Wall clock time and date at job start Wed Apr 1 2020 00:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34242 * 126.50062 * 2 1 4 4 N 1.36830 * 109.92940 * 179.97438 * 3 2 1 5 5 C 1.46493 * 125.06265 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47294 * 265.02388 * 5 4 3 7 7 O 1.21291 * 119.99601 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00281 * 179.97438 * 6 5 4 9 9 C 1.46919 * 120.63234 * 0.02562 * 8 6 5 10 10 C 1.53195 * 108.77845 * 233.62780 * 9 8 6 11 11 C 1.53039 * 109.31257 * 305.36660 * 10 9 8 12 12 C 1.53046 * 109.52798 * 61.36716 * 11 10 9 13 13 H 1.08998 * 109.49692 * 58.57850 * 12 11 10 14 14 N 1.46493 * 109.49651 * 178.67721 * 12 11 10 15 15 C 1.36937 * 120.00289 * 204.99988 * 14 12 11 16 16 H 1.08002 * 119.99791 * 0.02562 * 15 14 12 17 17 C 1.38814 * 120.00357 * 179.97438 * 15 14 12 18 18 N 1.31619 * 119.99894 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 119.99772 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47457 * 89.99861 * 19 17 15 21 21 H 1.48510 * 109.46786 * 209.99701 * 19 17 15 22 22 H 1.48497 * 109.47261 * 329.99425 * 19 17 15 23 23 C 1.46931 * 120.63154 * 180.02562 * 8 6 5 24 24 C 1.37685 * 109.87415 * 0.26411 * 4 3 2 25 25 C 1.39123 * 133.50431 * 180.51210 * 24 4 3 26 26 C 1.37749 * 119.78347 * 179.57958 * 25 24 4 27 27 C 1.38833 * 120.66192 * 359.67186 * 26 25 24 28 28 C 1.36625 * 120.52934 * 0.02562 * 27 26 25 29 29 C 1.39631 * 119.76821 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.46995 * 90.02251 * 1 2 3 31 31 H 1.08993 * 109.47185 * 210.02315 * 1 2 3 32 32 H 1.09000 * 109.47323 * 330.02890 * 1 2 3 33 33 H 1.08003 * 125.03515 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47336 * 145.02074 * 5 4 3 35 35 H 1.08995 * 109.47406 * 25.02288 * 5 4 3 36 36 H 1.08997 * 109.59005 * 113.84256 * 9 8 6 37 37 H 1.09000 * 109.58835 * 353.41592 * 9 8 6 38 38 H 1.08997 * 109.50026 * 185.40903 * 10 9 8 39 39 H 1.09006 * 109.51801 * 65.33221 * 10 9 8 40 40 H 1.09002 * 109.46050 * 181.38302 * 11 10 9 41 41 H 1.09004 * 109.46034 * 301.35518 * 11 10 9 42 42 H 0.97001 * 120.00113 * 24.99839 * 14 12 11 43 43 H 0.97000 * 119.99878 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.58959 * 246.15740 * 23 8 6 45 45 H 1.09003 * 109.58181 * 6.44223 * 23 8 6 46 46 H 1.08002 * 120.10972 * 359.27575 * 25 24 4 47 47 H 1.07994 * 119.67121 * 179.69869 * 26 25 24 48 48 H 1.08003 * 119.73806 * 180.02562 * 27 26 25 49 49 H 1.08009 * 120.11616 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.0791 0.0000 4 7 3.6170 0.6889 0.0006 5 6 4.7656 1.5981 0.0013 6 6 5.2367 1.8135 -1.4139 7 8 4.6691 1.2614 -2.3326 8 7 6.2886 2.6197 -1.6586 9 6 6.9867 3.2949 -0.5563 10 6 7.0369 4.7974 -0.8511 11 6 7.6687 5.0224 -2.2268 12 6 6.8112 4.3478 -3.3001 13 1 5.8018 4.7580 -3.2702 14 7 7.3995 4.5903 -4.6196 15 6 6.6100 4.5561 -5.7380 16 1 5.5536 4.3508 -5.6472 17 6 7.1673 4.7865 -6.9883 18 7 6.4085 4.7531 -8.0633 19 14 8.9943 5.1423 -7.1453 20 1 9.7334 3.8670 -7.3256 21 1 9.2284 6.0204 -8.3199 22 1 9.4736 5.8226 -5.9154 23 6 6.7592 2.8399 -3.0330 24 6 3.6964 -0.6857 -0.0050 25 6 4.7589 -1.5837 0.0021 26 6 4.5098 -2.9385 0.0019 27 6 3.2072 -3.4188 0.0015 28 6 2.1488 -2.5548 0.0009 29 6 2.3784 -1.1775 0.0010 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3634 0.8902 0.5134 33 1 1.9635 2.1035 0.0004 34 1 5.5729 1.1634 0.5907 35 1 4.4724 2.5537 0.4359 36 1 8.0011 2.9050 -0.4728 37 1 6.4492 3.1233 0.3763 38 1 7.6351 5.2978 -0.0897 39 1 6.0255 5.2038 -0.8444 40 1 7.7280 6.0919 -2.4286 41 1 8.6710 4.5941 -2.2405 42 1 8.3482 4.7751 -4.7012 43 1 6.7979 4.9144 -8.9369 44 1 7.7550 2.4129 -3.1512 45 1 6.0727 2.3659 -3.7346 46 1 5.7758 -1.2199 0.0027 47 1 5.3359 -3.6340 0.0024 48 1 3.0290 -4.4841 0.0018 49 1 1.1382 -2.9358 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000442305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:03 Heat of formation + Delta-G solvation = 22.683770 kcal Electronic energy + Delta-G solvation = -29561.177984 eV Core-core repulsion = 25681.082376 eV Total energy + Delta-G solvation = -3880.095608 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.43179 -41.08909 -38.86229 -37.83594 -36.38413 -34.75933 -34.03099 -32.94740 -31.64694 -30.85881 -30.40734 -29.28670 -26.95518 -25.81296 -25.44154 -23.62514 -23.16068 -22.60114 -21.82237 -20.51618 -20.19549 -19.56658 -18.54267 -17.89766 -17.51614 -16.91319 -16.53789 -16.46007 -16.30988 -15.80439 -15.71192 -15.38148 -15.01801 -14.91325 -14.76311 -14.64269 -14.32519 -14.11605 -13.95692 -13.88020 -13.62083 -13.60455 -13.33262 -13.04877 -13.00594 -12.93367 -12.63126 -12.44941 -12.23451 -12.11873 -11.96208 -11.89197 -11.81869 -11.68454 -11.40992 -11.20213 -10.97650 -10.39870 -9.89028 -9.30851 -9.09018 -8.45977 -8.08464 -5.45082 0.21377 0.69059 1.33164 1.38956 1.45315 1.46651 1.50533 1.85483 2.09868 2.43703 2.99374 3.22175 3.37939 3.50620 3.71246 3.74388 3.89050 3.93810 4.00136 4.03743 4.10552 4.11974 4.24132 4.27334 4.32618 4.45007 4.47377 4.57806 4.65240 4.69708 4.82524 4.85188 4.87063 4.89374 4.93683 4.99091 5.01426 5.13158 5.19218 5.31031 5.34137 5.42529 5.43667 5.58743 5.69624 5.70496 5.86526 5.90154 6.15298 6.26562 6.30799 6.44414 7.00408 7.07095 7.73445 7.95134 9.13453 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.002621 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.455015 B =10681.495311 C =11110.635567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.194 4.194 3 C 0.047 3.953 4 N -0.474 5.474 5 C 0.101 3.899 6 C 0.481 3.519 7 O -0.586 6.586 8 N -0.601 5.601 9 C 0.097 3.903 10 C -0.123 4.123 11 C -0.123 4.123 12 C 0.171 3.829 13 H 0.029 0.971 14 N -0.744 5.744 15 C -0.239 4.239 16 H 0.041 0.959 17 C -0.066 4.066 18 N -0.985 5.985 19 Si 0.965 3.035 20 H -0.279 1.279 21 H -0.294 1.294 22 H -0.241 1.241 23 C 0.106 3.894 24 C 0.085 3.915 25 C -0.144 4.144 26 C -0.107 4.107 27 C -0.155 4.155 28 C -0.085 4.085 29 C -0.133 4.133 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.189 0.811 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.371 0.629 43 H 0.259 0.741 44 H 0.067 0.933 45 H 0.036 0.964 46 H 0.124 0.876 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 -7.903 29.359 30.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.201 4.201 3 C -0.077 4.077 4 N -0.156 5.156 5 C -0.024 4.024 6 C 0.269 3.731 7 O -0.465 6.465 8 N -0.334 5.334 9 C -0.024 4.024 10 C -0.161 4.161 11 C -0.161 4.161 12 C 0.062 3.938 13 H 0.047 0.953 14 N -0.388 5.388 15 C -0.370 4.370 16 H 0.059 0.941 17 C -0.257 4.257 18 N -0.635 5.635 19 Si 0.790 3.210 20 H -0.205 1.205 21 H -0.221 1.221 22 H -0.165 1.165 23 C -0.020 4.020 24 C -0.020 4.020 25 C -0.164 4.164 26 C -0.126 4.126 27 C -0.174 4.174 28 C -0.103 4.103 29 C -0.138 4.138 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.206 0.794 34 H 0.163 0.837 35 H 0.177 0.823 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.205 0.795 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.141 0.859 47 H 0.164 0.836 48 H 0.163 0.837 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.463 -7.940 28.768 29.879 hybrid contribution 0.729 0.205 -1.664 1.828 sum -0.734 -7.735 27.104 28.195 Atomic orbital electron populations 1.20097 0.87822 1.03208 1.01669 1.20672 0.96553 0.90657 1.12189 1.22050 0.81548 1.00339 1.03772 1.43515 1.05745 1.03612 1.62754 1.21908 0.90052 0.97631 0.92816 1.21829 0.79908 0.78683 0.92705 1.90787 1.57299 1.50376 1.48057 1.48326 1.30940 1.45943 1.08222 1.22259 0.99030 0.92401 0.88682 1.21895 1.02230 0.95737 0.96239 1.21817 0.99218 1.00775 0.94271 1.20647 0.96342 0.92132 0.84727 0.95313 1.42654 1.07662 1.86004 1.02435 1.18933 0.91973 1.40098 0.86028 0.94054 1.25656 1.03354 1.02068 0.94622 1.69923 1.37282 1.57884 0.98430 0.85281 0.79443 0.78072 0.78156 1.20484 1.22109 1.16528 1.22159 0.98560 0.98866 0.82400 1.18539 0.96085 0.83545 1.03877 1.20266 0.96751 0.92949 1.06456 1.21142 0.98005 0.94092 0.99370 1.20948 0.92198 1.00613 1.03626 1.20536 1.00198 0.90618 0.98955 1.19527 0.92471 0.94367 1.07398 0.92497 0.91222 0.90185 0.79353 0.83665 0.82295 0.88961 0.85980 0.86492 0.91737 0.91443 0.90522 0.79521 0.93193 0.91498 0.94528 0.85854 0.83591 0.83683 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.41 71.24 0.74 -0.56 16 2 C -0.19 -4.83 6.32 -18.63 -0.12 -4.95 16 3 C 0.05 1.10 11.19 83.00 0.93 2.03 16 4 N -0.47 -11.63 2.27 -520.01 -1.18 -12.81 16 5 C 0.10 1.77 4.83 85.63 0.41 2.18 16 6 C 0.48 14.03 7.77 87.66 0.68 14.71 16 7 O -0.59 -25.27 15.83 -3.06 -0.05 -25.32 16 8 N -0.60 -15.62 2.97 -818.85 -2.43 -18.05 16 9 C 0.10 1.28 6.34 86.36 0.55 1.83 16 10 C -0.12 -1.79 6.08 30.67 0.19 -1.60 16 11 C -0.12 -2.98 5.35 30.62 0.16 -2.81 16 12 C 0.17 6.35 2.92 45.08 0.13 6.48 16 13 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 14 N -0.74 -34.70 4.93 -322.53 -1.59 -36.29 16 15 C -0.24 -14.19 10.41 84.03 0.88 -13.31 16 16 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 17 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 18 N -0.99 -65.36 13.97 21.65 0.30 -65.06 16 19 Si 0.96 45.52 27.74 68.60 1.90 47.43 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.24 -9.87 6.52 99.48 0.65 -9.22 16 23 C 0.11 3.88 6.02 86.37 0.52 4.40 16 24 C 0.09 2.38 6.80 39.03 0.27 2.64 16 25 C -0.14 -3.59 10.00 22.37 0.22 -3.37 16 26 C -0.11 -2.32 10.01 22.30 0.22 -2.10 16 27 C -0.15 -3.27 9.97 22.03 0.22 -3.05 16 28 C -0.08 -2.01 10.05 22.23 0.22 -1.79 16 29 C -0.13 -3.70 6.35 -20.20 -0.13 -3.82 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.15 1.57 7.94 -2.39 -0.02 1.55 16 35 H 0.16 1.45 7.67 -2.39 -0.02 1.43 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.12 0.60 5.93 -2.39 -0.01 0.58 16 38 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.37 15.99 5.66 -92.71 -0.52 15.46 16 43 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 44 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 45 H 0.04 1.75 7.00 -2.39 -0.02 1.74 16 46 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 47 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 48 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 49 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -90.55 396.99 3.88 -86.66 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.36 Total: 30.04 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 6.57 Total: -6.60 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -4.90 Total: -132.20 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.32 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.43 kcal Total: -90.55 3.88 -86.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000442305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.345 kcal (2) G-P(sol) polarization free energy of solvation -90.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds