Wall clock time and date at job start Wed Apr 1 2020 00:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.36897 * 125.06003 * 2 1 4 4 H 0.97004 * 125.01677 * 0.02562 * 3 2 1 5 5 C 1.37126 * 109.97110 * 180.02562 * 3 2 1 6 6 C 1.40640 * 107.25403 * 0.02562 * 5 3 2 7 7 C 1.39538 * 120.03873 * 180.23845 * 6 5 3 8 8 C 1.37921 * 119.99110 * 359.49745 * 7 6 5 9 9 C 1.38317 * 120.58930 * 0.52902 * 8 7 6 10 10 C 1.39339 * 120.49815 * 359.71153 * 9 8 7 11 11 C 1.47509 * 120.21041 * 180.02562 * 10 9 8 12 12 O 1.21586 * 120.00240 * 127.31893 * 11 10 9 13 13 N 1.34781 * 119.99639 * 307.32561 * 11 10 9 14 14 C 1.46498 * 120.00002 * 4.47956 * 13 11 10 15 15 C 1.46496 * 119.99736 * 184.48510 * 13 11 10 16 16 H 1.09001 * 110.64442 * 1.68475 * 15 13 11 17 17 C 1.55157 * 110.71942 * 125.02080 * 15 13 11 18 18 C 1.54909 * 101.58215 * 153.86350 * 17 15 13 19 19 N 1.47433 * 104.83160 * 322.98957 * 18 17 15 20 20 C 1.36932 * 125.64631 * 204.09335 * 19 18 17 21 21 H 1.07999 * 119.99611 * 180.02562 * 20 19 18 22 22 C 1.38812 * 120.00413 * 0.04164 * 20 19 18 23 23 N 1.31621 * 119.99906 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00093 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47324 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47271 * 120.00092 * 24 22 20 27 27 H 1.48502 * 109.47141 * 239.99908 * 24 22 20 28 28 C 1.47016 * 108.69965 * 24.12687 * 19 18 17 29 29 C 1.34211 * 125.05700 * 180.02562 * 2 1 3 30 30 C 1.50703 * 126.55548 * 359.96222 * 29 2 1 31 31 H 1.09005 * 109.47024 * 89.97811 * 1 2 3 32 32 H 1.08999 * 109.47142 * 209.96861 * 1 2 3 33 33 H 1.08995 * 109.47095 * 329.97747 * 1 2 3 34 34 H 1.07999 * 120.00497 * 179.97438 * 7 6 5 35 35 H 1.07999 * 119.70346 * 180.26007 * 8 7 6 36 36 H 1.08004 * 119.74921 * 179.73562 * 9 8 7 37 37 H 1.08999 * 109.47353 * 125.37771 * 14 13 11 38 38 H 1.09002 * 109.47242 * 245.37374 * 14 13 11 39 39 H 1.09002 * 109.47140 * 5.37440 * 14 13 11 40 40 H 1.08998 * 111.00665 * 271.93760 * 17 15 13 41 41 H 1.08998 * 111.00678 * 35.79374 * 17 15 13 42 42 H 1.09002 * 110.36680 * 204.15492 * 18 17 15 43 43 H 1.08999 * 110.46457 * 81.87376 * 18 17 15 44 44 H 0.96997 * 120.00146 * 179.97438 * 23 22 20 45 45 H 1.09003 * 109.88483 * 239.52013 * 28 19 18 46 46 H 1.09010 * 109.88237 * 118.36178 * 28 19 18 47 47 H 1.08999 * 109.47134 * 270.00128 * 30 29 2 48 48 H 1.09001 * 109.47070 * 30.00285 * 30 29 2 49 49 H 1.09002 * 109.47048 * 150.00059 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2934 1.1206 0.0000 4 1 1.9628 2.0326 0.0004 5 6 3.6174 0.7636 -0.0006 6 6 3.6705 -0.6418 -0.0016 7 6 4.9040 -1.2942 0.0027 8 6 6.0719 -0.5606 -0.0026 9 6 6.0346 0.8221 -0.0011 10 6 4.8154 1.4967 -0.0003 11 6 4.7831 2.9714 0.0006 12 8 4.1313 3.5658 -0.8362 13 7 5.4762 3.6600 0.9291 14 6 6.3391 2.9489 1.8756 15 6 5.3665 5.1195 0.9918 16 1 4.6652 5.4847 0.2415 17 6 4.9441 5.5777 2.4127 18 6 5.5337 7.0092 2.4660 19 7 6.8146 6.9169 1.7419 20 6 7.8865 7.7530 1.9067 21 1 8.7839 7.6014 1.3253 22 6 7.8197 8.7952 2.8211 23 7 6.7259 8.9801 3.5295 24 14 9.2817 9.9361 3.0453 25 1 10.3797 9.5181 2.1372 26 1 8.8768 11.3285 2.7249 27 1 9.7511 9.8686 4.4526 28 6 6.7501 5.7792 0.8131 29 6 2.2779 -1.0986 -0.0005 30 6 1.8025 -2.5287 -0.0003 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3633 -0.8903 0.5133 33 1 -0.3633 0.8897 0.5142 34 1 4.9442 -2.3734 0.0024 35 1 7.0240 -1.0703 -0.0035 36 1 6.9576 1.3831 -0.0010 37 1 7.3469 3.3614 1.8291 38 1 5.9450 3.0658 2.8852 39 1 6.3674 1.8904 1.6170 40 1 3.8586 5.5983 2.5101 41 1 5.3913 4.9423 3.1772 42 1 5.7031 7.3114 3.4995 43 1 4.8672 7.7145 1.9696 44 1 6.6794 9.7082 4.1688 45 1 7.5361 5.0621 1.0501 46 1 6.8634 6.1309 -0.2125 47 1 1.6884 -2.8736 1.0274 48 1 0.8431 -2.5927 -0.5137 49 1 2.5322 -3.1542 -0.5146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033200461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:34 Heat of formation + Delta-G solvation = 57.219888 kcal Electronic energy + Delta-G solvation = -29716.810047 eV Core-core repulsion = 25838.212037 eV Total energy + Delta-G solvation = -3878.598009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.70264 -39.82769 -37.48891 -36.98768 -34.78024 -33.43099 -32.27060 -31.28426 -30.43617 -29.16627 -28.09357 -27.51557 -26.69016 -26.01039 -24.64863 -23.16332 -21.93198 -20.63289 -20.23750 -19.41592 -18.71016 -17.68300 -17.31095 -17.00467 -16.34396 -15.60217 -15.36196 -15.17599 -14.93190 -14.69762 -14.19656 -14.11005 -13.80664 -13.40334 -13.34478 -13.13769 -13.07320 -13.04708 -12.90033 -12.53085 -12.42900 -12.28162 -12.08387 -11.86935 -11.77017 -11.57302 -11.38858 -11.26403 -11.05092 -10.86677 -10.83610 -10.47305 -10.10796 -9.83731 -9.78322 -9.57395 -9.49896 -8.68841 -8.39074 -8.31768 -7.73180 -6.86939 -5.68124 -3.10316 0.67760 1.44295 2.28909 2.77806 2.93322 3.13778 3.38353 3.44040 3.46481 3.69797 4.36317 4.43987 4.48493 4.70694 4.78428 4.88597 4.96705 5.01849 5.17459 5.18207 5.28141 5.38086 5.39557 5.43728 5.48005 5.52479 5.53745 5.56452 5.60543 5.69091 5.73107 5.78400 5.79040 5.88372 5.96158 6.18531 6.22342 6.32850 6.35343 6.48091 6.50460 6.55403 6.62388 6.69247 6.92486 6.97626 7.33547 7.46123 7.55958 7.60707 7.81293 8.23338 8.32425 9.18680 9.79270 10.43461 11.35849 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.023457 B = 0.002412 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.392441 B =11605.300592 C =12308.535402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.079 3.921 3 N -0.582 5.582 4 H 0.419 0.581 5 C 0.144 3.856 6 C -0.107 4.107 7 C -0.053 4.053 8 C -0.153 4.153 9 C -0.068 4.068 10 C -0.133 4.133 11 C 0.556 3.444 12 O -0.546 6.546 13 N -0.590 5.590 14 C 0.057 3.943 15 C 0.126 3.874 16 H 0.102 0.898 17 C -0.152 4.152 18 C 0.154 3.846 19 N -0.602 5.602 20 C -0.221 4.221 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.922 5.922 24 Si 0.915 3.085 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.129 3.871 29 C -0.175 4.175 30 C -0.074 4.074 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.015 0.985 44 H 0.252 0.748 45 H 0.029 0.971 46 H 0.025 0.975 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.458 -24.497 -4.497 26.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 N -0.185 5.185 4 H 0.257 0.743 5 C 0.034 3.966 6 C -0.111 4.111 7 C -0.072 4.072 8 C -0.172 4.172 9 C -0.088 4.088 10 C -0.139 4.139 11 C 0.344 3.656 12 O -0.425 6.425 13 N -0.321 5.321 14 C -0.085 4.085 15 C 0.023 3.977 16 H 0.120 0.880 17 C -0.191 4.191 18 C 0.029 3.971 19 N -0.328 5.328 20 C -0.349 4.349 21 H 0.096 0.904 22 C -0.207 4.207 23 N -0.571 5.571 24 Si 0.746 3.254 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.003 3.997 29 C -0.182 4.182 30 C -0.131 4.131 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.047 0.953 46 H 0.043 0.957 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.811 -23.858 -4.809 26.241 hybrid contribution 0.741 1.248 0.115 1.455 sum -9.070 -22.611 -4.694 24.810 Atomic orbital electron populations 1.20478 0.87656 1.03756 1.03225 1.20166 0.93399 0.85377 1.03950 1.41669 1.03956 1.08706 1.64130 0.74289 1.17805 0.83860 0.93341 1.01610 1.19009 0.93424 0.91271 1.07432 1.20611 0.90264 0.99515 0.96816 1.20784 0.98158 0.93315 1.04969 1.21019 0.95778 0.94603 0.97372 1.18827 0.91680 0.92387 1.11012 1.18332 0.79429 0.86788 0.81003 1.90772 1.43541 1.70587 1.37551 1.47780 1.44685 1.07451 1.32136 1.22212 0.95166 0.97861 0.93286 1.22270 0.99012 0.77117 0.99336 0.87964 1.23365 0.99693 1.01070 0.94972 1.21934 0.85190 0.88877 1.01127 1.44439 1.13581 1.31313 1.43512 1.19119 0.92137 1.05789 1.17875 0.90383 1.24798 0.97743 0.98983 0.99168 1.69792 1.26101 1.32856 1.28371 0.85979 0.81389 0.80522 0.77498 1.20510 1.21727 1.21721 1.21514 0.93592 0.90592 0.94051 1.19995 0.90277 0.94784 1.13129 1.20076 1.00677 0.90807 1.01545 0.90368 0.89647 0.91176 0.85770 0.85288 0.84743 0.90884 0.91988 0.89393 0.92247 0.91578 0.87259 0.96743 0.93728 0.95306 0.95672 0.91945 0.91949 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 9.99 36.01 0.36 -0.24 16 2 C 0.08 0.80 7.08 -81.75 -0.58 0.22 16 3 N -0.58 -7.12 6.04 -6.76 -0.04 -7.16 16 4 H 0.42 4.98 8.96 -40.82 -0.37 4.62 16 5 C 0.14 1.95 6.98 -83.76 -0.58 1.37 16 6 C -0.11 -1.28 6.35 -105.15 -0.67 -1.94 16 7 C -0.05 -0.53 10.09 -39.21 -0.40 -0.93 16 8 C -0.15 -1.47 10.00 -39.67 -0.40 -1.87 16 9 C -0.07 -0.78 7.31 -39.14 -0.29 -1.07 16 10 C -0.13 -1.87 5.06 -104.88 -0.53 -2.40 16 11 C 0.56 9.26 7.19 -12.48 -0.09 9.17 16 12 O -0.55 -10.76 16.45 5.29 0.09 -10.67 16 13 N -0.59 -9.58 2.88 -173.07 -0.50 -10.07 16 14 C 0.06 0.76 9.17 59.85 0.55 1.31 16 15 C 0.13 2.40 3.36 -66.10 -0.22 2.18 16 16 H 0.10 2.10 7.00 -51.93 -0.36 1.74 16 17 C -0.15 -2.95 6.63 -24.58 -0.16 -3.11 16 18 C 0.15 3.76 5.89 -2.52 -0.01 3.75 16 19 N -0.60 -15.54 3.39 -170.07 -0.58 -16.12 16 20 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 23 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 24 Si 0.92 22.06 29.55 -169.99 -5.02 17.04 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 C 0.13 2.81 6.88 -3.07 -0.02 2.78 16 29 C -0.18 -1.80 6.32 -102.69 -0.65 -2.45 16 30 C -0.07 -0.52 9.96 36.01 0.36 -0.16 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.42 7.66 -51.93 -0.40 0.02 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.37 7.06 -52.48 -0.37 1.00 16 37 H 0.07 0.99 6.54 -51.93 -0.34 0.65 16 38 H 0.06 0.82 6.96 -51.93 -0.36 0.45 16 39 H 0.09 0.98 3.93 -51.93 -0.20 0.77 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.24 6.46 -51.93 -0.34 0.90 16 42 H 0.11 2.97 5.87 -51.93 -0.31 2.66 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 45 H 0.03 0.60 6.22 -51.93 -0.32 0.28 16 46 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.35 7.70 -51.93 -0.40 -0.05 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 387.36 15.07 5.84 5.84 Total: -1.00 -33.45 387.36 -10.36 -43.81 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.12 Total: 3.74 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -3.58 Total: -0.13 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.56 Total: -59.62 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.45 -10.36 -43.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033200461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.026 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds