Wall clock time and date at job start Wed Apr 1 2020 00:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35750 * 120.33167 * 2 1 4 4 C 1.40829 * 119.71926 * 179.76752 * 3 2 1 5 5 C 1.34533 * 120.58174 * 0.51455 * 4 3 2 6 6 N 1.37436 * 120.74525 * 359.75953 * 5 4 3 7 7 C 1.35133 * 131.28168 * 180.02562 * 6 5 4 8 8 C 1.38062 * 108.76512 * 179.97438 * 7 6 5 9 9 C 1.47500 * 126.36929 * 180.02562 * 8 7 6 10 10 O 1.21601 * 119.99695 * 179.97438 * 9 8 7 11 11 N 1.34773 * 120.00341 * 359.97202 * 9 8 7 12 12 C 1.46495 * 120.00358 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47190 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.58791 * 59.77185 * 13 12 11 15 15 C 1.53191 * 109.58837 * 180.02562 * 13 12 11 16 16 C 1.53039 * 109.31771 * 174.41843 * 15 13 12 17 17 C 1.53039 * 109.53890 * 298.63785 * 16 15 13 18 18 C 1.53199 * 109.31370 * 61.36199 * 17 16 15 19 19 N 1.46928 * 108.77093 * 305.36340 * 18 17 16 20 20 C 1.36934 * 120.63274 * 233.58118 * 19 18 17 21 21 H 1.08001 * 120.00163 * 148.85643 * 20 19 18 22 22 C 1.38812 * 120.00135 * 328.86100 * 20 19 18 23 23 N 1.31625 * 120.00320 * 162.47139 * 22 20 19 24 24 Si 1.86808 * 119.99802 * 342.47566 * 22 20 19 25 25 H 1.48496 * 109.47144 * 90.00310 * 24 22 20 26 26 H 1.48502 * 109.46631 * 210.00362 * 24 22 20 27 27 H 1.48497 * 109.47123 * 329.99689 * 24 22 20 28 28 C 1.41205 * 107.25802 * 359.97438 * 8 7 6 29 29 C 1.37950 * 119.81107 * 359.97438 * 6 5 4 30 30 H 1.09005 * 109.46850 * 269.71816 * 1 2 3 31 31 H 1.08999 * 109.47349 * 29.71982 * 1 2 3 32 32 H 1.09001 * 109.46893 * 149.72260 * 1 2 3 33 33 H 1.07997 * 120.13659 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.70323 * 180.25128 * 4 3 2 35 35 H 1.08008 * 119.62851 * 179.73633 * 5 4 3 36 36 H 1.07995 * 125.61605 * 0.02562 * 7 6 5 37 37 H 0.97005 * 119.99514 * 0.02562 * 11 9 8 38 38 H 1.09008 * 109.46719 * 299.99943 * 12 11 9 39 39 H 1.08996 * 109.47526 * 59.99693 * 12 11 9 40 40 H 1.08999 * 109.50129 * 294.37538 * 15 13 12 41 41 H 1.09004 * 109.49902 * 54.43935 * 15 13 12 42 42 H 1.09000 * 109.45793 * 58.65164 * 16 15 13 43 43 H 1.09002 * 109.46333 * 178.63147 * 16 15 13 44 44 H 1.09003 * 109.50245 * 181.31238 * 17 16 15 45 45 H 1.09002 * 109.49734 * 301.41097 * 17 16 15 46 46 H 1.08994 * 109.58766 * 65.15122 * 18 17 16 47 47 H 1.08993 * 109.58682 * 185.44000 * 18 17 16 48 48 H 0.96997 * 119.99830 * 180.02562 * 23 22 20 49 49 H 1.07993 * 126.56602 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1925 1.1717 0.0000 4 6 3.6007 1.1566 0.0050 5 6 4.2727 -0.0088 -0.0007 6 7 3.6005 -1.2075 -0.0065 7 6 4.0501 -2.4818 -0.0122 8 6 2.9651 -3.3356 -0.0159 9 6 3.0122 -4.8098 -0.0220 10 8 1.9791 -5.4511 -0.0244 11 7 4.2003 -5.4461 -0.0249 12 6 4.2471 -6.9103 -0.0315 13 6 5.7051 -7.3740 -0.0331 14 1 6.2097 -6.9961 0.8561 15 6 5.7571 -8.9050 -0.0406 16 6 7.2109 -9.3614 -0.1826 17 6 7.7801 -8.8523 -1.5088 18 6 7.7510 -7.3206 -1.5179 19 7 6.3803 -6.8720 -1.2376 20 6 5.7443 -6.0021 -2.0825 21 1 4.6717 -6.0496 -2.1992 22 6 6.4782 -5.0593 -2.7891 23 7 5.9494 -4.4642 -3.8373 24 14 8.2166 -4.6351 -2.2524 25 1 9.1795 -5.5340 -2.9379 26 1 8.5147 -3.2250 -2.6101 27 1 8.3371 -4.8089 -0.7826 28 6 1.8020 -2.5349 -0.0117 29 6 2.2210 -1.2202 -0.0059 30 1 -0.3633 -0.0051 1.0277 31 1 -0.3634 0.8925 -0.5095 32 1 -0.3633 -0.8875 -0.5181 33 1 1.6601 2.1113 0.0004 34 1 4.1458 2.0890 0.0091 35 1 5.3528 -0.0023 -0.0011 36 1 5.0873 -2.7828 -0.0128 37 1 5.0244 -4.9345 -0.0227 38 1 3.7451 -7.2938 0.8569 39 1 3.7450 -7.2859 -0.9231 40 1 5.3452 -9.2877 0.8932 41 1 5.1727 -9.2848 -0.8787 42 1 7.7995 -8.9608 0.6428 43 1 7.2532 -10.4505 -0.1638 44 1 8.8081 -9.1973 -1.6200 45 1 7.1770 -9.2325 -2.3334 46 1 8.4247 -6.9378 -0.7514 47 1 8.0646 -6.9550 -2.4957 48 1 6.4625 -3.8057 -4.3313 49 1 0.7802 -2.8846 -0.0126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024758751.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:25 Heat of formation + Delta-G solvation = 39.211080 kcal Electronic energy + Delta-G solvation = -30299.888718 eV Core-core repulsion = 26420.509788 eV Total energy + Delta-G solvation = -3879.378930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 4.19 seconds Orbital eigenvalues (eV) -43.20870 -40.65788 -39.41954 -37.54405 -35.76373 -35.02558 -34.85795 -32.68352 -32.44198 -31.23699 -29.51958 -27.85915 -27.68694 -26.46488 -24.35608 -24.24349 -22.96201 -22.48724 -22.09135 -21.12729 -20.53840 -18.91606 -18.35942 -17.83908 -17.41402 -16.92745 -16.71740 -16.56093 -16.45403 -16.07840 -15.38329 -15.29320 -15.17452 -15.05683 -14.78862 -14.74690 -14.32625 -14.19138 -14.10529 -13.73173 -13.66651 -13.58559 -13.23585 -13.11630 -12.92477 -12.57432 -12.52853 -12.35493 -12.28232 -12.04211 -11.95312 -11.68783 -11.54860 -11.28833 -11.20520 -11.08473 -10.91748 -10.61743 -9.93950 -9.48173 -8.77602 -8.30582 -8.05690 -5.43203 -0.18935 0.37725 1.12318 1.33888 1.41355 1.51446 1.70288 2.38469 2.47030 2.52375 2.65357 3.10801 3.32998 3.53027 3.76361 3.85779 3.93486 4.01236 4.08599 4.09317 4.17001 4.20504 4.33277 4.41262 4.45954 4.50358 4.52749 4.64274 4.72055 4.78234 4.81733 4.83894 4.87825 4.95580 4.95902 5.07241 5.13364 5.17056 5.23285 5.26041 5.31677 5.32786 5.37971 5.46091 5.60433 5.66151 5.69897 5.90846 5.97321 6.28361 6.28585 6.73801 6.98271 7.37103 7.69342 8.10051 9.13056 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.003557 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.737718 B = 7870.554475 C = 9135.283374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.064 4.064 3 C -0.131 4.131 4 C -0.121 4.121 5 C 0.008 3.992 6 N -0.340 5.340 7 C -0.009 4.009 8 C -0.186 4.186 9 C 0.579 3.421 10 O -0.598 6.598 11 N -0.687 5.687 12 C 0.138 3.862 13 C 0.163 3.837 14 H 0.056 0.944 15 C -0.125 4.125 16 C -0.102 4.102 17 C -0.132 4.132 18 C 0.119 3.881 19 N -0.616 5.616 20 C -0.229 4.229 21 H 0.053 0.947 22 C -0.026 4.026 23 N -0.956 5.956 24 Si 0.939 3.061 25 H -0.285 1.285 26 H -0.317 1.317 27 H -0.251 1.251 28 C -0.168 4.168 29 C 0.023 3.977 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.169 0.831 34 H 0.185 0.815 35 H 0.181 0.819 36 H 0.181 0.819 37 H 0.408 0.592 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.046 0.954 46 H 0.036 0.964 47 H 0.044 0.956 48 H 0.256 0.744 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 8.143 12.466 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.065 4.065 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.109 4.109 6 N -0.002 5.002 7 C -0.143 4.143 8 C -0.193 4.193 9 C 0.367 3.633 10 O -0.481 6.481 11 N -0.335 5.335 12 C 0.014 3.986 13 C 0.058 3.942 14 H 0.073 0.927 15 C -0.164 4.164 16 C -0.140 4.140 17 C -0.171 4.171 18 C -0.006 4.006 19 N -0.342 5.342 20 C -0.359 4.359 21 H 0.071 0.929 22 C -0.220 4.220 23 N -0.602 5.602 24 Si 0.768 3.232 25 H -0.213 1.213 26 H -0.247 1.247 27 H -0.175 1.175 28 C -0.192 4.192 29 C -0.082 4.082 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.186 0.814 34 H 0.202 0.798 35 H 0.198 0.802 36 H 0.198 0.802 37 H 0.244 0.756 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.295 7.927 12.375 14.753 hybrid contribution 1.253 0.270 -0.805 1.513 sum -0.042 8.197 11.570 14.179 Atomic orbital electron populations 1.20768 0.87964 1.03963 1.03651 1.19749 0.97866 0.89522 0.99398 1.21302 0.94027 0.98413 1.01361 1.21229 0.95040 0.97637 1.00162 1.22326 0.99927 0.82773 1.05862 1.41424 1.07384 1.05750 1.45685 1.22159 0.99476 0.81123 1.11508 1.19659 0.94570 0.92230 1.12852 1.17700 0.83427 0.86655 0.75500 1.90647 1.34696 1.68556 1.54238 1.45742 1.07836 1.07809 1.72136 1.21299 0.97236 0.79651 1.00418 1.20961 0.90130 0.94230 0.88892 0.92660 1.21913 0.97855 0.94455 1.02190 1.21364 0.95138 1.00810 0.96678 1.21945 1.01022 0.95506 0.98579 1.21432 0.85961 0.94913 0.98246 1.44536 1.13321 1.51887 1.24446 1.18720 0.92522 1.07767 1.16856 0.92904 1.25861 1.00905 0.97739 0.97523 1.69988 1.39515 1.31098 1.19649 0.86054 0.82132 0.75072 0.79910 1.21270 1.24669 1.17468 1.21063 0.98274 0.89851 1.09978 1.18990 0.82297 0.95429 1.11519 0.89461 0.88561 0.92102 0.81391 0.79824 0.80207 0.80217 0.75555 0.90335 0.94555 0.89368 0.93228 0.91255 0.90305 0.90530 0.93468 0.94621 0.93774 0.93482 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 9.91 71.23 0.71 -1.20 16 2 C -0.06 -1.54 5.90 -19.67 -0.12 -1.66 16 3 C -0.13 -2.37 9.72 22.33 0.22 -2.15 16 4 C -0.12 -2.13 9.97 22.06 0.22 -1.91 16 5 C 0.01 0.19 10.89 82.97 0.90 1.10 16 6 N -0.34 -10.84 2.92 -345.07 -1.01 -11.84 16 7 C -0.01 -0.31 11.09 84.14 0.93 0.62 16 8 C -0.19 -7.62 6.12 -20.15 -0.12 -7.75 16 9 C 0.58 26.13 7.82 86.69 0.68 26.81 16 10 O -0.60 -30.16 16.92 -4.03 -0.07 -30.23 16 11 N -0.69 -28.67 3.85 -466.31 -1.80 -30.47 16 12 C 0.14 5.37 4.42 86.38 0.38 5.76 16 13 C 0.16 5.76 3.01 44.97 0.14 5.90 16 14 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 15 C -0.12 -3.60 5.37 30.67 0.16 -3.44 16 16 C -0.10 -2.63 5.88 30.62 0.18 -2.45 16 17 C -0.13 -4.12 6.08 30.67 0.19 -3.93 16 18 C 0.12 4.68 4.19 86.36 0.36 5.04 16 19 N -0.62 -26.54 2.71 -675.23 -1.83 -28.38 16 20 C -0.23 -12.06 7.45 84.03 0.63 -11.43 16 21 H 0.05 3.22 6.05 -2.91 -0.02 3.20 16 22 C -0.03 -1.41 5.26 84.86 0.45 -0.96 16 23 N -0.96 -58.77 13.97 21.65 0.30 -58.47 16 24 Si 0.94 43.61 24.34 68.60 1.67 45.28 16 25 H -0.29 -13.03 6.57 99.48 0.65 -12.38 16 26 H -0.32 -15.21 7.11 99.48 0.71 -14.50 16 27 H -0.25 -10.64 6.72 99.48 0.67 -9.98 16 28 C -0.17 -6.30 10.27 22.94 0.24 -6.06 16 29 C 0.02 0.74 6.60 38.90 0.26 1.00 16 30 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.10 1.20 8.08 -2.39 -0.02 1.18 16 32 H 0.06 1.25 7.70 -2.39 -0.02 1.23 16 33 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.18 6.09 7.42 -2.91 -0.02 6.07 16 37 H 0.41 16.75 6.32 -92.70 -0.59 16.17 16 38 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 39 H 0.04 1.65 7.39 -2.39 -0.02 1.64 16 40 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.04 1.33 7.03 -2.39 -0.02 1.31 16 47 H 0.04 1.98 4.72 -2.39 -0.01 1.97 16 48 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 49 H 0.15 5.36 7.93 -2.91 -0.02 5.33 16 Total: -1.00 -76.22 383.48 3.94 -72.28 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: 0.28 Total: 38.55 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 6.39 Total: 3.28 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -4.33 Total: -129.16 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.07 Total: -30.23 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.67 Total: 45.28 kcal Total: -76.22 3.94 -72.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024758751.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.493 kcal (2) G-P(sol) polarization free energy of solvation -76.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds