88016 5.01138 5.07495 5.10461 5.12193 5.21141 5.24524 5.43262 5.50172 5.51174 5.58839 5.62644 5.68582 5.70572 6.05412 6.24228 6.29764 6.32964 6.90100 7.39692 8.11692 8.36195 9.32363 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009240 B = 0.004085 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.709248 B = 6851.878207 C = 9446.892049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.459 5.459 3 C 0.002 3.998 4 C 0.592 3.408 5 O -0.573 6.573 6 N -0.593 5.593 7 C 0.080 3.920 8 C 0.173 3.827 9 H 0.072 0.928 10 N -0.720 5.720 11 C -0.241 4.241 12 H 0.079 0.921 13 C -0.065 4.065 14 N -0.966 5.966 15 Si 0.964 3.036 16 H -0.279 1.279 17 H -0.301 1.301 18 H -0.278 1.278 19 C -0.077 4.077 20 C -0.127 4.127 21 C -0.124 4.124 22 C 0.124 3.876 23 C -0.157 4.157 24 C -0.147 4.147 25 C -0.078 4.078 26 C -0.150 4.150 27 C -0.083 4.083 28 C -0.138 4.138 29 C 0.094 3.906 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.381 0.619 36 H 0.250 0.750 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.163 0.837 46 H 0.128 0.872 47 H 0.149 0.851 48 H 0.162 0.838 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -10.495 -6.819 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.140 5.140 3 C -0.108 4.108 4 C 0.382 3.618 5 O -0.455 6.455 6 N -0.324 5.324 7 C -0.046 4.046 8 C 0.062 3.938 9 H 0.089 0.911 10 N -0.361 5.361 11 C -0.373 4.373 12 H 0.097 0.903 13 C -0.258 4.258 14 N -0.616 5.616 15 Si 0.794 3.206 16 H -0.205 1.205 17 H -0.227 1.227 18 H -0.205 1.205 19 C -0.078 4.078 20 C -0.184 4.184 21 C -0.182 4.182 22 C 0.002 3.998 23 C -0.183 4.183 24 C -0.151 4.151 25 C -0.097 4.097 26 C -0.168 4.168 27 C -0.102 4.102 28 C -0.158 4.158 29 C -0.015 4.015 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.217 0.783 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.180 0.820 46 H 0.146 0.854 47 H 0.167 0.833 48 H 0.179 0.821 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.969 -10.369 -6.976 19.501 hybrid contribution 1.241 0.027 0.398 1.303 sum -13.729 -10.342 -6.579 18.404 Atomic orbital electron populations 1.22214 0.74752 1.05416 1.03921 1.43957 1.06932 1.02764 1.60340 1.19691 0.90648 0.87615 1.12804 1.16857 0.84699 0.83278 0.76935 1.90716 1.16121 1.85286 1.53407 1.48096 1.07326 1.06939 1.70049 1.23424 0.77976 1.02081 1.01127 1.21428 0.86979 0.91139 0.94205 0.91055 1.42635 1.02317 1.83548 1.07588 1.19589 0.85470 1.38512 0.93716 0.90272 1.25424 1.01279 1.03411 0.95700 1.69795 1.30800 1.57741 1.03289 0.85352 0.80341 0.78283 0.76626 1.20506 1.22725 1.20452 1.21980 0.93492 0.96811 0.95553 1.21580 1.01757 1.00716 0.94348 1.21616 1.02199 0.92157 1.02178 1.22498 0.97886 0.78163 1.01227 1.21921 0.95910 0.95134 1.05357 1.18516 0.93767 0.93489 1.09341 1.20691 0.98002 0.93009 0.98004 1.21005 0.97930 0.95005 1.02891 1.21309 0.91450 1.00475 0.97004 1.20395 1.01409 0.87759 1.06274 1.18774 0.89606 0.89274 1.03845 0.90918 0.89570 0.87322 0.91824 0.91016 0.78314 0.94138 0.93108 0.90791 0.94452 0.91235 0.90683 0.93285 0.89424 0.90100 0.82020 0.85444 0.83343 0.82074 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.71 10.44 127.77 1.33 3.05 16 2 N -0.46 -13.34 3.22 -526.29 -1.70 -15.03 16 3 C 0.00 0.06 6.79 39.91 0.27 0.33 16 4 C 0.59 20.28 7.82 86.56 0.68 20.96 16 5 O -0.57 -20.87 14.95 -4.18 -0.06 -20.93 16 6 N -0.59 -18.97 3.31 -815.63 -2.70 -21.67 16 7 C 0.08 2.71 4.40 86.73 0.38 3.09 16 8 C 0.17 6.18 2.85 46.18 0.13 6.31 16 9 H 0.07 2.51 8.02 -2.39 -0.02 2.49 16 10 N -0.72 -32.91 5.08 -317.33 -1.61 -34.52 16 11 C -0.24 -12.33 9.98 84.03 0.84 -11.50 16 12 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 13 C -0.07 -3.54 5.50 84.86 0.47 -3.08 16 14 N -0.97 -56.44 13.06 21.65 0.28 -56.16 16 15 Si 0.96 44.13 29.55 68.60 2.03 46.16 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 17 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 C -0.08 -2.27 0.87 -50.71 -0.04 -2.32 16 20 C -0.13 -4.01 7.94 71.98 0.57 -3.44 16 21 C -0.12 -3.15 8.68 71.99 0.62 -2.52 16 22 C 0.12 3.44 5.83 86.93 0.51 3.94 16 23 C -0.16 -5.20 9.29 22.54 0.21 -4.99 16 24 C -0.15 -4.51 6.16 -21.36 -0.13 -4.64 16 25 C -0.08 -2.05 10.06 22.30 0.22 -1.82 16 26 C -0.15 -3.00 9.97 22.02 0.22 -2.78 16 27 C -0.08 -1.45 10.01 22.30 0.22 -1.23 16 28 C -0.14 -2.84 9.90 22.37 0.22 -2.62 16 29 C 0.09 2.62 6.81 39.14 0.27 2.89 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 2.15 6.45 -2.38 -0.02 2.14 16 32 H 0.11 1.66 7.86 -2.39 -0.02 1.64 16 33 H 0.06 2.46 6.62 -2.38 -0.02 2.44 16 34 H 0.07 2.36 7.06 -2.39 -0.02 2.34 16 35 H 0.38 18.86 5.26 -92.71 -0.49 18.37 16 36 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.05 1.86 6.34 -2.39 -0.02 1.84 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.04 1.28 7.91 -2.39 -0.02 1.27 16 40 H 0.07 1.56 8.07 -2.38 -0.02 1.54 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 2.15 7.99 -2.39 -0.02 2.13 16 44 H 0.08 2.20 8.00 -2.39 -0.02 2.18 16 45 H 0.16 5.48 4.22 -2.91 -0.01 5.47 16 46 H 0.13 3.15 8.06 -2.91 -0.02 3.12 16 47 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 48 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 49 H 0.15 2.11 7.91 -2.91 -0.02 2.09 16 Total: -1.00 -66.25 388.37 3.71 -62.54 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: 0.48 Total: 39.98 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 6.99 Total: -0.36 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -5.72 Total: -127.39 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.06 Total: -20.93 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.25 3.71 -62.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996208392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.529 kcal (2) G-P(sol) polarization free energy of solvation -66.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds