Wall clock time and date at job start Wed Apr 1 2020 00:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34242 * 126.50062 * 2 1 4 4 N 1.36830 * 109.92940 * 179.97438 * 3 2 1 5 5 C 1.46493 * 125.06265 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47294 * 265.02388 * 5 4 3 7 7 O 1.21291 * 119.99601 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00281 * 179.97438 * 6 5 4 9 9 C 1.46919 * 120.63234 * 0.02562 * 8 6 5 10 10 C 1.53195 * 108.77845 * 233.62780 * 9 8 6 11 11 C 1.53039 * 109.31257 * 305.36660 * 10 9 8 12 12 C 1.53046 * 109.52798 * 61.36716 * 11 10 9 13 13 H 1.08998 * 109.49692 * 58.57850 * 12 11 10 14 14 N 1.46493 * 109.49651 * 178.67721 * 12 11 10 15 15 C 1.36937 * 120.00289 * 204.99988 * 14 12 11 16 16 H 1.08002 * 119.99791 * 0.02562 * 15 14 12 17 17 C 1.38814 * 120.00357 * 179.97438 * 15 14 12 18 18 N 1.31619 * 119.99894 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 119.99772 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47457 * 89.99861 * 19 17 15 21 21 H 1.48510 * 109.46786 * 209.99701 * 19 17 15 22 22 H 1.48497 * 109.47261 * 329.99425 * 19 17 15 23 23 C 1.46931 * 120.63154 * 180.02562 * 8 6 5 24 24 C 1.37685 * 109.87415 * 0.26411 * 4 3 2 25 25 C 1.39123 * 133.50431 * 180.51210 * 24 4 3 26 26 C 1.37749 * 119.78347 * 179.57958 * 25 24 4 27 27 C 1.38833 * 120.66192 * 359.67186 * 26 25 24 28 28 C 1.36625 * 120.52934 * 0.02562 * 27 26 25 29 29 C 1.39631 * 119.76821 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.46995 * 90.02251 * 1 2 3 31 31 H 1.08993 * 109.47185 * 210.02315 * 1 2 3 32 32 H 1.09000 * 109.47323 * 330.02890 * 1 2 3 33 33 H 1.08003 * 125.03515 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47336 * 145.02074 * 5 4 3 35 35 H 1.08995 * 109.47406 * 25.02288 * 5 4 3 36 36 H 1.08997 * 109.59005 * 113.84256 * 9 8 6 37 37 H 1.09000 * 109.58835 * 353.41592 * 9 8 6 38 38 H 1.08997 * 109.50026 * 185.40903 * 10 9 8 39 39 H 1.09006 * 109.51801 * 65.33221 * 10 9 8 40 40 H 1.09002 * 109.46050 * 181.38302 * 11 10 9 41 41 H 1.09004 * 109.46034 * 301.35518 * 11 10 9 42 42 H 0.97001 * 120.00113 * 24.99839 * 14 12 11 43 43 H 0.97000 * 119.99878 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.58959 * 246.15740 * 23 8 6 45 45 H 1.09003 * 109.58181 * 6.44223 * 23 8 6 46 46 H 1.08002 * 120.10972 * 359.27575 * 25 24 4 47 47 H 1.07994 * 119.67121 * 179.69869 * 26 25 24 48 48 H 1.08003 * 119.73806 * 180.02562 * 27 26 25 49 49 H 1.08009 * 120.11616 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.0791 0.0000 4 7 3.6170 0.6889 0.0006 5 6 4.7656 1.5981 0.0013 6 6 5.2367 1.8135 -1.4139 7 8 4.6691 1.2614 -2.3326 8 7 6.2886 2.6197 -1.6586 9 6 6.9867 3.2949 -0.5563 10 6 7.0369 4.7974 -0.8511 11 6 7.6687 5.0224 -2.2268 12 6 6.8112 4.3478 -3.3001 13 1 5.8018 4.7580 -3.2702 14 7 7.3995 4.5903 -4.6196 15 6 6.6100 4.5561 -5.7380 16 1 5.5536 4.3508 -5.6472 17 6 7.1673 4.7865 -6.9883 18 7 6.4085 4.7531 -8.0633 19 14 8.9943 5.1423 -7.1453 20 1 9.7334 3.8670 -7.3256 21 1 9.2284 6.0204 -8.3199 22 1 9.4736 5.8226 -5.9154 23 6 6.7592 2.8399 -3.0330 24 6 3.6964 -0.6857 -0.0050 25 6 4.7589 -1.5837 0.0021 26 6 4.5098 -2.9385 0.0019 27 6 3.2072 -3.4188 0.0015 28 6 2.1488 -2.5548 0.0009 29 6 2.3784 -1.1775 0.0010 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3634 0.8902 0.5134 33 1 1.9635 2.1035 0.0004 34 1 5.5729 1.1634 0.5907 35 1 4.4724 2.5537 0.4359 36 1 8.0011 2.9050 -0.4728 37 1 6.4492 3.1233 0.3763 38 1 7.6351 5.2978 -0.0897 39 1 6.0255 5.2038 -0.8444 40 1 7.7280 6.0919 -2.4286 41 1 8.6710 4.5941 -2.2405 42 1 8.3482 4.7751 -4.7012 43 1 6.7979 4.9144 -8.9369 44 1 7.7550 2.4129 -3.1512 45 1 6.0727 2.3659 -3.7346 46 1 5.7758 -1.2199 0.0027 47 1 5.3359 -3.6340 0.0024 48 1 3.0290 -4.4841 0.0018 49 1 1.1382 -2.9358 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000442305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:04 Heat of formation + Delta-G solvation = 45.832144 kcal Electronic energy + Delta-G solvation = -29560.174195 eV Core-core repulsion = 25681.082376 eV Total energy + Delta-G solvation = -3879.091819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.53630 -39.95143 -37.62147 -36.90657 -34.74690 -33.83703 -32.45412 -31.43554 -30.62929 -29.94560 -29.10926 -28.27238 -25.94277 -24.68854 -23.81536 -22.72377 -21.86308 -21.62488 -20.47755 -19.59878 -19.05079 -17.63687 -17.47316 -16.91877 -16.65660 -15.60666 -15.48359 -15.39570 -14.76773 -14.62828 -14.39339 -14.24436 -14.02262 -13.80659 -13.62589 -13.27120 -13.19337 -13.10855 -12.84924 -12.70130 -12.67050 -12.49842 -12.18577 -12.14762 -11.75317 -11.55760 -11.43877 -11.31421 -10.99981 -10.84316 -10.82085 -10.75041 -10.34462 -9.98722 -9.86088 -9.63116 -9.47859 -9.17998 -8.51600 -8.18153 -7.57922 -7.35187 -5.81188 -3.19327 1.10772 1.60161 2.42267 2.56219 2.70605 3.12242 3.32613 3.35313 3.41480 3.90034 4.31461 4.44399 4.53617 4.56683 4.64350 4.69447 4.74270 4.86644 4.92300 5.02777 5.06642 5.22485 5.25277 5.28443 5.34694 5.37740 5.48639 5.61103 5.65565 5.67282 5.70053 5.71753 5.78614 5.83857 5.91444 5.93917 5.97097 6.12727 6.13484 6.28815 6.45524 6.51291 6.58229 6.63749 6.72109 6.78187 6.80244 7.16906 7.20570 7.45241 7.93649 8.18198 8.37230 9.13894 9.85385 10.03330 11.36721 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.002621 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.455015 B =10681.495311 C =11110.635567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.175 4.175 3 C 0.060 3.940 4 N -0.467 5.467 5 C 0.094 3.906 6 C 0.487 3.513 7 O -0.515 6.515 8 N -0.605 5.605 9 C 0.105 3.895 10 C -0.130 4.130 11 C -0.130 4.130 12 C 0.174 3.826 13 H 0.059 0.941 14 N -0.742 5.742 15 C -0.251 4.251 16 H 0.091 0.909 17 C 0.008 3.992 18 N -0.929 5.929 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.093 3.907 24 C 0.112 3.888 25 C -0.125 4.125 26 C -0.102 4.102 27 C -0.151 4.151 28 C -0.071 4.071 29 C -0.102 4.102 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.165 0.835 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 -8.444 25.321 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.181 4.181 3 C -0.064 4.064 4 N -0.150 5.150 5 C -0.032 4.032 6 C 0.272 3.728 7 O -0.390 6.390 8 N -0.341 5.341 9 C -0.018 4.018 10 C -0.168 4.168 11 C -0.168 4.168 12 C 0.063 3.937 13 H 0.077 0.923 14 N -0.384 5.384 15 C -0.380 4.380 16 H 0.109 0.891 17 C -0.188 4.188 18 N -0.576 5.576 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.031 4.031 24 C 0.007 3.993 25 C -0.146 4.146 26 C -0.121 4.121 27 C -0.170 4.170 28 C -0.090 4.090 29 C -0.107 4.107 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.183 0.817 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.196 0.804 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.132 0.868 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.980 -8.500 24.613 26.342 hybrid contribution 1.617 0.443 -0.424 1.730 sum -2.363 -8.058 24.188 25.604 Atomic orbital electron populations 1.20065 0.89480 1.01859 1.01729 1.20221 0.95139 0.90736 1.12051 1.21541 0.81499 0.99221 1.04177 1.43317 1.04982 1.03691 1.62972 1.21643 0.89614 0.95733 0.96243 1.20860 0.80766 0.79954 0.91203 1.90811 1.55077 1.47599 1.45475 1.48275 1.30946 1.45961 1.08876 1.21780 0.97669 0.93365 0.89032 1.21876 1.02018 0.94949 0.98003 1.21871 0.99366 1.01643 0.93961 1.20450 0.96754 0.91449 0.85021 0.92315 1.42716 1.07768 1.85774 1.02132 1.19084 0.93439 1.41641 0.83862 0.89115 1.24692 0.97340 1.01492 0.95301 1.69707 1.34510 1.55669 0.97742 0.86555 0.86781 0.78078 0.77104 1.21013 1.21643 1.20308 1.22743 0.99855 1.00091 0.80426 1.18165 0.95505 0.82547 1.03105 1.19988 0.96436 0.92329 1.05827 1.20753 0.96965 0.94026 1.00344 1.20576 0.92471 0.99315 1.04618 1.20211 0.98922 0.90860 0.98973 1.19062 0.91821 0.93211 1.06557 0.91845 0.92044 0.92033 0.81725 0.87063 0.86420 0.91067 0.90503 0.90740 0.91335 0.91213 0.92076 0.80435 0.92937 0.92094 0.88686 0.86809 0.85991 0.86262 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.41 36.01 0.37 -0.32 16 2 C -0.17 -2.17 6.32 -102.71 -0.65 -2.82 16 3 C 0.06 0.72 11.19 -16.73 -0.19 0.53 16 4 N -0.47 -5.95 2.27 -115.71 -0.26 -6.21 16 5 C 0.09 0.95 4.83 -5.20 -0.03 0.93 16 6 C 0.49 7.21 7.77 -10.99 -0.09 7.13 16 7 O -0.52 -10.49 15.83 5.55 0.09 -10.40 16 8 N -0.61 -8.28 2.97 -172.75 -0.51 -8.80 16 9 C 0.10 0.95 6.34 -3.71 -0.02 0.92 16 10 C -0.13 -1.25 6.08 -26.61 -0.16 -1.42 16 11 C -0.13 -1.77 5.35 -26.69 -0.14 -1.91 16 12 C 0.17 3.20 2.92 -67.80 -0.20 3.00 16 13 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 14 N -0.74 -17.07 4.93 -53.29 -0.26 -17.33 16 15 C -0.25 -7.06 10.41 -15.06 -0.16 -7.21 16 16 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 17 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 18 N -0.93 -29.37 13.97 55.49 0.78 -28.60 16 19 Si 0.88 21.83 27.74 -169.99 -4.71 17.12 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 23 C 0.09 1.66 6.02 -3.69 -0.02 1.63 16 24 C 0.11 1.57 6.80 -83.99 -0.57 1.00 16 25 C -0.13 -1.59 10.00 -39.43 -0.39 -1.99 16 26 C -0.10 -1.15 10.01 -39.54 -0.40 -1.55 16 27 C -0.15 -1.66 9.97 -39.94 -0.40 -2.05 16 28 C -0.07 -0.85 10.05 -39.64 -0.40 -1.25 16 29 C -0.10 -1.40 6.35 -105.14 -0.67 -2.07 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.11 0.85 7.94 -51.93 -0.41 0.43 16 35 H 0.12 0.82 7.67 -51.93 -0.40 0.42 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.36 8.10 5.66 -40.82 -0.23 7.86 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.09 2.09 7.00 -51.93 -0.36 1.73 16 46 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 49 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 396.99 15.07 5.98 5.98 Total: -1.00 -36.66 396.99 -10.75 -47.41 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.64 Total: 8.12 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -4.20 Total: -7.29 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.26 Total: -60.94 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.66 -10.75 -47.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000442305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.245 kcal (2) G-P(sol) polarization free energy of solvation -36.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds