Wall clock time and date at job start Wed Apr 1 2020 00:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36542 * 125.07437 * 2 1 4 4 C 1.34550 * 109.90004 * 179.97438 * 3 2 1 5 5 C 1.46002 * 107.00803 * 359.74234 * 4 3 2 6 6 C 1.37804 * 125.07380 * 179.97438 * 2 1 3 7 7 C 1.38979 * 133.37751 * 0.03628 * 6 2 1 8 8 C 1.38057 * 120.27417 * 179.97438 * 7 6 2 9 9 C 1.38272 * 120.87933 * 0.02562 * 8 7 6 10 10 C 1.39316 * 120.20267 * 0.02562 * 9 8 7 11 11 C 1.47371 * 120.34597 * 180.02562 * 10 9 8 12 12 O 1.21620 * 120.00244 * 219.18232 * 11 10 9 13 13 N 1.34776 * 120.00146 * 39.18384 * 11 10 9 14 14 C 1.48149 * 127.84378 * 175.52366 * 13 11 10 15 15 C 1.54386 * 104.72276 * 219.65373 * 14 13 11 16 16 H 1.08994 * 110.34667 * 95.05071 * 15 14 13 17 17 N 1.46500 * 110.33755 * 217.20161 * 15 14 13 18 18 C 1.36939 * 120.00027 * 273.53898 * 17 15 14 19 19 H 1.07992 * 119.99910 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99925 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00082 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00089 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47101 * 90.00293 * 22 20 18 24 24 H 1.48497 * 109.47226 * 209.99855 * 22 20 18 25 25 H 1.48498 * 109.47206 * 330.00174 * 22 20 18 26 26 C 1.54287 * 104.96027 * 336.06840 * 15 14 13 27 27 C 1.53002 * 110.33995 * 118.87343 * 26 15 14 28 28 C 1.52990 * 110.34375 * 241.02846 * 26 15 14 29 29 C 1.48442 * 127.98204 * 355.62059 * 13 11 10 30 30 H 1.09003 * 109.47088 * 270.01589 * 1 2 3 31 31 H 1.08999 * 109.47683 * 30.01660 * 1 2 3 32 32 H 1.08998 * 109.47709 * 150.02344 * 1 2 3 33 33 H 1.08000 * 125.05523 * 0.02562 * 3 2 1 34 34 H 1.07997 * 126.49771 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.86301 * 359.97438 * 7 6 2 36 36 H 1.07993 * 119.55678 * 180.02562 * 8 7 6 37 37 H 1.08007 * 119.89833 * 179.97438 * 9 8 7 38 38 H 1.08997 * 110.40640 * 100.80190 * 14 13 11 39 39 H 1.09004 * 110.40291 * 338.49791 * 14 13 11 40 40 H 0.97004 * 119.99748 * 93.54940 * 17 15 14 41 41 H 0.96998 * 120.00300 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.46963 * 60.00350 * 27 26 15 43 43 H 1.09002 * 109.46928 * 180.02562 * 27 26 15 44 44 H 1.09003 * 109.47083 * 299.99841 * 27 26 15 45 45 H 1.08997 * 109.47608 * 60.00244 * 28 26 15 46 46 H 1.09000 * 109.47091 * 180.02562 * 28 26 15 47 47 H 1.09002 * 109.47454 * 299.99977 * 28 26 15 48 48 H 1.09003 * 110.38773 * 21.56700 * 29 13 11 49 49 H 1.08996 * 110.48866 * 259.21205 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2495 1.1175 0.0000 4 6 3.5481 0.7653 0.0006 5 6 3.5949 -0.6940 0.0072 6 6 2.2568 -1.1278 0.0005 7 6 1.9786 -2.4895 0.0005 8 6 3.0074 -3.4101 0.0006 9 6 4.3276 -2.9989 0.0012 10 6 4.6387 -1.6410 0.0023 11 6 6.0446 -1.1993 0.0024 12 8 6.3803 -0.2387 0.6686 13 7 6.9586 -1.8597 -0.7358 14 6 8.3859 -1.5164 -0.9354 15 6 8.6578 -1.8194 -2.4246 16 1 8.5468 -0.9145 -3.0218 17 7 10.0014 -2.3784 -2.5933 18 6 11.0765 -1.5435 -2.7425 19 1 10.9340 -0.4730 -2.7352 20 6 12.3496 -2.0731 -2.9029 21 7 13.3830 -1.2707 -3.0457 22 14 12.5960 -3.9247 -2.9161 23 1 12.4805 -4.4295 -4.3079 24 1 13.9434 -4.2486 -2.3824 25 1 11.5601 -4.5680 -2.0687 26 6 7.5902 -2.8605 -2.8206 27 6 6.6957 -2.3084 -3.9324 28 6 8.2573 -4.1610 -3.2723 29 6 6.7666 -3.0952 -1.5359 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5134 33 1 1.8825 2.1332 0.0004 34 1 4.3953 1.4350 0.0011 35 1 0.9532 -2.8288 0.0004 36 1 2.7779 -4.4653 0.0001 37 1 5.1200 -3.7328 0.0017 38 1 9.0183 -2.1360 -0.2997 39 1 8.5556 -0.4603 -0.7252 40 1 10.1294 -3.3399 -2.5996 41 1 14.2727 -1.6407 -3.1575 42 1 7.3044 -2.0738 -4.8056 43 1 5.9473 -3.0542 -4.2005 44 1 6.1978 -1.4040 -3.5827 45 1 8.8600 -4.5623 -2.4577 46 1 7.4912 -4.8854 -3.5489 47 1 8.8960 -3.9619 -4.1329 48 1 5.7127 -3.2300 -1.7794 49 1 7.1449 -3.9626 -0.9951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996417248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:29 Heat of formation + Delta-G solvation = 64.232974 kcal Electronic energy + Delta-G solvation = -30175.808690 eV Core-core repulsion = 26297.514791 eV Total energy + Delta-G solvation = -3878.293899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.54816 -39.97089 -38.07722 -36.87682 -34.25587 -33.07963 -33.00216 -31.28335 -30.72403 -29.21454 -27.95616 -27.07928 -26.48970 -26.16562 -24.18645 -23.01068 -21.79360 -21.57607 -20.81858 -19.07842 -18.66888 -17.76311 -17.12190 -16.96998 -16.08548 -15.76429 -15.53396 -15.43181 -15.12208 -14.58236 -14.32758 -13.99966 -13.89664 -13.60268 -13.50590 -13.21491 -13.05655 -12.92122 -12.83525 -12.60794 -12.52916 -12.04838 -11.92632 -11.80196 -11.70887 -11.57054 -11.45465 -11.34473 -11.07875 -11.01875 -10.62429 -10.48318 -10.30948 -9.91132 -9.82683 -9.55359 -9.52577 -9.00921 -8.42789 -8.34930 -7.78530 -7.30745 -5.78503 -3.15317 0.65842 1.38757 2.53409 2.55074 2.96258 3.20040 3.34310 3.36134 3.43721 3.81176 4.37948 4.41503 4.56262 4.60571 4.66391 4.74045 4.77338 4.88402 4.94930 5.03238 5.04985 5.15365 5.27393 5.39351 5.41289 5.52134 5.53938 5.60126 5.64682 5.73222 5.82185 5.83349 5.91589 5.94515 6.04600 6.14265 6.21174 6.24145 6.27785 6.28214 6.40504 6.46129 6.51623 6.56450 6.60208 6.65098 6.88688 6.97358 7.06694 7.85104 7.98487 8.40097 8.42470 9.18128 9.89716 10.08556 11.39616 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.002790 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.038398 B =10034.456563 C =10574.709076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.491 5.491 3 C 0.048 3.952 4 C -0.187 4.187 5 C -0.063 4.063 6 C 0.089 3.911 7 C -0.112 4.112 8 C -0.106 4.106 9 C -0.117 4.117 10 C -0.071 4.071 11 C 0.576 3.424 12 O -0.537 6.537 13 N -0.613 5.613 14 C 0.085 3.915 15 C 0.182 3.818 16 H 0.070 0.930 17 N -0.740 5.740 18 C -0.248 4.248 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.931 5.931 22 Si 0.880 3.120 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.089 4.089 27 C -0.131 4.131 28 C -0.137 4.137 29 C 0.104 3.896 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.367 0.633 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.254 -3.856 3.689 29.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.175 5.175 3 C -0.077 4.077 4 C -0.212 4.212 5 C -0.068 4.068 6 C -0.016 4.016 7 C -0.133 4.133 8 C -0.125 4.125 9 C -0.136 4.136 10 C -0.074 4.074 11 C 0.365 3.635 12 O -0.415 6.415 13 N -0.346 5.346 14 C -0.040 4.040 15 C 0.070 3.930 16 H 0.088 0.912 17 N -0.385 5.385 18 C -0.378 4.378 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.578 5.578 22 Si 0.710 3.290 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.091 4.091 27 C -0.188 4.188 28 C -0.195 4.195 29 C -0.019 4.019 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.187 0.813 34 H 0.170 0.830 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.203 0.797 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -29.302 -3.036 4.070 29.739 hybrid contribution 0.305 -1.303 0.098 1.342 sum -28.998 -4.339 4.168 29.615 Atomic orbital electron populations 1.21908 0.77195 1.04117 1.02881 1.43735 1.05779 1.04253 1.63740 1.21880 0.90374 0.91079 1.04338 1.21830 0.96062 0.92989 1.10274 1.18918 0.90806 0.93486 1.03639 1.18131 0.89828 0.88387 1.05271 1.20078 0.99542 0.89083 1.04565 1.20686 0.91715 0.99069 1.01068 1.21241 0.97028 0.94194 1.01170 1.19300 0.91966 0.92932 1.03251 1.17746 0.84186 0.82386 0.79167 1.90790 1.80771 1.27893 1.42008 1.48967 1.11367 1.27033 1.47210 1.23482 0.78656 1.02022 0.99798 1.21101 0.84566 0.94961 0.92363 0.91162 1.43034 1.02248 1.05276 1.87896 1.19108 0.84984 0.91443 1.42220 0.89080 1.24662 0.95462 0.96939 1.01767 1.69696 0.98634 1.33306 1.56161 0.86638 0.77264 0.87246 0.77865 1.20947 1.21683 1.20289 1.21752 0.95981 0.97029 0.94354 1.21794 0.98689 1.00393 0.97967 1.21767 1.00203 0.95376 1.02162 1.22799 1.00630 0.87108 0.91370 0.91388 0.89898 0.90227 0.81270 0.83010 0.86246 0.85198 0.85094 0.90839 0.90436 0.79668 0.93001 0.91946 0.92976 0.92777 0.92390 0.92945 0.91089 0.89936 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.39 11.02 59.84 0.66 1.05 16 2 N -0.49 -4.61 3.17 -121.82 -0.39 -4.99 16 3 C 0.05 0.47 11.29 -16.76 -0.19 0.28 16 4 C -0.19 -2.48 10.55 -37.78 -0.40 -2.88 16 5 C -0.06 -0.90 6.11 -104.85 -0.64 -1.54 16 6 C 0.09 1.03 6.80 -83.99 -0.57 0.46 16 7 C -0.11 -1.06 9.93 -39.37 -0.39 -1.45 16 8 C -0.11 -1.00 9.99 -39.64 -0.40 -1.39 16 9 C -0.12 -1.35 7.78 -39.17 -0.30 -1.66 16 10 C -0.07 -1.04 5.54 -104.76 -0.58 -1.62 16 11 C 0.58 10.09 7.50 -12.54 -0.09 10.00 16 12 O -0.54 -11.23 16.70 5.26 0.09 -11.14 16 13 N -0.61 -10.08 3.33 -170.34 -0.57 -10.65 16 14 C 0.09 1.61 6.74 -2.41 -0.02 1.60 16 15 C 0.18 3.44 3.33 -66.53 -0.22 3.22 16 16 H 0.07 1.42 7.68 -51.93 -0.40 1.02 16 17 N -0.74 -16.73 4.44 -52.07 -0.23 -16.96 16 18 C -0.25 -6.82 10.45 -15.06 -0.16 -6.97 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 21 N -0.93 -28.97 13.97 55.49 0.78 -28.19 16 22 Si 0.88 21.55 27.74 -169.99 -4.71 16.83 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 26 C -0.09 -1.32 1.03 -153.11 -0.16 -1.48 16 27 C -0.13 -1.73 8.24 37.16 0.31 -1.42 16 28 C -0.14 -1.96 7.10 37.15 0.26 -1.70 16 29 C 0.10 1.39 4.49 -2.24 -0.01 1.38 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.25 8.13 -51.93 -0.42 -0.17 16 32 H 0.08 0.30 8.10 -51.93 -0.42 -0.12 16 33 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.15 2.13 7.93 -52.49 -0.42 1.72 16 35 H 0.12 0.79 8.05 -52.48 -0.42 0.37 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.13 1.36 6.25 -52.48 -0.33 1.03 16 38 H 0.07 1.46 8.06 -51.93 -0.42 1.04 16 39 H 0.08 1.60 7.92 -51.93 -0.41 1.19 16 40 H 0.37 8.01 2.85 -40.82 -0.12 7.90 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.87 6.96 -51.93 -0.36 0.51 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 1.13 7.73 -51.93 -0.40 0.73 16 48 H 0.08 0.95 5.59 -51.93 -0.29 0.66 16 49 H 0.07 0.89 7.81 -51.93 -0.41 0.48 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -34.97 389.76 -9.52 -44.49 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.36 Total: 8.73 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -3.00 Total: -4.00 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.41 Total: -60.79 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.97 -9.52 -44.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996417248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.723 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds