Wall clock time and date at job start Wed Apr 1 2020 00:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36542 * 125.07437 * 2 1 4 4 C 1.34550 * 109.90004 * 179.97438 * 3 2 1 5 5 C 1.46002 * 107.00803 * 359.74234 * 4 3 2 6 6 C 1.37804 * 125.07380 * 179.97438 * 2 1 3 7 7 C 1.38979 * 133.37751 * 0.03628 * 6 2 1 8 8 C 1.38057 * 120.27417 * 179.97438 * 7 6 2 9 9 C 1.38272 * 120.87933 * 0.02562 * 8 7 6 10 10 C 1.39316 * 120.20267 * 0.02562 * 9 8 7 11 11 C 1.47371 * 120.34597 * 180.02562 * 10 9 8 12 12 O 1.21620 * 120.00244 * 219.18232 * 11 10 9 13 13 N 1.34776 * 120.00146 * 39.18384 * 11 10 9 14 14 C 1.48149 * 127.84378 * 175.52366 * 13 11 10 15 15 C 1.54386 * 104.72276 * 219.65373 * 14 13 11 16 16 H 1.08994 * 110.34667 * 95.05071 * 15 14 13 17 17 N 1.46500 * 110.33755 * 217.20161 * 15 14 13 18 18 C 1.36939 * 120.00027 * 273.53898 * 17 15 14 19 19 H 1.07992 * 119.99910 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99925 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00082 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00089 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47101 * 90.00293 * 22 20 18 24 24 H 1.48497 * 109.47226 * 209.99855 * 22 20 18 25 25 H 1.48498 * 109.47206 * 330.00174 * 22 20 18 26 26 C 1.54287 * 104.96027 * 336.06840 * 15 14 13 27 27 C 1.53002 * 110.33995 * 118.87343 * 26 15 14 28 28 C 1.52990 * 110.34375 * 241.02846 * 26 15 14 29 29 C 1.48442 * 127.98204 * 355.62059 * 13 11 10 30 30 H 1.09003 * 109.47088 * 270.01589 * 1 2 3 31 31 H 1.08999 * 109.47683 * 30.01660 * 1 2 3 32 32 H 1.08998 * 109.47709 * 150.02344 * 1 2 3 33 33 H 1.08000 * 125.05523 * 0.02562 * 3 2 1 34 34 H 1.07997 * 126.49771 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.86301 * 359.97438 * 7 6 2 36 36 H 1.07993 * 119.55678 * 180.02562 * 8 7 6 37 37 H 1.08007 * 119.89833 * 179.97438 * 9 8 7 38 38 H 1.08997 * 110.40640 * 100.80190 * 14 13 11 39 39 H 1.09004 * 110.40291 * 338.49791 * 14 13 11 40 40 H 0.97004 * 119.99748 * 93.54940 * 17 15 14 41 41 H 0.96998 * 120.00300 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.46963 * 60.00350 * 27 26 15 43 43 H 1.09002 * 109.46928 * 180.02562 * 27 26 15 44 44 H 1.09003 * 109.47083 * 299.99841 * 27 26 15 45 45 H 1.08997 * 109.47608 * 60.00244 * 28 26 15 46 46 H 1.09000 * 109.47091 * 180.02562 * 28 26 15 47 47 H 1.09002 * 109.47454 * 299.99977 * 28 26 15 48 48 H 1.09003 * 110.38773 * 21.56700 * 29 13 11 49 49 H 1.08996 * 110.48866 * 259.21205 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2495 1.1175 0.0000 4 6 3.5481 0.7653 0.0006 5 6 3.5949 -0.6940 0.0072 6 6 2.2568 -1.1278 0.0005 7 6 1.9786 -2.4895 0.0005 8 6 3.0074 -3.4101 0.0006 9 6 4.3276 -2.9989 0.0012 10 6 4.6387 -1.6410 0.0023 11 6 6.0446 -1.1993 0.0024 12 8 6.3803 -0.2387 0.6686 13 7 6.9586 -1.8597 -0.7358 14 6 8.3859 -1.5164 -0.9354 15 6 8.6578 -1.8194 -2.4246 16 1 8.5468 -0.9145 -3.0218 17 7 10.0014 -2.3784 -2.5933 18 6 11.0765 -1.5435 -2.7425 19 1 10.9340 -0.4730 -2.7352 20 6 12.3496 -2.0731 -2.9029 21 7 13.3830 -1.2707 -3.0457 22 14 12.5960 -3.9247 -2.9161 23 1 12.4805 -4.4295 -4.3079 24 1 13.9434 -4.2486 -2.3824 25 1 11.5601 -4.5680 -2.0687 26 6 7.5902 -2.8605 -2.8206 27 6 6.6957 -2.3084 -3.9324 28 6 8.2573 -4.1610 -3.2723 29 6 6.7666 -3.0952 -1.5359 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5134 33 1 1.8825 2.1332 0.0004 34 1 4.3953 1.4350 0.0011 35 1 0.9532 -2.8288 0.0004 36 1 2.7779 -4.4653 0.0001 37 1 5.1200 -3.7328 0.0017 38 1 9.0183 -2.1360 -0.2997 39 1 8.5556 -0.4603 -0.7252 40 1 10.1294 -3.3399 -2.5996 41 1 14.2727 -1.6407 -3.1575 42 1 7.3044 -2.0738 -4.8056 43 1 5.9473 -3.0542 -4.2005 44 1 6.1978 -1.4040 -3.5827 45 1 8.8600 -4.5623 -2.4577 46 1 7.4912 -4.8854 -3.5489 47 1 8.8960 -3.9619 -4.1329 48 1 5.7127 -3.2300 -1.7794 49 1 7.1449 -3.9626 -0.9951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996417248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:28 Heat of formation + Delta-G solvation = 42.233303 kcal Electronic energy + Delta-G solvation = -30176.762667 eV Core-core repulsion = 26297.514791 eV Total energy + Delta-G solvation = -3879.247876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.36996 -41.27278 -39.41622 -37.77968 -36.04012 -34.50261 -33.78822 -33.12067 -31.80272 -30.03888 -29.42840 -28.26890 -27.40016 -27.04360 -25.78713 -24.31197 -22.98867 -22.60163 -21.86698 -20.42354 -20.10171 -19.40422 -18.24309 -17.83137 -17.21499 -17.06226 -16.48979 -16.30603 -16.18228 -16.11939 -15.86742 -15.36111 -15.09307 -14.80536 -14.62672 -14.54475 -14.15896 -13.98972 -13.71450 -13.61378 -13.54686 -13.29996 -13.13652 -13.07135 -12.94719 -12.69965 -12.65487 -12.54302 -12.41753 -12.17712 -12.16898 -11.97101 -11.87096 -11.60141 -11.33893 -11.03744 -10.92921 -10.59130 -9.84049 -9.33114 -9.18172 -8.60096 -8.02835 -5.38272 -0.22821 0.59142 1.36412 1.42052 1.48580 1.58024 1.76440 1.92758 1.97191 2.48064 2.89065 3.26084 3.38590 3.47427 3.64657 3.82618 3.88775 3.93488 3.97381 3.99880 4.22396 4.25518 4.30485 4.34402 4.45799 4.49482 4.52217 4.53885 4.64896 4.74345 4.76754 4.81095 4.85085 4.88042 4.92926 4.98663 5.04107 5.05670 5.07442 5.12799 5.29735 5.39776 5.43486 5.47429 5.50335 5.69578 5.74000 5.76806 6.17612 6.20648 6.40132 6.54655 7.05810 7.08720 7.79135 8.01987 9.18836 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.002790 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.038398 B =10034.456563 C =10574.709076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.486 5.486 3 C 0.077 3.923 4 C -0.247 4.247 5 C -0.095 4.095 6 C 0.075 3.925 7 C -0.095 4.095 8 C -0.105 4.105 9 C -0.108 4.108 10 C -0.109 4.109 11 C 0.571 3.429 12 O -0.590 6.590 13 N -0.611 5.611 14 C 0.092 3.908 15 C 0.177 3.823 16 H 0.046 0.954 17 N -0.736 5.736 18 C -0.237 4.237 19 H 0.048 0.952 20 C -0.062 4.062 21 N -0.984 5.984 22 Si 0.953 3.047 23 H -0.271 1.271 24 H -0.298 1.298 25 H -0.246 1.246 26 C -0.081 4.081 27 C -0.126 4.126 28 C -0.137 4.137 29 C 0.108 3.892 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.206 0.794 34 H 0.122 0.878 35 H 0.158 0.842 36 H 0.171 0.829 37 H 0.144 0.856 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.376 0.624 41 H 0.258 0.742 42 H 0.051 0.949 43 H 0.088 0.912 44 H 0.041 0.959 45 H 0.052 0.948 46 H 0.095 0.905 47 H 0.052 0.948 48 H 0.112 0.888 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.360 -8.209 3.344 35.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.169 5.169 3 C -0.050 4.050 4 C -0.272 4.272 5 C -0.101 4.101 6 C -0.031 4.031 7 C -0.115 4.115 8 C -0.123 4.123 9 C -0.127 4.127 10 C -0.113 4.113 11 C 0.363 3.637 12 O -0.472 6.472 13 N -0.343 5.343 14 C -0.034 4.034 15 C 0.066 3.934 16 H 0.064 0.936 17 N -0.382 5.382 18 C -0.368 4.368 19 H 0.066 0.934 20 C -0.254 4.254 21 N -0.634 5.634 22 Si 0.779 3.221 23 H -0.196 1.196 24 H -0.225 1.225 25 H -0.170 1.170 26 C -0.083 4.083 27 C -0.184 4.184 28 C -0.195 4.195 29 C -0.014 4.014 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.223 0.777 34 H 0.140 0.860 35 H 0.176 0.824 36 H 0.188 0.812 37 H 0.162 0.838 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.214 0.786 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.113 0.887 47 H 0.071 0.929 48 H 0.130 0.870 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -34.506 -7.438 3.716 35.494 hybrid contribution 1.731 0.221 0.236 1.761 sum -32.776 -7.216 3.952 33.793 Atomic orbital electron populations 1.22289 0.74034 1.06114 1.04347 1.44077 1.07512 1.03281 1.62000 1.22309 0.89260 0.92783 1.00638 1.21772 0.97114 0.93236 1.15037 1.19239 0.92441 0.93773 1.04604 1.18419 0.88905 0.89924 1.05895 1.20590 1.01586 0.87860 1.01461 1.21127 0.90328 1.01080 0.99814 1.21477 0.98857 0.92689 0.99702 1.19155 0.89627 0.94753 1.07743 1.18458 0.85643 0.81512 0.78118 1.90741 1.81811 1.30292 1.44323 1.48974 1.09777 1.28098 1.47420 1.23097 0.80930 0.99723 0.99654 1.21189 0.84527 0.95839 0.91822 0.93595 1.42902 1.02314 1.05090 1.87880 1.19005 0.86727 0.90324 1.40703 0.93375 1.25544 0.94911 1.02753 1.02175 1.69902 0.99172 1.35989 1.58351 0.85463 0.77401 0.80405 0.78847 1.19616 1.22485 1.16981 1.21727 0.94695 0.96093 0.95747 1.21765 0.98902 1.00917 0.96777 1.21776 1.01101 0.95424 1.01158 1.23035 1.02229 0.86015 0.90107 0.90099 0.87801 0.88510 0.77710 0.86047 0.82400 0.81162 0.83827 0.91734 0.93949 0.78632 0.93301 0.92978 0.89310 0.94021 0.92918 0.88650 0.92857 0.87027 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 11.02 127.77 1.41 1.79 16 2 N -0.49 -7.76 3.17 -539.32 -1.71 -9.48 16 3 C 0.08 1.44 11.29 83.12 0.94 2.38 16 4 C -0.25 -7.06 10.55 23.44 0.25 -6.81 16 5 C -0.09 -2.75 6.11 -20.01 -0.12 -2.87 16 6 C 0.07 1.55 6.80 38.98 0.27 1.81 16 7 C -0.09 -1.35 9.93 22.40 0.22 -1.12 16 8 C -0.10 -1.45 9.99 22.23 0.22 -1.23 16 9 C -0.11 -2.20 7.78 22.54 0.18 -2.03 16 10 C -0.11 -3.23 5.54 -19.95 -0.11 -3.34 16 11 C 0.57 21.32 7.50 86.65 0.65 21.97 16 12 O -0.59 -27.37 16.70 -4.09 -0.07 -27.44 16 13 N -0.61 -20.80 3.33 -811.09 -2.70 -23.50 16 14 C 0.09 3.75 6.74 86.53 0.58 4.33 16 15 C 0.18 6.99 3.33 45.90 0.15 7.14 16 16 H 0.05 2.02 7.68 -2.39 -0.02 2.00 16 17 N -0.74 -34.02 4.44 -318.66 -1.42 -35.44 16 18 C -0.24 -13.71 10.45 84.03 0.88 -12.83 16 19 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 20 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 21 N -0.98 -64.14 13.97 21.65 0.30 -63.84 16 22 Si 0.95 44.75 27.74 68.60 1.90 46.65 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.25 -10.15 6.52 99.48 0.65 -9.50 16 26 C -0.08 -2.27 1.03 -51.28 -0.05 -2.32 16 27 C -0.13 -3.12 8.24 71.98 0.59 -2.53 16 28 C -0.14 -3.44 7.10 71.98 0.51 -2.93 16 29 C 0.11 2.65 4.49 86.48 0.39 3.03 16 30 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.10 0.15 8.13 -2.39 -0.02 0.13 16 32 H 0.10 0.22 8.10 -2.39 -0.02 0.20 16 33 H 0.21 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.12 4.03 7.93 -2.91 -0.02 4.01 16 35 H 0.16 1.03 8.05 -2.91 -0.02 1.00 16 36 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 37 H 0.14 2.45 6.25 -2.91 -0.02 2.43 16 38 H 0.06 2.72 8.06 -2.39 -0.02 2.70 16 39 H 0.04 1.97 7.92 -2.39 -0.02 1.95 16 40 H 0.38 16.02 2.85 -92.71 -0.26 15.75 16 41 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 1.39 6.96 -2.39 -0.02 1.37 16 46 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.05 1.55 7.73 -2.39 -0.02 1.53 16 48 H 0.11 2.16 5.59 -2.39 -0.01 2.14 16 49 H 0.09 1.95 7.81 -2.39 -0.02 1.93 16 Total: -1.00 -86.33 389.76 4.36 -81.97 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.63 Total: 29.87 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 7.42 Total: 1.19 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -5.53 Total: -132.25 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.07 Total: -27.44 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.65 kcal Total: -86.33 4.36 -81.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996417248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.204 kcal (2) G-P(sol) polarization free energy of solvation -86.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds