Wall clock time and date at job start Wed Apr 1 2020 00:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35740 * 120.33418 * 2 1 4 4 C 1.40829 * 119.71905 * 180.02562 * 3 2 1 5 5 C 1.34536 * 120.58678 * 0.02562 * 4 3 2 6 6 N 1.37440 * 120.74446 * 0.02562 * 5 4 3 7 7 C 1.35123 * 131.29457 * 180.29760 * 6 5 4 8 8 C 1.38059 * 108.77489 * 180.14989 * 7 6 5 9 9 C 1.47499 * 126.37339 * 179.82668 * 8 7 6 10 10 O 1.21597 * 119.99783 * 179.68707 * 9 8 7 11 11 N 1.34777 * 119.99934 * 359.69187 * 9 8 7 12 12 C 1.46502 * 119.99609 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46916 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.49931 * 54.99651 * 13 12 11 15 15 C 1.53034 * 109.49887 * 175.06295 * 13 12 11 16 16 C 1.53035 * 109.53963 * 181.31496 * 15 13 12 17 17 C 1.53200 * 109.31473 * 298.63584 * 16 15 13 18 18 N 1.46924 * 108.77129 * 54.63422 * 17 16 15 19 19 C 1.36946 * 120.62772 * 126.43474 * 18 17 16 20 20 H 1.08006 * 119.99575 * 207.66445 * 19 18 17 21 21 C 1.38799 * 119.99931 * 27.66993 * 19 18 17 22 22 N 1.31621 * 120.00404 * 17.35295 * 21 19 18 23 23 Si 1.86803 * 119.99817 * 197.35014 * 21 19 18 24 24 H 1.48506 * 109.47040 * 60.00208 * 23 21 19 25 25 H 1.48503 * 109.47299 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47542 * 299.99932 * 23 21 19 27 27 C 1.46935 * 118.76765 * 306.41483 * 18 17 16 28 28 C 1.41196 * 107.25264 * 359.56694 * 8 7 6 29 29 C 1.37952 * 119.80376 * 359.97438 * 6 5 4 30 30 H 1.09000 * 109.46534 * 269.96508 * 1 2 3 31 31 H 1.08996 * 109.47146 * 29.96954 * 1 2 3 32 32 H 1.08999 * 109.47365 * 149.97265 * 1 2 3 33 33 H 1.08000 * 120.13993 * 0.02562 * 3 2 1 34 34 H 1.07995 * 119.70492 * 180.02562 * 4 3 2 35 35 H 1.08001 * 119.62925 * 179.97438 * 5 4 3 36 36 H 1.08008 * 125.61405 * 359.97040 * 7 6 5 37 37 H 0.96996 * 119.99937 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.47042 * 299.99625 * 12 11 9 39 39 H 1.08998 * 109.47263 * 60.00070 * 12 11 9 40 40 H 1.09003 * 109.46310 * 301.33792 * 15 13 12 41 41 H 1.09001 * 109.45973 * 61.31085 * 15 13 12 42 42 H 1.09004 * 109.50095 * 58.58649 * 16 15 13 43 43 H 1.09005 * 109.50363 * 178.68491 * 16 15 13 44 44 H 1.09000 * 109.58657 * 174.41869 * 17 16 15 45 45 H 1.08992 * 109.58507 * 294.84974 * 17 16 15 46 46 H 0.97003 * 120.00220 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.55816 * 293.78727 * 27 18 17 48 48 H 1.08998 * 109.61953 * 173.36317 * 27 18 17 49 49 H 1.08002 * 126.56421 * 180.30441 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1564 -0.0005 5 6 4.2729 -0.0090 -0.0016 6 7 3.6006 -1.2078 -0.0027 7 6 4.0499 -2.4821 0.0015 8 6 2.9649 -3.3358 -0.0055 9 6 3.0118 -4.8100 -0.0076 10 8 1.9786 -5.4512 -0.0082 11 7 4.1999 -5.4464 -0.0088 12 6 4.2464 -6.9107 -0.0103 13 6 5.7045 -7.3746 -0.0121 14 1 6.2306 -6.9241 0.8295 15 6 5.7556 -8.8991 0.1104 16 6 7.2141 -9.3615 0.1417 17 6 7.9017 -8.9582 -1.1666 18 7 7.7310 -7.5124 -1.3643 19 6 8.8155 -6.7056 -1.5845 20 1 8.7827 -5.6658 -1.2942 21 6 9.9565 -7.2241 -2.1809 22 7 9.8962 -8.3630 -2.8379 23 14 11.5778 -6.3053 -2.0514 24 1 11.9533 -6.1632 -0.6216 25 1 12.6351 -7.0636 -2.7673 26 1 11.4342 -4.9592 -2.6617 27 6 6.3751 -6.9480 -1.3217 28 6 1.8020 -2.5351 -0.0040 29 6 2.2211 -1.2203 -0.0022 30 1 -0.3632 -0.0006 1.0277 31 1 -0.3633 0.8902 -0.5133 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6603 2.1113 0.0004 34 1 4.1459 2.0887 -0.0001 35 1 5.3528 -0.0025 -0.0024 36 1 5.0871 -2.7833 0.0062 37 1 5.0240 -4.9349 -0.0079 38 1 3.7449 -7.2911 0.8795 39 1 3.7440 -7.2893 -0.9005 40 1 5.2574 -9.2065 1.0299 41 1 5.2505 -9.3493 -0.7442 42 1 7.7266 -8.8923 0.9816 43 1 7.2500 -10.4453 0.2525 44 1 8.9638 -9.1964 -1.1097 45 1 7.4483 -9.4968 -1.9987 46 1 10.6937 -8.7256 -3.2544 47 1 5.7973 -7.3223 -2.1669 48 1 6.4298 -5.8604 -1.3669 49 1 0.7801 -2.8846 -0.0036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023700310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:54 Heat of formation + Delta-G solvation = 26.733689 kcal Electronic energy + Delta-G solvation = -28939.432768 eV Core-core repulsion = 25059.512778 eV Total energy + Delta-G solvation = -3879.919990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.23249 -40.64917 -39.29570 -37.57207 -36.24449 -35.03233 -34.66347 -32.31784 -32.19642 -31.15607 -29.50152 -27.81063 -27.27361 -26.91382 -24.49856 -23.77022 -22.97857 -22.60008 -22.21373 -21.11244 -20.39373 -18.85967 -18.55866 -17.94936 -17.07538 -16.81241 -16.70068 -16.61809 -16.24975 -16.12710 -15.70643 -15.31423 -15.08941 -14.99570 -14.78651 -14.50111 -14.26329 -14.12777 -13.98602 -13.73887 -13.68224 -13.56639 -13.16281 -13.00726 -12.83658 -12.57794 -12.46368 -12.35053 -12.30028 -12.05905 -11.97016 -11.80913 -11.57087 -11.38396 -11.11308 -11.10311 -11.00220 -10.51129 -10.12744 -9.54332 -8.66993 -8.31933 -7.85267 -5.30872 -0.20541 0.36191 1.07297 1.47597 1.50545 1.56863 1.68799 2.25918 2.47328 2.52233 2.55235 3.29323 3.50847 3.60140 3.74562 3.85311 4.00265 4.01055 4.03092 4.06884 4.10344 4.17710 4.39397 4.42538 4.48173 4.59275 4.63901 4.75265 4.78234 4.79965 4.83244 4.89524 4.91063 4.94885 5.02888 5.12201 5.13889 5.24090 5.24214 5.33901 5.34860 5.40448 5.46636 5.49771 5.58245 5.66580 5.68060 5.79615 5.88483 6.28054 6.39988 6.57565 7.16063 7.23570 7.87656 8.40035 9.20984 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.002558 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.515014 B =10942.600107 C =12927.554081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.066 4.066 3 C -0.133 4.133 4 C -0.125 4.125 5 C 0.014 3.986 6 N -0.340 5.340 7 C -0.005 4.005 8 C -0.193 4.193 9 C 0.585 3.415 10 O -0.586 6.586 11 N -0.712 5.712 12 C 0.138 3.862 13 C -0.099 4.099 14 H 0.079 0.921 15 C -0.098 4.098 16 C -0.129 4.129 17 C 0.172 3.828 18 N -0.609 5.609 19 C -0.261 4.261 20 H 0.072 0.928 21 C -0.054 4.054 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.277 1.277 25 H -0.298 1.298 26 H -0.274 1.274 27 C 0.153 3.847 28 C -0.164 4.164 29 C 0.020 3.980 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.162 0.838 34 H 0.181 0.819 35 H 0.189 0.811 36 H 0.201 0.799 37 H 0.410 0.590 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.052 0.948 45 H -0.009 1.009 46 H 0.249 0.751 47 H 0.004 0.996 48 H 0.057 0.943 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.405 19.528 9.155 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.067 4.067 3 C -0.154 4.154 4 C -0.144 4.144 5 C -0.103 4.103 6 N -0.002 5.002 7 C -0.139 4.139 8 C -0.200 4.200 9 C 0.374 3.626 10 O -0.468 6.468 11 N -0.363 5.363 12 C 0.014 3.986 13 C -0.119 4.119 14 H 0.097 0.903 15 C -0.136 4.136 16 C -0.168 4.168 17 C 0.046 3.954 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.090 0.910 21 C -0.249 4.249 22 N -0.583 5.583 23 Si 0.795 3.205 24 H -0.203 1.203 25 H -0.225 1.225 26 H -0.199 1.199 27 C 0.027 3.973 28 C -0.188 4.188 29 C -0.085 4.085 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.179 0.821 34 H 0.198 0.802 35 H 0.206 0.794 36 H 0.218 0.782 37 H 0.246 0.754 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.010 0.990 46 H 0.058 0.942 47 H 0.022 0.978 48 H 0.076 0.924 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.770 19.151 9.052 25.823 hybrid contribution 1.482 -0.062 -0.507 1.568 sum -13.287 19.089 8.544 24.778 Atomic orbital electron populations 1.20769 0.88324 1.03980 1.03489 1.19709 0.97686 0.89795 0.99474 1.21287 0.94284 0.98385 1.01397 1.21229 0.94853 0.98055 1.00259 1.22353 1.00065 0.82477 1.05361 1.41474 1.07164 1.06048 1.45533 1.22433 1.00007 0.80632 1.10876 1.19561 0.94596 0.91799 1.14065 1.17694 0.83185 0.86595 0.75116 1.90720 1.34703 1.68560 1.52794 1.45822 1.08192 1.07849 1.74395 1.21300 0.96392 0.79084 1.01852 1.21708 0.93529 0.97266 0.99419 0.90299 1.21343 0.96300 0.93918 1.02031 1.21998 0.96206 1.00143 0.98501 1.20643 0.98881 0.83352 0.92477 1.44319 1.01719 1.04107 1.83073 1.19522 0.92867 0.94504 1.32198 0.90987 1.25818 1.02631 0.98921 0.97534 1.70202 1.28406 1.22894 1.36841 0.85347 0.79436 0.77998 0.77698 1.20281 1.22489 1.19919 1.21018 0.85290 0.96927 0.94052 1.21089 0.98519 0.89793 1.09373 1.18938 0.82551 0.95280 1.11725 0.89864 0.88872 0.91771 0.82071 0.80198 0.79355 0.78232 0.75378 0.90875 0.92557 0.90122 0.92719 0.92736 0.91272 0.92934 0.99047 0.94241 0.97829 0.92412 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.91 71.24 0.71 -0.60 16 2 C -0.07 -1.10 5.91 -19.67 -0.12 -1.21 16 3 C -0.13 -1.58 9.72 22.32 0.22 -1.36 16 4 C -0.12 -1.28 9.97 22.06 0.22 -1.06 16 5 C 0.01 0.20 10.89 82.97 0.90 1.10 16 6 N -0.34 -6.96 2.92 -345.06 -1.01 -7.96 16 7 C -0.01 -0.11 11.09 84.14 0.93 0.82 16 8 C -0.19 -5.31 6.12 -20.15 -0.12 -5.44 16 9 C 0.59 18.48 7.82 86.68 0.68 19.15 16 10 O -0.59 -22.71 16.92 -4.02 -0.07 -22.78 16 11 N -0.71 -19.61 5.32 -466.29 -2.48 -22.09 16 12 C 0.14 3.98 5.07 86.38 0.44 4.42 16 13 C -0.10 -3.10 2.37 -10.72 -0.03 -3.12 16 14 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 15 C -0.10 -3.03 5.17 30.62 0.16 -2.88 16 16 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 17 C 0.17 8.28 5.31 86.37 0.46 8.74 16 18 N -0.61 -29.88 3.00 -699.08 -2.09 -31.97 16 19 C -0.26 -13.91 9.58 84.03 0.81 -13.10 16 20 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 21 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 22 N -0.94 -55.44 11.19 21.65 0.24 -55.20 16 23 Si 0.97 43.89 29.59 68.60 2.03 45.92 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 C 0.15 6.07 5.60 86.36 0.48 6.55 16 28 C -0.16 -4.39 10.27 22.94 0.24 -4.15 16 29 C 0.02 0.46 6.60 38.90 0.26 0.72 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 32 H 0.06 0.89 7.69 -2.39 -0.02 0.87 16 33 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 34 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 35 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.20 3.18 7.42 -2.91 -0.02 3.16 16 37 H 0.41 9.67 6.60 -92.71 -0.61 9.06 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.98 8.14 -2.38 -0.02 1.97 16 43 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.05 2.87 6.04 -2.39 -0.01 2.85 16 45 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 47 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 48 H 0.06 2.15 7.14 -2.39 -0.02 2.14 16 49 H 0.15 3.88 7.93 -2.91 -0.02 3.85 16 Total: -1.00 -74.81 395.32 3.79 -71.02 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.34 Total: 21.59 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 6.83 Total: 1.49 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -5.34 Total: -117.23 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.07 Total: -22.78 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -74.81 3.79 -71.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023700310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.754 kcal (2) G-P(sol) polarization free energy of solvation -74.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds