Wall clock time and date at job start Wed Apr 1 2020 00:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35740 * 120.33418 * 2 1 4 4 C 1.40829 * 119.71905 * 180.02562 * 3 2 1 5 5 C 1.34536 * 120.58678 * 0.02562 * 4 3 2 6 6 N 1.37440 * 120.74446 * 0.02562 * 5 4 3 7 7 C 1.35123 * 131.29457 * 180.29760 * 6 5 4 8 8 C 1.38059 * 108.77489 * 180.14989 * 7 6 5 9 9 C 1.47499 * 126.37339 * 179.82668 * 8 7 6 10 10 O 1.21597 * 119.99783 * 179.68707 * 9 8 7 11 11 N 1.34777 * 119.99934 * 359.69187 * 9 8 7 12 12 C 1.46502 * 119.99609 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46916 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.49931 * 54.99651 * 13 12 11 15 15 C 1.53034 * 109.49887 * 175.06295 * 13 12 11 16 16 C 1.53035 * 109.53963 * 181.31496 * 15 13 12 17 17 C 1.53200 * 109.31473 * 298.63584 * 16 15 13 18 18 N 1.46924 * 108.77129 * 54.63422 * 17 16 15 19 19 C 1.36946 * 120.62772 * 126.43474 * 18 17 16 20 20 H 1.08006 * 119.99575 * 207.66445 * 19 18 17 21 21 C 1.38799 * 119.99931 * 27.66993 * 19 18 17 22 22 N 1.31621 * 120.00404 * 17.35295 * 21 19 18 23 23 Si 1.86803 * 119.99817 * 197.35014 * 21 19 18 24 24 H 1.48506 * 109.47040 * 60.00208 * 23 21 19 25 25 H 1.48503 * 109.47299 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47542 * 299.99932 * 23 21 19 27 27 C 1.46935 * 118.76765 * 306.41483 * 18 17 16 28 28 C 1.41196 * 107.25264 * 359.56694 * 8 7 6 29 29 C 1.37952 * 119.80376 * 359.97438 * 6 5 4 30 30 H 1.09000 * 109.46534 * 269.96508 * 1 2 3 31 31 H 1.08996 * 109.47146 * 29.96954 * 1 2 3 32 32 H 1.08999 * 109.47365 * 149.97265 * 1 2 3 33 33 H 1.08000 * 120.13993 * 0.02562 * 3 2 1 34 34 H 1.07995 * 119.70492 * 180.02562 * 4 3 2 35 35 H 1.08001 * 119.62925 * 179.97438 * 5 4 3 36 36 H 1.08008 * 125.61405 * 359.97040 * 7 6 5 37 37 H 0.96996 * 119.99937 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.47042 * 299.99625 * 12 11 9 39 39 H 1.08998 * 109.47263 * 60.00070 * 12 11 9 40 40 H 1.09003 * 109.46310 * 301.33792 * 15 13 12 41 41 H 1.09001 * 109.45973 * 61.31085 * 15 13 12 42 42 H 1.09004 * 109.50095 * 58.58649 * 16 15 13 43 43 H 1.09005 * 109.50363 * 178.68491 * 16 15 13 44 44 H 1.09000 * 109.58657 * 174.41869 * 17 16 15 45 45 H 1.08992 * 109.58507 * 294.84974 * 17 16 15 46 46 H 0.97003 * 120.00220 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.55816 * 293.78727 * 27 18 17 48 48 H 1.08998 * 109.61953 * 173.36317 * 27 18 17 49 49 H 1.08002 * 126.56421 * 180.30441 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1564 -0.0005 5 6 4.2729 -0.0090 -0.0016 6 7 3.6006 -1.2078 -0.0027 7 6 4.0499 -2.4821 0.0015 8 6 2.9649 -3.3358 -0.0055 9 6 3.0118 -4.8100 -0.0076 10 8 1.9786 -5.4512 -0.0082 11 7 4.1999 -5.4464 -0.0088 12 6 4.2464 -6.9107 -0.0103 13 6 5.7045 -7.3746 -0.0121 14 1 6.2306 -6.9241 0.8295 15 6 5.7556 -8.8991 0.1104 16 6 7.2141 -9.3615 0.1417 17 6 7.9017 -8.9582 -1.1666 18 7 7.7310 -7.5124 -1.3643 19 6 8.8155 -6.7056 -1.5845 20 1 8.7827 -5.6658 -1.2942 21 6 9.9565 -7.2241 -2.1809 22 7 9.8962 -8.3630 -2.8379 23 14 11.5778 -6.3053 -2.0514 24 1 11.9533 -6.1632 -0.6216 25 1 12.6351 -7.0636 -2.7673 26 1 11.4342 -4.9592 -2.6617 27 6 6.3751 -6.9480 -1.3217 28 6 1.8020 -2.5351 -0.0040 29 6 2.2211 -1.2203 -0.0022 30 1 -0.3632 -0.0006 1.0277 31 1 -0.3633 0.8902 -0.5133 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6603 2.1113 0.0004 34 1 4.1459 2.0887 -0.0001 35 1 5.3528 -0.0025 -0.0024 36 1 5.0871 -2.7833 0.0062 37 1 5.0240 -4.9349 -0.0079 38 1 3.7449 -7.2911 0.8795 39 1 3.7440 -7.2893 -0.9005 40 1 5.2574 -9.2065 1.0299 41 1 5.2505 -9.3493 -0.7442 42 1 7.7266 -8.8923 0.9816 43 1 7.2500 -10.4453 0.2525 44 1 8.9638 -9.1964 -1.1097 45 1 7.4483 -9.4968 -1.9987 46 1 10.6937 -8.7256 -3.2544 47 1 5.7973 -7.3223 -2.1669 48 1 6.4298 -5.8604 -1.3669 49 1 0.7801 -2.8846 -0.0036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023700310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:56 Heat of formation + Delta-G solvation = 44.874147 kcal Electronic energy + Delta-G solvation = -28938.646138 eV Core-core repulsion = 25059.512778 eV Total energy + Delta-G solvation = -3879.133361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.44844 -39.42425 -37.77006 -36.83295 -34.76570 -34.34231 -32.99469 -30.99171 -30.44731 -30.09863 -28.67381 -27.19557 -25.71536 -25.27095 -23.44316 -22.23245 -22.10892 -21.63303 -20.85506 -19.86347 -18.98612 -17.97624 -17.09852 -16.70328 -16.22082 -15.80335 -15.55939 -15.31428 -15.06483 -14.81412 -14.43536 -14.11864 -13.89747 -13.68517 -13.56179 -13.41671 -13.33557 -13.04734 -12.78500 -12.41742 -12.29439 -12.20544 -12.15131 -11.98478 -11.78787 -11.37643 -11.27809 -11.02822 -10.71722 -10.50775 -10.37590 -10.25178 -10.17653 -9.98967 -9.87270 -9.55422 -9.42617 -8.94359 -8.65364 -8.47913 -7.58284 -6.69206 -5.80918 -3.23527 0.48793 1.10564 2.02046 2.42995 3.18913 3.34692 3.39027 3.41346 3.41676 3.60063 4.18704 4.39013 4.45717 4.52372 4.64805 4.71506 4.91108 5.10171 5.14897 5.20110 5.27254 5.28897 5.31999 5.45434 5.47918 5.54829 5.62942 5.65676 5.69995 5.83735 5.85684 5.99524 6.01789 6.07649 6.12962 6.25936 6.34810 6.39078 6.50356 6.57683 6.59885 6.62563 6.71766 6.78979 6.86789 6.97527 7.00471 7.39593 7.65909 7.70505 7.75802 8.40287 8.42435 9.18722 9.82551 10.39491 11.27294 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.002558 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.515014 B =10942.600107 C =12927.554081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.039 4.039 3 C -0.144 4.144 4 C -0.131 4.131 5 C 0.035 3.965 6 N -0.336 5.336 7 C -0.006 4.006 8 C -0.166 4.166 9 C 0.585 3.415 10 O -0.545 6.545 11 N -0.720 5.720 12 C 0.128 3.872 13 C -0.117 4.117 14 H 0.072 0.928 15 C -0.100 4.100 16 C -0.142 4.142 17 C 0.169 3.831 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.154 3.846 28 C -0.133 4.133 29 C 0.025 3.975 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.145 0.855 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.400 0.600 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.017 0.983 46 H 0.254 0.746 47 H 0.019 0.981 48 H 0.049 0.951 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.526 16.458 7.695 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.040 4.040 3 C -0.164 4.164 4 C -0.151 4.151 5 C -0.083 4.083 6 N 0.001 4.999 7 C -0.140 4.140 8 C -0.174 4.174 9 C 0.372 3.628 10 O -0.423 6.423 11 N -0.371 5.371 12 C 0.005 3.995 13 C -0.138 4.138 14 H 0.091 0.909 15 C -0.138 4.138 16 C -0.181 4.181 17 C 0.043 3.957 18 N -0.314 5.314 19 C -0.384 4.384 20 H 0.081 0.919 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.027 3.973 28 C -0.157 4.157 29 C -0.079 4.079 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.180 0.820 36 H 0.196 0.804 37 H 0.235 0.765 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.068 0.932 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.891 16.050 7.572 23.166 hybrid contribution 1.556 0.728 -0.018 1.718 sum -13.335 16.778 7.555 22.724 Atomic orbital electron populations 1.20738 0.89625 1.03481 1.02935 1.19372 0.96466 0.90116 0.98060 1.20806 0.93690 0.97845 1.04072 1.20695 0.94802 0.97081 1.02488 1.21702 0.98549 0.83129 1.04957 1.41258 1.07189 1.05374 1.46117 1.22216 0.99672 0.80565 1.11579 1.19676 0.93301 0.92770 1.11604 1.17398 0.83610 0.85736 0.76074 1.90755 1.33386 1.67543 1.50666 1.45921 1.08041 1.08153 1.74942 1.21465 0.97683 0.78544 1.01851 1.21950 0.93147 0.97054 1.01658 0.90913 1.21340 0.97808 0.94189 1.00457 1.22172 0.95285 0.98875 1.01753 1.20804 1.00597 0.83552 0.90733 1.44043 1.00515 1.03955 1.82895 1.19102 0.92078 0.93868 1.33329 0.91855 1.25029 0.99402 0.97881 0.97296 1.70031 1.28083 1.21089 1.35323 0.86390 0.83705 0.79088 0.77672 1.21062 1.21623 1.20945 1.20897 0.87201 0.96571 0.92587 1.21049 0.98719 0.88755 1.07208 1.18639 0.81809 0.94962 1.12539 0.90474 0.90906 0.90732 0.84990 0.83705 0.81979 0.80443 0.76470 0.91889 0.91488 0.93394 0.92438 0.92781 0.93184 0.89557 0.96442 0.93555 0.96295 0.93245 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.91 36.01 0.36 -0.37 16 2 C -0.04 -0.36 5.91 -104.32 -0.62 -0.97 16 3 C -0.14 -1.09 9.72 -39.50 -0.38 -1.48 16 4 C -0.13 -0.92 9.97 -39.91 -0.40 -1.32 16 5 C 0.03 0.29 10.89 -16.35 -0.18 0.11 16 6 N -0.34 -3.68 2.92 -60.42 -0.18 -3.85 16 7 C -0.01 -0.07 11.09 -16.17 -0.18 -0.25 16 8 C -0.17 -2.24 6.12 -105.07 -0.64 -2.89 16 9 C 0.58 9.07 7.82 -12.49 -0.10 8.97 16 10 O -0.55 -10.22 16.92 5.28 0.09 -10.13 16 11 N -0.72 -10.13 5.32 -61.36 -0.33 -10.45 16 12 C 0.13 1.92 5.07 -4.04 -0.02 1.90 16 13 C -0.12 -1.93 2.37 -90.50 -0.21 -2.14 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.10 -1.64 5.17 -26.70 -0.14 -1.78 16 16 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 17 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 18 N -0.59 -14.40 3.00 -172.31 -0.52 -14.92 16 19 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 20 H 0.06 1.63 7.89 -52.48 -0.41 1.21 16 21 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 22 N -0.90 -25.87 11.19 55.49 0.62 -25.25 16 23 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.15 3.08 5.60 -3.71 -0.02 3.06 16 28 C -0.13 -1.71 10.27 -38.55 -0.40 -2.10 16 29 C 0.02 0.28 6.60 -84.00 -0.55 -0.27 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.07 0.51 7.69 -51.93 -0.40 0.11 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.18 1.56 7.42 -52.48 -0.39 1.18 16 37 H 0.40 4.96 6.60 -40.82 -0.27 4.69 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.09 2.28 6.04 -51.93 -0.31 1.96 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 0.94 7.14 -51.93 -0.37 0.57 16 49 H 0.15 1.84 7.93 -52.49 -0.42 1.43 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -33.24 395.32 -10.90 -44.13 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.62 Total: 3.63 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -3.89 Total: -5.32 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.40 Total: -54.48 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.24 -10.90 -44.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023700310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.009 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds