Wall clock time and date at job start Wed Apr 1 2020 00:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35737 * 120.33569 * 2 1 4 4 C 1.40819 * 119.72459 * 180.02562 * 3 2 1 5 5 C 1.34543 * 120.57954 * 0.02562 * 4 3 2 6 6 N 1.37439 * 120.74276 * 359.95719 * 5 4 3 7 7 C 1.35127 * 131.27913 * 180.02562 * 6 5 4 8 8 C 1.38064 * 108.76643 * 180.02562 * 7 6 5 9 9 C 1.47492 * 126.37170 * 180.02562 * 8 7 6 10 10 O 1.21595 * 119.99993 * 187.27360 * 9 8 7 11 11 N 1.34777 * 120.00213 * 7.27261 * 9 8 7 12 12 C 1.46500 * 119.99754 * 5.64644 * 11 9 8 13 13 C 1.46500 * 120.00054 * 185.64244 * 11 9 8 14 14 C 1.53044 * 109.46031 * 239.99791 * 13 11 9 15 15 C 1.53194 * 109.31158 * 178.61519 * 14 13 11 16 16 N 1.46928 * 108.89259 * 54.56473 * 15 14 13 17 17 C 1.36934 * 120.62738 * 126.46090 * 16 15 14 18 18 H 1.07998 * 120.00306 * 330.72730 * 17 16 15 19 19 C 1.38814 * 120.00131 * 150.73227 * 17 16 15 20 20 N 1.31627 * 119.99626 * 341.46908 * 19 17 16 21 21 Si 1.86798 * 120.00587 * 161.47066 * 19 17 16 22 22 H 1.48511 * 109.46836 * 59.99873 * 21 19 17 23 23 H 1.48496 * 109.47608 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47113 * 300.00256 * 21 19 17 25 25 C 1.46963 * 118.71768 * 306.64543 * 16 15 14 26 26 C 1.53042 * 109.45879 * 119.93574 * 13 11 9 27 27 C 1.41195 * 107.25415 * 0.26605 * 8 7 6 28 28 C 1.37939 * 119.80859 * 0.04155 * 6 5 4 29 29 H 1.08992 * 109.47226 * 269.97652 * 1 2 3 30 30 H 1.09002 * 109.47032 * 29.97812 * 1 2 3 31 31 H 1.09002 * 109.46855 * 149.97265 * 1 2 3 32 32 H 1.08003 * 120.13675 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.71235 * 180.02562 * 4 3 2 34 34 H 1.08007 * 119.62877 * 180.02562 * 5 4 3 35 35 H 1.07998 * 125.62149 * 0.02742 * 7 6 5 36 36 H 1.09005 * 109.46938 * 275.86302 * 12 11 9 37 37 H 1.08992 * 109.47795 * 35.86474 * 12 11 9 38 38 H 1.09004 * 109.46950 * 155.86940 * 12 11 9 39 39 H 1.08995 * 109.45872 * 359.97438 * 13 11 9 40 40 H 1.09001 * 109.49198 * 58.67150 * 14 13 11 41 41 H 1.08997 * 109.49945 * 298.56745 * 14 13 11 42 42 H 1.08999 * 109.58559 * 174.42207 * 15 14 13 43 43 H 1.09005 * 109.58551 * 294.71001 * 15 14 13 44 44 H 0.97000 * 119.99464 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.46136 * 293.56513 * 25 16 15 46 46 H 1.08998 * 109.71225 * 173.28511 * 25 16 15 47 47 H 1.09005 * 109.49922 * 301.33703 * 26 13 11 48 48 H 1.08998 * 109.49950 * 61.42927 * 26 13 11 49 49 H 1.08000 * 126.56730 * 179.71351 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6007 1.1565 -0.0005 5 6 4.2728 -0.0090 -0.0016 6 7 3.6004 -1.2077 -0.0013 7 6 4.0500 -2.4820 -0.0016 8 6 2.9649 -3.3358 -0.0016 9 6 3.0120 -4.8100 -0.0014 10 8 1.9873 -5.4510 -0.1347 11 7 4.1906 -5.4466 0.1465 12 6 5.4065 -4.6803 0.4305 13 6 4.2560 -6.9050 0.0233 14 6 4.7738 -7.5046 1.3327 15 6 4.8080 -9.0314 1.2122 16 7 5.5964 -9.3975 0.0276 17 6 6.6438 -10.2736 0.1302 18 1 7.2017 -10.3427 1.0523 19 6 6.9887 -11.0728 -0.9511 20 7 6.1260 -11.2696 -1.9256 21 14 8.6769 -11.8691 -1.0234 22 1 8.8550 -12.7592 0.1520 23 1 8.7951 -12.6668 -2.2702 24 1 9.7225 -10.8147 -1.0087 25 6 5.2415 -8.8023 -1.2684 26 6 5.2024 -7.2782 -1.1200 27 6 1.8020 -2.5351 -0.0074 28 6 2.2211 -1.2203 -0.0007 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6603 2.1113 0.0004 33 1 4.1460 2.0887 -0.0001 34 1 5.3528 -0.0026 -0.0016 35 1 5.0871 -2.7831 -0.0019 36 1 5.8282 -4.3086 -0.5034 37 1 5.1626 -3.8390 1.0792 38 1 6.1335 -5.3231 0.9269 39 1 3.2607 -7.2966 -0.1869 40 1 4.1120 -7.2190 2.1503 41 1 5.7791 -7.1327 1.5307 42 1 5.2681 -9.4580 2.1035 43 1 3.7922 -9.4125 1.1071 44 1 6.3668 -11.8284 -2.6810 45 1 4.2612 -9.1647 -1.5782 46 1 5.9858 -9.0778 -2.0156 47 1 4.8458 -6.8314 -2.0481 48 1 6.2036 -6.9083 -0.8989 49 1 0.7801 -2.8847 -0.0133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006284762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:32 Heat of formation + Delta-G solvation = 78.555313 kcal Electronic energy + Delta-G solvation = -29529.118867 eV Core-core repulsion = 25651.446031 eV Total energy + Delta-G solvation = -3877.672836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.50525 -39.74529 -37.44960 -36.77580 -35.09847 -34.36690 -32.56601 -30.82447 -30.11072 -29.65908 -28.58880 -27.29908 -26.94425 -25.29065 -23.69772 -22.21406 -22.15579 -22.00064 -21.07565 -19.21815 -18.94437 -17.56392 -17.34980 -16.74750 -16.08601 -15.90837 -15.70052 -15.09454 -14.99528 -14.71677 -14.54660 -13.98511 -13.69747 -13.60991 -13.57157 -13.35226 -13.07700 -12.96740 -12.92186 -12.66848 -12.55512 -12.29442 -12.01459 -11.82837 -11.53812 -11.43159 -11.33400 -11.11661 -10.77925 -10.70945 -10.38426 -10.35160 -10.19074 -10.07310 -9.77853 -9.66437 -9.46388 -8.74776 -8.49566 -8.24922 -7.58264 -6.65097 -5.78089 -3.20580 0.46965 1.09139 2.03985 2.42067 3.16851 3.24518 3.39098 3.44953 3.45808 3.60554 4.15121 4.34902 4.48614 4.50714 4.61614 4.66096 4.83352 5.03823 5.13953 5.16334 5.23644 5.26870 5.34451 5.35994 5.44010 5.50692 5.57268 5.63704 5.65738 5.68016 5.73275 5.81648 5.92260 6.06852 6.08497 6.11516 6.29232 6.36493 6.51357 6.54401 6.61361 6.62927 6.65465 6.81022 6.97070 6.99472 7.02033 7.34506 7.59869 7.69524 7.81423 8.44423 8.46865 9.22080 9.85602 10.44080 11.30896 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.026911 B = 0.002202 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.221466 B =12714.037982 C =13197.180078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.037 4.037 3 C -0.146 4.146 4 C -0.131 4.131 5 C 0.033 3.967 6 N -0.339 5.339 7 C -0.029 4.029 8 C -0.162 4.162 9 C 0.581 3.419 10 O -0.540 6.540 11 N -0.603 5.603 12 C 0.063 3.937 13 C 0.146 3.854 14 C -0.138 4.138 15 C 0.148 3.852 16 N -0.591 5.591 17 C -0.256 4.256 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.899 5.899 21 Si 0.901 3.099 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.175 3.825 26 C -0.144 4.144 27 C -0.133 4.133 28 C 0.023 3.977 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.196 0.804 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.021 0.979 44 H 0.255 0.745 45 H 0.022 0.978 46 H 0.085 0.915 47 H 0.051 0.949 48 H 0.057 0.943 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 27.714 4.398 28.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.038 4.038 3 C -0.166 4.166 4 C -0.151 4.151 5 C -0.085 4.085 6 N -0.002 5.002 7 C -0.161 4.161 8 C -0.169 4.169 9 C 0.370 3.630 10 O -0.418 6.418 11 N -0.334 5.334 12 C -0.080 4.080 13 C 0.045 3.955 14 C -0.178 4.178 15 C 0.021 3.979 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.543 5.543 21 Si 0.731 3.269 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.049 3.951 26 C -0.185 4.185 27 C -0.158 4.158 28 C -0.081 4.081 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.178 0.822 35 H 0.213 0.787 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.103 0.897 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.227 27.386 4.174 28.191 hybrid contribution 1.166 -0.270 -0.144 1.205 sum -4.061 27.116 4.030 27.713 Atomic orbital electron populations 1.20748 0.89639 1.03503 1.02977 1.19386 0.96484 0.90141 0.97786 1.20788 0.93683 0.97824 1.04330 1.20679 0.94816 0.97034 1.02554 1.21643 0.98379 0.83215 1.05273 1.41401 1.07138 1.05488 1.46191 1.23414 1.00592 0.80237 1.11899 1.19723 0.93257 0.92946 1.11005 1.17474 0.83328 0.85715 0.76456 1.90760 1.33180 1.67394 1.50502 1.47943 1.07192 1.08130 1.70184 1.22262 0.88225 0.97073 1.00463 1.21201 1.01449 0.76635 0.96238 1.22374 1.00285 0.99304 0.95841 1.20866 0.94922 0.90633 0.91502 1.44059 1.34494 1.49934 1.02947 1.19096 1.05397 1.14129 0.99899 0.91804 1.25078 0.98196 0.97289 0.98921 1.70053 1.32895 1.40052 1.11310 0.86397 0.84567 0.78953 0.77008 1.20857 1.21665 1.21068 1.20705 0.99579 0.85834 0.88991 1.22555 0.98257 1.01363 0.96287 1.21078 0.98773 0.88785 1.07114 1.18652 0.81977 0.94905 1.12537 0.90435 0.90907 0.90700 0.85034 0.83794 0.82173 0.78748 0.92511 0.90580 0.90113 0.88557 0.92828 0.92136 0.92492 0.96153 0.93546 0.96036 0.89701 0.93059 0.92459 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.92 36.01 0.36 -0.39 16 2 C -0.04 -0.33 5.90 -104.32 -0.62 -0.95 16 3 C -0.15 -1.06 9.72 -39.50 -0.38 -1.44 16 4 C -0.13 -0.84 9.97 -39.91 -0.40 -1.24 16 5 C 0.03 0.25 10.89 -16.34 -0.18 0.07 16 6 N -0.34 -3.54 2.92 -60.42 -0.18 -3.72 16 7 C -0.03 -0.32 9.51 -16.16 -0.15 -0.47 16 8 C -0.16 -2.27 5.95 -105.07 -0.63 -2.90 16 9 C 0.58 9.86 7.66 -12.49 -0.10 9.77 16 10 O -0.54 -11.15 16.27 5.28 0.09 -11.06 16 11 N -0.60 -9.39 2.76 -175.13 -0.48 -9.87 16 12 C 0.06 0.71 7.71 59.85 0.46 1.17 16 13 C 0.15 2.68 2.47 -67.89 -0.17 2.51 16 14 C -0.14 -2.47 5.32 -26.61 -0.14 -2.61 16 15 C 0.15 3.16 6.51 -3.71 -0.02 3.13 16 16 N -0.59 -14.86 2.99 -172.29 -0.52 -15.37 16 17 C -0.26 -6.99 9.56 -15.06 -0.14 -7.13 16 18 H 0.06 1.71 7.90 -52.49 -0.41 1.29 16 19 C 0.00 0.12 4.86 -17.43 -0.08 0.03 16 20 N -0.90 -26.28 11.40 55.49 0.63 -25.64 16 21 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.18 4.22 5.30 -3.69 -0.02 4.20 16 26 C -0.14 -2.80 5.34 -26.61 -0.14 -2.94 16 27 C -0.13 -1.77 10.28 -38.54 -0.40 -2.16 16 28 C 0.02 0.27 6.60 -84.01 -0.55 -0.29 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.07 0.53 7.69 -51.93 -0.40 0.13 16 32 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.20 1.62 4.35 -52.49 -0.23 1.39 16 36 H 0.06 0.56 7.37 -51.93 -0.38 0.17 16 37 H 0.08 0.71 5.31 -51.93 -0.28 0.43 16 38 H 0.08 0.92 6.47 -51.93 -0.34 0.59 16 39 H 0.10 2.01 6.91 -51.93 -0.36 1.66 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.04 6.72 -51.93 -0.35 0.69 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.08 2.26 6.23 -51.93 -0.32 1.93 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.06 1.08 7.72 -51.93 -0.40 0.67 16 49 H 0.15 1.95 7.93 -52.49 -0.42 1.53 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -34.13 384.52 -10.23 -44.37 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.23 Total: 0.58 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -3.31 Total: -1.63 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.54 Total: -54.60 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.13 -10.23 -44.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006284762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.920 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds