Wall clock time and date at job start Wed Apr 1 2020 00:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35750 * 120.33167 * 2 1 4 4 C 1.40829 * 119.71926 * 179.76752 * 3 2 1 5 5 C 1.34533 * 120.58174 * 0.51455 * 4 3 2 6 6 N 1.37436 * 120.74525 * 359.75953 * 5 4 3 7 7 C 1.35133 * 131.28168 * 180.02562 * 6 5 4 8 8 C 1.38062 * 108.76512 * 179.97438 * 7 6 5 9 9 C 1.47500 * 126.36929 * 180.02562 * 8 7 6 10 10 O 1.21601 * 119.99695 * 179.97438 * 9 8 7 11 11 N 1.34773 * 120.00341 * 359.97202 * 9 8 7 12 12 C 1.46495 * 120.00358 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47190 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.58791 * 59.77185 * 13 12 11 15 15 C 1.53191 * 109.58837 * 180.02562 * 13 12 11 16 16 C 1.53039 * 109.31771 * 174.41843 * 15 13 12 17 17 C 1.53039 * 109.53890 * 298.63785 * 16 15 13 18 18 C 1.53199 * 109.31370 * 61.36199 * 17 16 15 19 19 N 1.46928 * 108.77093 * 305.36340 * 18 17 16 20 20 C 1.36934 * 120.63274 * 233.58118 * 19 18 17 21 21 H 1.08001 * 120.00163 * 148.85643 * 20 19 18 22 22 C 1.38812 * 120.00135 * 328.86100 * 20 19 18 23 23 N 1.31625 * 120.00320 * 162.47139 * 22 20 19 24 24 Si 1.86808 * 119.99802 * 342.47566 * 22 20 19 25 25 H 1.48496 * 109.47144 * 90.00310 * 24 22 20 26 26 H 1.48502 * 109.46631 * 210.00362 * 24 22 20 27 27 H 1.48497 * 109.47123 * 329.99689 * 24 22 20 28 28 C 1.41205 * 107.25802 * 359.97438 * 8 7 6 29 29 C 1.37950 * 119.81107 * 359.97438 * 6 5 4 30 30 H 1.09005 * 109.46850 * 269.71816 * 1 2 3 31 31 H 1.08999 * 109.47349 * 29.71982 * 1 2 3 32 32 H 1.09001 * 109.46893 * 149.72260 * 1 2 3 33 33 H 1.07997 * 120.13659 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.70323 * 180.25128 * 4 3 2 35 35 H 1.08008 * 119.62851 * 179.73633 * 5 4 3 36 36 H 1.07995 * 125.61605 * 0.02562 * 7 6 5 37 37 H 0.97005 * 119.99514 * 0.02562 * 11 9 8 38 38 H 1.09008 * 109.46719 * 299.99943 * 12 11 9 39 39 H 1.08996 * 109.47526 * 59.99693 * 12 11 9 40 40 H 1.08999 * 109.50129 * 294.37538 * 15 13 12 41 41 H 1.09004 * 109.49902 * 54.43935 * 15 13 12 42 42 H 1.09000 * 109.45793 * 58.65164 * 16 15 13 43 43 H 1.09002 * 109.46333 * 178.63147 * 16 15 13 44 44 H 1.09003 * 109.50245 * 181.31238 * 17 16 15 45 45 H 1.09002 * 109.49734 * 301.41097 * 17 16 15 46 46 H 1.08994 * 109.58766 * 65.15122 * 18 17 16 47 47 H 1.08993 * 109.58682 * 185.44000 * 18 17 16 48 48 H 0.96997 * 119.99830 * 180.02562 * 23 22 20 49 49 H 1.07993 * 126.56602 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1925 1.1717 0.0000 4 6 3.6007 1.1566 0.0050 5 6 4.2727 -0.0088 -0.0007 6 7 3.6005 -1.2075 -0.0065 7 6 4.0501 -2.4818 -0.0122 8 6 2.9651 -3.3356 -0.0159 9 6 3.0122 -4.8098 -0.0220 10 8 1.9791 -5.4511 -0.0244 11 7 4.2003 -5.4461 -0.0249 12 6 4.2471 -6.9103 -0.0315 13 6 5.7051 -7.3740 -0.0331 14 1 6.2097 -6.9961 0.8561 15 6 5.7571 -8.9050 -0.0406 16 6 7.2109 -9.3614 -0.1826 17 6 7.7801 -8.8523 -1.5088 18 6 7.7510 -7.3206 -1.5179 19 7 6.3803 -6.8720 -1.2376 20 6 5.7443 -6.0021 -2.0825 21 1 4.6717 -6.0496 -2.1992 22 6 6.4782 -5.0593 -2.7891 23 7 5.9494 -4.4642 -3.8373 24 14 8.2166 -4.6351 -2.2524 25 1 9.1795 -5.5340 -2.9379 26 1 8.5147 -3.2250 -2.6101 27 1 8.3371 -4.8089 -0.7826 28 6 1.8020 -2.5349 -0.0117 29 6 2.2210 -1.2202 -0.0059 30 1 -0.3633 -0.0051 1.0277 31 1 -0.3634 0.8925 -0.5095 32 1 -0.3633 -0.8875 -0.5181 33 1 1.6601 2.1113 0.0004 34 1 4.1458 2.0890 0.0091 35 1 5.3528 -0.0023 -0.0011 36 1 5.0873 -2.7828 -0.0128 37 1 5.0244 -4.9345 -0.0227 38 1 3.7451 -7.2938 0.8569 39 1 3.7450 -7.2859 -0.9231 40 1 5.3452 -9.2877 0.8932 41 1 5.1727 -9.2848 -0.8787 42 1 7.7995 -8.9608 0.6428 43 1 7.2532 -10.4505 -0.1638 44 1 8.8081 -9.1973 -1.6200 45 1 7.1770 -9.2325 -2.3334 46 1 8.4247 -6.9378 -0.7514 47 1 8.0646 -6.9550 -2.4957 48 1 6.4625 -3.8057 -4.3313 49 1 0.7802 -2.8846 -0.0126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024758751.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:32 Heat of formation + Delta-G solvation = 57.963111 kcal Electronic energy + Delta-G solvation = -30299.075568 eV Core-core repulsion = 26420.509788 eV Total energy + Delta-G solvation = -3878.565781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 6.29 seconds Orbital eigenvalues (eV) -42.03002 -39.06206 -37.87507 -36.45304 -34.21447 -33.96048 -33.04153 -31.13256 -30.72092 -30.06417 -28.35415 -26.86543 -26.17506 -24.80283 -22.98038 -22.67243 -21.82774 -21.30377 -20.62081 -19.61959 -19.01910 -17.62680 -16.79806 -16.40165 -15.90120 -15.60567 -15.33650 -15.09436 -14.94811 -14.80306 -14.08159 -13.80207 -13.72962 -13.69946 -13.44798 -13.29256 -13.21285 -12.97777 -12.74108 -12.46842 -12.12368 -12.00803 -11.90652 -11.65779 -11.62139 -11.46776 -11.30780 -10.99798 -10.83893 -10.65571 -10.44790 -10.19709 -10.00911 -9.96261 -9.61829 -9.50487 -9.26136 -8.70113 -8.39232 -8.06968 -7.18672 -6.94785 -5.97686 -3.39133 0.84972 1.50277 2.50105 2.83851 3.23651 3.37780 3.40106 3.54901 3.92987 4.19300 4.45020 4.54116 4.72328 4.81125 4.86156 4.98362 5.14262 5.22904 5.31402 5.34788 5.41715 5.48921 5.51282 5.53362 5.60394 5.69562 5.76707 5.85037 5.92575 5.97761 5.98862 6.07233 6.12078 6.16456 6.21495 6.27829 6.39084 6.43232 6.45053 6.47681 6.52707 6.58020 6.69055 6.76805 6.94195 6.99294 7.03096 7.24868 7.41905 7.93640 8.33634 8.37851 8.90246 9.01031 9.66724 10.05415 11.16715 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.003557 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.737718 B = 7870.554475 C = 9135.283374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.038 4.038 3 C -0.148 4.148 4 C -0.138 4.138 5 C 0.040 3.960 6 N -0.339 5.339 7 C 0.006 3.994 8 C -0.155 4.155 9 C 0.584 3.416 10 O -0.562 6.562 11 N -0.690 5.690 12 C 0.136 3.864 13 C 0.163 3.837 14 H 0.036 0.964 15 C -0.129 4.129 16 C -0.108 4.108 17 C -0.136 4.136 18 C 0.126 3.874 19 N -0.604 5.604 20 C -0.261 4.261 21 H 0.095 0.905 22 C 0.029 3.971 23 N -0.901 5.901 24 Si 0.874 3.126 25 H -0.288 1.288 26 H -0.306 1.306 27 H -0.271 1.271 28 C -0.134 4.134 29 C 0.020 3.980 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.408 0.592 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.023 0.977 47 H 0.071 0.929 48 H 0.261 0.739 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 6.681 10.199 12.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.039 4.039 3 C -0.168 4.168 4 C -0.158 4.158 5 C -0.078 4.078 6 N -0.002 5.002 7 C -0.128 4.128 8 C -0.162 4.162 9 C 0.371 3.629 10 O -0.442 6.442 11 N -0.340 5.340 12 C 0.012 3.988 13 C 0.057 3.943 14 H 0.054 0.946 15 C -0.168 4.168 16 C -0.146 4.146 17 C -0.175 4.175 18 C 0.001 3.999 19 N -0.329 5.329 20 C -0.389 4.389 21 H 0.112 0.888 22 C -0.170 4.170 23 N -0.543 5.543 24 Si 0.705 3.295 25 H -0.215 1.215 26 H -0.235 1.235 27 H -0.196 1.196 28 C -0.159 4.159 29 C -0.084 4.084 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.160 0.840 35 H 0.176 0.824 36 H 0.193 0.807 37 H 0.244 0.756 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.040 0.960 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.049 6.505 10.060 12.362 hybrid contribution 1.872 0.602 -0.104 1.970 sum -1.177 7.107 9.955 12.288 Atomic orbital electron populations 1.20715 0.89863 1.03354 1.02685 1.19329 0.96287 0.90207 0.98120 1.20722 0.93636 0.97634 1.04822 1.20601 0.94782 0.96855 1.03564 1.21648 0.98414 0.83336 1.04426 1.41232 1.07137 1.05312 1.46530 1.22239 0.99814 0.80347 1.10403 1.19697 0.92969 0.93117 1.10418 1.17306 0.83702 0.85605 0.76283 1.90700 1.33663 1.67553 1.52306 1.45745 1.08149 1.07405 1.72709 1.21253 0.96309 0.80076 1.01146 1.20751 0.91419 0.92265 0.89885 0.94632 1.21937 0.96731 0.96996 1.01172 1.21366 0.96323 0.99098 0.97791 1.22010 0.99450 0.98477 0.97580 1.21358 0.86958 0.92225 0.99398 1.44425 1.12648 1.52230 1.23626 1.19023 0.94187 1.08018 1.17674 0.88763 1.25345 0.97003 0.97268 0.97407 1.69824 1.37557 1.29370 1.17567 0.87100 0.86727 0.76296 0.79370 1.21521 1.23452 1.19650 1.21012 0.98626 0.88783 1.07459 1.18581 0.81842 0.94882 1.13062 0.90678 0.91113 0.90746 0.85297 0.84046 0.82360 0.80657 0.75563 0.92368 0.91150 0.92515 0.91560 0.92798 0.93069 0.93120 0.91780 0.95953 0.91044 0.92856 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.91 36.00 0.36 -0.70 16 2 C -0.04 -0.49 5.90 -104.32 -0.62 -1.10 16 3 C -0.15 -1.63 9.72 -39.49 -0.38 -2.01 16 4 C -0.14 -1.48 9.97 -39.91 -0.40 -1.88 16 5 C 0.04 0.51 10.89 -16.35 -0.18 0.33 16 6 N -0.34 -5.35 2.92 -60.42 -0.18 -5.53 16 7 C 0.01 0.10 11.09 -16.16 -0.18 -0.08 16 8 C -0.15 -2.94 6.12 -105.06 -0.64 -3.59 16 9 C 0.58 12.22 7.82 -12.49 -0.10 12.12 16 10 O -0.56 -13.13 16.92 5.28 0.09 -13.04 16 11 N -0.69 -13.63 3.85 -61.36 -0.24 -13.87 16 12 C 0.14 2.57 4.42 -4.05 -0.02 2.55 16 13 C 0.16 2.96 3.01 -67.60 -0.20 2.76 16 14 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 15 C -0.13 -2.01 5.37 -26.61 -0.14 -2.15 16 16 C -0.11 -1.60 5.88 -26.69 -0.16 -1.76 16 17 C -0.14 -2.30 6.08 -26.61 -0.16 -2.46 16 18 C 0.13 2.57 4.19 -3.71 -0.02 2.56 16 19 N -0.60 -13.04 2.71 -164.78 -0.45 -13.49 16 20 C -0.26 -6.60 7.45 -15.06 -0.11 -6.71 16 21 H 0.09 2.67 6.05 -52.49 -0.32 2.35 16 22 C 0.03 0.78 5.26 -17.43 -0.09 0.69 16 23 N -0.90 -26.31 13.97 55.49 0.78 -25.53 16 24 Si 0.87 20.71 24.34 -169.99 -4.14 16.58 16 25 H -0.29 -6.79 6.57 56.52 0.37 -6.42 16 26 H -0.31 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.27 -6.17 6.72 56.52 0.38 -5.79 16 28 C -0.13 -2.34 10.27 -38.55 -0.40 -2.73 16 29 C 0.02 0.31 6.60 -84.01 -0.55 -0.24 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.07 0.75 7.70 -51.93 -0.40 0.35 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.16 1.60 8.06 -52.48 -0.42 1.17 16 36 H 0.18 2.80 7.42 -52.49 -0.39 2.41 16 37 H 0.41 8.00 6.32 -40.82 -0.26 7.74 16 38 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.07 1.50 7.39 -51.93 -0.38 1.11 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.02 0.45 7.03 -51.93 -0.37 0.09 16 47 H 0.07 1.62 4.72 -51.93 -0.25 1.38 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.15 2.45 7.93 -52.49 -0.42 2.04 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -32.26 383.48 -9.80 -42.06 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -7.46 Total: 11.44 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -3.99 Total: -4.41 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.08 Total: -58.42 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.14 Total: 16.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.26 -9.80 -42.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024758751.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.024 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.29 seconds