Wall clock time and date at job start Wed Apr 1 2020 00:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35737 * 120.33569 * 2 1 4 4 C 1.40819 * 119.72459 * 180.02562 * 3 2 1 5 5 C 1.34543 * 120.57954 * 0.02562 * 4 3 2 6 6 N 1.37439 * 120.74276 * 359.95719 * 5 4 3 7 7 C 1.35127 * 131.27913 * 180.02562 * 6 5 4 8 8 C 1.38064 * 108.76643 * 180.02562 * 7 6 5 9 9 C 1.47492 * 126.37170 * 180.02562 * 8 7 6 10 10 O 1.21595 * 119.99993 * 187.27360 * 9 8 7 11 11 N 1.34777 * 120.00213 * 7.27261 * 9 8 7 12 12 C 1.46500 * 119.99754 * 5.64644 * 11 9 8 13 13 C 1.46500 * 120.00054 * 185.64244 * 11 9 8 14 14 C 1.53044 * 109.46031 * 239.99791 * 13 11 9 15 15 C 1.53194 * 109.31158 * 178.61519 * 14 13 11 16 16 N 1.46928 * 108.89259 * 54.56473 * 15 14 13 17 17 C 1.36934 * 120.62738 * 126.46090 * 16 15 14 18 18 H 1.07998 * 120.00306 * 330.72730 * 17 16 15 19 19 C 1.38814 * 120.00131 * 150.73227 * 17 16 15 20 20 N 1.31627 * 119.99626 * 341.46908 * 19 17 16 21 21 Si 1.86798 * 120.00587 * 161.47066 * 19 17 16 22 22 H 1.48511 * 109.46836 * 59.99873 * 21 19 17 23 23 H 1.48496 * 109.47608 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47113 * 300.00256 * 21 19 17 25 25 C 1.46963 * 118.71768 * 306.64543 * 16 15 14 26 26 C 1.53042 * 109.45879 * 119.93574 * 13 11 9 27 27 C 1.41195 * 107.25415 * 0.26605 * 8 7 6 28 28 C 1.37939 * 119.80859 * 0.04155 * 6 5 4 29 29 H 1.08992 * 109.47226 * 269.97652 * 1 2 3 30 30 H 1.09002 * 109.47032 * 29.97812 * 1 2 3 31 31 H 1.09002 * 109.46855 * 149.97265 * 1 2 3 32 32 H 1.08003 * 120.13675 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.71235 * 180.02562 * 4 3 2 34 34 H 1.08007 * 119.62877 * 180.02562 * 5 4 3 35 35 H 1.07998 * 125.62149 * 0.02742 * 7 6 5 36 36 H 1.09005 * 109.46938 * 275.86302 * 12 11 9 37 37 H 1.08992 * 109.47795 * 35.86474 * 12 11 9 38 38 H 1.09004 * 109.46950 * 155.86940 * 12 11 9 39 39 H 1.08995 * 109.45872 * 359.97438 * 13 11 9 40 40 H 1.09001 * 109.49198 * 58.67150 * 14 13 11 41 41 H 1.08997 * 109.49945 * 298.56745 * 14 13 11 42 42 H 1.08999 * 109.58559 * 174.42207 * 15 14 13 43 43 H 1.09005 * 109.58551 * 294.71001 * 15 14 13 44 44 H 0.97000 * 119.99464 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.46136 * 293.56513 * 25 16 15 46 46 H 1.08998 * 109.71225 * 173.28511 * 25 16 15 47 47 H 1.09005 * 109.49922 * 301.33703 * 26 13 11 48 48 H 1.08998 * 109.49950 * 61.42927 * 26 13 11 49 49 H 1.08000 * 126.56730 * 179.71351 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6007 1.1565 -0.0005 5 6 4.2728 -0.0090 -0.0016 6 7 3.6004 -1.2077 -0.0013 7 6 4.0500 -2.4820 -0.0016 8 6 2.9649 -3.3358 -0.0016 9 6 3.0120 -4.8100 -0.0014 10 8 1.9873 -5.4510 -0.1347 11 7 4.1906 -5.4466 0.1465 12 6 5.4065 -4.6803 0.4305 13 6 4.2560 -6.9050 0.0233 14 6 4.7738 -7.5046 1.3327 15 6 4.8080 -9.0314 1.2122 16 7 5.5964 -9.3975 0.0276 17 6 6.6438 -10.2736 0.1302 18 1 7.2017 -10.3427 1.0523 19 6 6.9887 -11.0728 -0.9511 20 7 6.1260 -11.2696 -1.9256 21 14 8.6769 -11.8691 -1.0234 22 1 8.8550 -12.7592 0.1520 23 1 8.7951 -12.6668 -2.2702 24 1 9.7225 -10.8147 -1.0087 25 6 5.2415 -8.8023 -1.2684 26 6 5.2024 -7.2782 -1.1200 27 6 1.8020 -2.5351 -0.0074 28 6 2.2211 -1.2203 -0.0007 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6603 2.1113 0.0004 33 1 4.1460 2.0887 -0.0001 34 1 5.3528 -0.0026 -0.0016 35 1 5.0871 -2.7831 -0.0019 36 1 5.8282 -4.3086 -0.5034 37 1 5.1626 -3.8390 1.0792 38 1 6.1335 -5.3231 0.9269 39 1 3.2607 -7.2966 -0.1869 40 1 4.1120 -7.2190 2.1503 41 1 5.7791 -7.1327 1.5307 42 1 5.2681 -9.4580 2.1035 43 1 3.7922 -9.4125 1.1071 44 1 6.3668 -11.8284 -2.6810 45 1 4.2612 -9.1647 -1.5782 46 1 5.9858 -9.0778 -2.0156 47 1 4.8458 -6.8314 -2.0481 48 1 6.2036 -6.9083 -0.8989 49 1 0.7801 -2.8847 -0.0133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006284762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:31 Heat of formation + Delta-G solvation = 59.727653 kcal Electronic energy + Delta-G solvation = -29529.935296 eV Core-core repulsion = 25651.446031 eV Total energy + Delta-G solvation = -3878.489265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.28350 -41.04046 -38.98976 -37.58629 -36.60240 -35.02837 -34.34181 -32.24100 -31.59659 -30.99648 -29.57131 -28.13335 -27.73169 -27.03478 -24.97484 -23.88861 -23.25706 -22.94558 -22.14256 -20.63516 -20.26771 -18.74799 -18.34509 -18.21384 -17.24824 -16.81969 -16.69868 -16.61790 -16.00565 -15.98452 -15.64210 -15.38775 -15.16411 -14.85868 -14.65101 -14.38895 -14.32944 -14.11908 -14.05553 -13.94122 -13.76629 -13.34100 -13.17730 -13.03791 -12.67535 -12.56713 -12.54070 -12.43866 -12.28240 -12.11098 -12.03163 -12.01171 -11.87686 -11.49199 -11.32931 -11.09779 -10.97073 -10.55226 -9.70629 -9.48436 -8.70771 -8.29597 -7.87968 -5.34510 -0.19204 0.37618 1.07028 1.48951 1.51016 1.58395 1.67512 2.05303 2.43473 2.52400 2.55786 3.27654 3.45271 3.63205 3.67697 3.79917 3.92714 3.99469 4.04620 4.10369 4.13856 4.20662 4.30731 4.41385 4.45414 4.49033 4.58506 4.63792 4.69027 4.75191 4.77925 4.83483 4.85514 4.87694 4.92159 5.04154 5.06611 5.13557 5.13957 5.25111 5.28148 5.33871 5.42890 5.47917 5.61107 5.63524 5.66345 5.67728 5.90070 6.31738 6.38548 6.44893 7.13212 7.18228 7.82914 8.38115 9.19556 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.026911 B = 0.002202 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.221466 B =12714.037982 C =13197.180078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.070 4.070 3 C -0.130 4.130 4 C -0.127 4.127 5 C 0.020 3.980 6 N -0.340 5.340 7 C -0.016 4.016 8 C -0.192 4.192 9 C 0.576 3.424 10 O -0.594 6.594 11 N -0.599 5.599 12 C 0.054 3.946 13 C 0.155 3.845 14 C -0.120 4.120 15 C 0.143 3.857 16 N -0.607 5.607 17 C -0.264 4.264 18 H 0.071 0.929 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.275 1.275 23 H -0.297 1.297 24 H -0.273 1.273 25 C 0.183 3.817 26 C -0.125 4.125 27 C -0.171 4.171 28 C 0.023 3.977 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.160 0.840 33 H 0.183 0.817 34 H 0.197 0.803 35 H 0.226 0.774 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.004 0.996 44 H 0.250 0.750 45 H -0.012 1.012 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 31.994 5.549 32.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.071 4.071 3 C -0.151 4.151 4 C -0.146 4.146 5 C -0.097 4.097 6 N -0.003 5.003 7 C -0.149 4.149 8 C -0.200 4.200 9 C 0.368 3.632 10 O -0.477 6.477 11 N -0.330 5.330 12 C -0.087 4.087 13 C 0.052 3.948 14 C -0.160 4.160 15 C 0.017 3.983 16 N -0.330 5.330 17 C -0.394 4.394 18 H 0.089 0.911 19 C -0.247 4.247 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.201 1.201 23 H -0.224 1.224 24 H -0.199 1.199 25 C 0.056 3.944 26 C -0.165 4.165 27 C -0.195 4.195 28 C -0.082 4.082 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.178 0.822 33 H 0.200 0.800 34 H 0.214 0.786 35 H 0.242 0.758 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.022 0.978 44 H 0.059 0.941 45 H 0.006 0.994 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.424 31.716 5.362 32.258 hybrid contribution 0.245 -1.416 -0.477 1.514 sum -2.179 30.301 4.885 30.769 Atomic orbital electron populations 1.20761 0.88741 1.03802 1.03353 1.19672 0.97497 0.89952 0.99944 1.21285 0.94552 0.98151 1.01070 1.21243 0.94610 0.98293 1.00493 1.22422 1.00237 0.82162 1.04835 1.41632 1.06877 1.06347 1.45458 1.23621 1.00773 0.80029 1.10428 1.19484 0.94950 0.91321 1.14198 1.17972 0.82820 0.87019 0.75419 1.90719 1.35094 1.68736 1.53114 1.47862 1.08483 1.06928 1.69685 1.22613 0.86317 0.97508 1.02285 1.20810 0.99166 0.78818 0.96025 1.22162 1.01621 0.96293 0.95938 1.20997 0.93546 0.93252 0.90469 1.44311 1.34723 1.50035 1.03967 1.19480 1.05826 1.14004 1.00112 0.91105 1.25908 1.01669 0.98322 0.98760 1.70226 1.34803 1.41251 1.11956 0.85305 0.80167 0.78083 0.76660 1.20051 1.22360 1.19910 1.20472 0.96680 0.88934 0.88267 1.22271 0.99467 0.97574 0.97168 1.21050 0.98332 0.90188 1.09973 1.18866 0.83004 0.94905 1.11455 0.90039 0.88833 0.92169 0.82227 0.79983 0.78564 0.75837 0.90239 0.88101 0.89567 0.92077 0.91361 0.90287 0.91664 0.97816 0.94092 0.99426 0.92468 0.92586 0.90777 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.92 71.24 0.71 -0.68 16 2 C -0.07 -1.14 5.90 -19.67 -0.12 -1.26 16 3 C -0.13 -1.38 9.72 22.32 0.22 -1.17 16 4 C -0.13 -0.99 9.97 22.05 0.22 -0.77 16 5 C 0.02 0.21 10.89 82.97 0.90 1.11 16 6 N -0.34 -6.24 2.92 -345.06 -1.01 -7.24 16 7 C -0.02 -0.31 9.51 84.14 0.80 0.49 16 8 C -0.19 -5.47 5.95 -20.15 -0.12 -5.59 16 9 C 0.58 20.25 7.66 86.68 0.66 20.91 16 10 O -0.59 -26.46 16.27 -4.02 -0.07 -26.52 16 11 N -0.60 -18.35 2.76 -826.24 -2.28 -20.63 16 12 C 0.05 1.05 7.71 127.77 0.98 2.04 16 13 C 0.16 5.75 2.47 45.02 0.11 5.87 16 14 C -0.12 -4.22 5.32 30.67 0.16 -4.06 16 15 C 0.14 6.22 6.51 86.36 0.56 6.78 16 16 N -0.61 -31.12 2.99 -699.00 -2.09 -33.21 16 17 C -0.26 -14.53 9.56 84.03 0.80 -13.73 16 18 H 0.07 3.73 7.90 -2.91 -0.02 3.71 16 19 C -0.05 -2.87 4.86 84.86 0.41 -2.46 16 20 N -0.94 -56.64 11.40 21.65 0.25 -56.40 16 21 Si 0.97 44.68 29.59 68.60 2.03 46.71 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 C 0.18 9.19 5.30 86.35 0.46 9.65 16 26 C -0.12 -4.88 5.34 30.67 0.16 -4.72 16 27 C -0.17 -4.81 10.28 22.94 0.24 -4.58 16 28 C 0.02 0.52 6.60 38.90 0.26 0.77 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 31 H 0.06 0.92 7.69 -2.39 -0.02 0.90 16 32 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.18 0.05 8.06 -2.91 -0.02 0.02 16 34 H 0.20 0.51 8.06 -2.91 -0.02 0.49 16 35 H 0.23 2.80 4.35 -2.91 -0.01 2.79 16 36 H 0.08 1.24 7.37 -2.38 -0.02 1.22 16 37 H 0.10 1.51 5.31 -2.39 -0.01 1.49 16 38 H 0.09 1.64 6.47 -2.39 -0.02 1.62 16 39 H 0.06 2.72 6.91 -2.39 -0.02 2.71 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.08 2.51 6.72 -2.39 -0.02 2.50 16 42 H 0.06 2.68 7.93 -2.39 -0.02 2.66 16 43 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 45 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 46 H 0.06 3.17 6.23 -2.39 -0.01 3.16 16 47 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 48 H 0.07 2.66 7.72 -2.39 -0.02 2.64 16 49 H 0.14 4.03 7.93 -2.91 -0.02 4.00 16 Total: -1.00 -79.95 384.52 5.21 -74.74 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.96 Total: 13.94 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 7.43 Total: 8.62 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -5.13 Total: -117.48 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.07 Total: -26.52 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -79.95 5.21 -74.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006284762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.467 kcal (2) G-P(sol) polarization free energy of solvation -79.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds