Wall clock time and date at job start Wed Apr 1 2020 00:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34235 * 126.50464 * 2 1 4 4 N 1.36828 * 109.93340 * 180.14463 * 3 2 1 5 5 C 1.46497 * 125.06648 * 179.81476 * 4 3 2 6 6 C 1.50697 * 109.47363 * 264.70073 * 5 4 3 7 7 O 1.21282 * 119.99768 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00286 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99647 * 359.97438 * 8 6 5 10 10 C 1.46494 * 119.99995 * 180.02562 * 8 6 5 11 11 H 1.09000 * 110.78382 * 1.78287 * 10 8 6 12 12 C 1.55156 * 110.72065 * 125.02488 * 10 8 6 13 13 C 1.55125 * 101.48891 * 82.69522 * 12 10 8 14 14 N 1.47430 * 104.72361 * 37.29342 * 13 12 10 15 15 C 1.36931 * 125.64936 * 155.81521 * 14 13 12 16 16 H 1.08001 * 119.99956 * 190.42861 * 15 14 13 17 17 C 1.38809 * 120.00060 * 10.44191 * 15 14 13 18 18 N 1.31627 * 119.99977 * 9.05928 * 17 15 14 19 19 Si 1.86804 * 120.00193 * 188.79424 * 17 15 14 20 20 H 1.48497 * 109.46716 * 265.28296 * 19 17 15 21 21 H 1.48502 * 109.46744 * 25.28199 * 19 17 15 22 22 H 1.48491 * 109.47371 * 145.28577 * 19 17 15 23 23 C 1.47027 * 108.70230 * 335.55882 * 14 13 12 24 24 C 1.37692 * 109.87520 * 359.55587 * 4 3 2 25 25 C 1.39124 * 133.51334 * 180.26645 * 24 4 3 26 26 C 1.37745 * 119.77951 * 179.97438 * 25 24 4 27 27 C 1.38834 * 120.66984 * 359.97438 * 26 25 24 28 28 C 1.36631 * 120.52469 * 0.02562 * 27 26 25 29 29 C 1.39623 * 119.76341 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.47734 * 270.33739 * 1 2 3 31 31 H 1.09000 * 109.46970 * 30.34452 * 1 2 3 32 32 H 1.09006 * 109.47117 * 150.33948 * 1 2 3 33 33 H 1.07998 * 125.03560 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47534 * 144.70129 * 5 4 3 35 35 H 1.09006 * 109.46809 * 24.69693 * 5 4 3 36 36 H 1.08994 * 109.47267 * 270.00284 * 9 8 6 37 37 H 1.08999 * 109.47026 * 30.00296 * 9 8 6 38 38 H 1.09004 * 109.46616 * 149.99761 * 9 8 6 39 39 H 1.09002 * 111.00431 * 200.93440 * 12 10 8 40 40 H 1.08998 * 111.00251 * 324.74146 * 12 10 8 41 41 H 1.09006 * 110.49343 * 278.45627 * 13 12 10 42 42 H 1.08994 * 110.34749 * 156.06125 * 13 12 10 43 43 H 0.96995 * 120.00134 * 179.72744 * 18 17 15 44 44 H 1.08995 * 109.88447 * 120.70012 * 23 14 13 45 45 H 1.08996 * 109.87984 * 241.87123 * 23 14 13 46 46 H 1.08002 * 120.10688 * 359.96998 * 25 24 4 47 47 H 1.08000 * 119.66686 * 179.97438 * 26 25 24 48 48 H 1.07997 * 119.73727 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.11654 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6169 0.6888 -0.0032 5 6 4.7656 1.5980 -0.0081 6 6 5.2368 1.8046 -1.4245 7 8 4.6692 1.2469 -2.3398 8 7 6.2889 2.6092 -1.6742 9 6 6.9740 3.2833 -0.5686 10 6 6.7465 2.8105 -3.0512 11 1 6.1134 2.2671 -3.7525 12 6 6.7834 4.3214 -3.4021 13 6 8.1535 4.7429 -2.8091 14 7 9.0429 3.5960 -3.0685 15 6 10.4079 3.6498 -3.1619 16 1 10.9589 2.7925 -3.5194 17 6 11.0836 4.8061 -2.7968 18 7 10.4384 5.7835 -2.1960 19 14 12.9101 4.9721 -3.1515 20 1 13.6862 4.5577 -1.9553 21 1 13.2718 4.1047 -4.3013 22 1 13.2241 6.3858 -3.4799 23 6 8.2218 2.3840 -3.2042 24 6 3.6963 -0.6859 0.0046 25 6 4.7588 -1.5840 0.0101 26 6 4.5095 -2.9386 0.0182 27 6 3.2069 -3.4190 0.0214 28 6 2.1486 -2.5548 0.0161 29 6 2.3783 -1.1776 0.0068 30 1 -0.3634 0.0061 1.0276 31 1 -0.3633 0.8869 -0.5192 32 1 -0.3634 -0.8931 -0.5086 33 1 1.9635 2.1034 -0.0004 34 1 5.5728 1.1668 0.5840 35 1 4.4722 2.5563 0.4207 36 1 6.5082 4.2522 -0.3893 37 1 6.9000 2.6725 0.3311 38 1 8.0237 3.4265 -0.8251 39 1 6.7579 4.4726 -4.4813 40 1 5.9674 4.8555 -2.9155 41 1 8.0669 4.9209 -1.7372 42 1 8.5268 5.6341 -3.3135 43 1 10.9113 6.5898 -1.9373 44 1 8.3788 1.9378 -4.1861 45 1 8.4839 1.6695 -2.4238 46 1 5.7757 -1.2202 0.0079 47 1 5.3356 -3.6342 0.0220 48 1 3.0287 -4.4841 0.0282 49 1 1.1380 -2.9356 0.0183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033491966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:34 Heat of formation + Delta-G solvation = 68.856915 kcal Electronic energy + Delta-G solvation = -29828.076547 eV Core-core repulsion = 25949.983157 eV Total energy + Delta-G solvation = -3878.093390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.51420 -39.87446 -37.65057 -36.90104 -34.53277 -33.82734 -32.23472 -30.53179 -29.92588 -29.32390 -28.53622 -27.98460 -26.28335 -25.40671 -24.24286 -22.77117 -21.79398 -20.69320 -20.28312 -19.57149 -18.75801 -17.45484 -17.11088 -16.69340 -16.65239 -15.84073 -15.47879 -15.45674 -14.76744 -14.58245 -14.11209 -14.01526 -13.86122 -13.67284 -13.36141 -13.17090 -12.97845 -12.72047 -12.66833 -12.35789 -12.28416 -12.16459 -12.06313 -11.84846 -11.68216 -11.54310 -11.43397 -11.13134 -10.94280 -10.89322 -10.81908 -10.42744 -10.14021 -10.03988 -9.76056 -9.69642 -9.43001 -8.68425 -8.38901 -8.17068 -7.56511 -6.90482 -5.85053 -3.17717 1.12228 1.61868 2.45268 2.58682 2.71530 3.23250 3.33420 3.40251 3.41879 3.92011 4.41336 4.45008 4.51836 4.62271 4.69635 4.84697 4.94292 5.08937 5.21613 5.27248 5.29715 5.32302 5.37154 5.41713 5.50592 5.60448 5.61731 5.68268 5.72104 5.73146 5.79940 5.84800 5.91015 6.10055 6.14407 6.20489 6.24194 6.44575 6.47505 6.49188 6.59615 6.62136 6.73470 6.79215 6.89458 7.19079 7.22798 7.36294 7.45289 7.55752 7.68854 8.15230 8.20870 9.09706 9.70860 10.37654 11.28016 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.002469 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.490802 B =11339.469178 C =12033.977153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.177 4.177 3 C 0.060 3.940 4 N -0.466 5.466 5 C 0.093 3.907 6 C 0.490 3.510 7 O -0.530 6.530 8 N -0.590 5.590 9 C 0.063 3.937 10 C 0.127 3.873 11 H 0.099 0.901 12 C -0.156 4.156 13 C 0.165 3.835 14 N -0.602 5.602 15 C -0.229 4.229 16 H 0.075 0.925 17 C -0.005 4.005 18 N -0.919 5.919 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.281 1.281 22 H -0.290 1.290 23 C 0.127 3.873 24 C 0.112 3.888 25 C -0.124 4.124 26 C -0.102 4.102 27 C -0.150 4.150 28 C -0.073 4.073 29 C -0.102 4.102 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.165 0.835 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.253 0.747 44 H 0.034 0.966 45 H 0.027 0.973 46 H 0.116 0.884 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.936 -9.879 8.142 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.184 4.184 3 C -0.064 4.064 4 N -0.148 5.148 5 C -0.032 4.032 6 C 0.276 3.724 7 O -0.407 6.407 8 N -0.323 5.323 9 C -0.079 4.079 10 C 0.023 3.977 11 H 0.117 0.883 12 C -0.196 4.196 13 C 0.041 3.959 14 N -0.329 5.329 15 C -0.358 4.358 16 H 0.093 0.907 17 C -0.202 4.202 18 N -0.566 5.566 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.206 1.206 22 H -0.216 1.216 23 C 0.000 4.000 24 C 0.007 3.993 25 C -0.144 4.144 26 C -0.121 4.121 27 C -0.169 4.169 28 C -0.092 4.092 29 C -0.107 4.107 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.182 0.818 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.134 0.866 47 H 0.141 0.859 48 H 0.137 0.863 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.803 -9.771 7.687 20.902 hybrid contribution 1.294 0.389 -0.147 1.359 sum -15.509 -9.382 7.539 19.632 Atomic orbital electron populations 1.20047 0.89557 1.02090 1.01315 1.20201 0.95067 0.90765 1.12410 1.21524 0.81562 0.99151 1.04172 1.43337 1.05011 1.03755 1.62703 1.21653 0.89498 0.95847 0.96234 1.20826 0.80679 0.79722 0.91175 1.90738 1.55953 1.48093 1.45871 1.47826 1.30250 1.45757 1.08443 1.22204 1.01466 0.96339 0.87898 1.22137 0.96063 0.97759 0.81695 0.88258 1.23388 1.00698 0.94243 1.01228 1.21670 0.84635 0.91733 0.97903 1.44521 1.02131 1.01556 1.84645 1.19010 0.80390 0.99534 1.36844 0.90681 1.24799 0.98104 0.97289 0.99977 1.69930 1.34938 1.07570 1.44131 0.86127 0.84749 0.77084 0.77948 1.21613 1.20606 1.21607 1.21635 0.88684 0.91137 0.98504 1.18174 0.95480 0.82560 1.03128 1.20038 0.96619 0.92331 1.05418 1.20764 0.96962 0.94052 1.00338 1.20575 0.92479 0.99278 1.04601 1.20191 0.98850 0.90860 0.99250 1.19052 0.91800 0.93183 1.06649 0.92138 0.92045 0.91986 0.81816 0.86803 0.86328 0.92349 0.92340 0.87205 0.90958 0.91956 0.94499 0.91345 0.93667 0.94852 0.95512 0.86637 0.85943 0.86297 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.41 36.00 0.37 -0.27 16 2 C -0.18 -2.15 6.32 -102.71 -0.65 -2.80 16 3 C 0.06 0.72 11.19 -16.73 -0.19 0.53 16 4 N -0.47 -6.08 2.27 -115.71 -0.26 -6.34 16 5 C 0.09 1.06 5.03 -5.20 -0.03 1.03 16 6 C 0.49 7.47 7.74 -10.98 -0.09 7.39 16 7 O -0.53 -10.16 15.80 5.56 0.09 -10.07 16 8 N -0.59 -9.16 2.82 -171.84 -0.49 -9.65 16 9 C 0.06 0.89 8.33 59.85 0.50 1.39 16 10 C 0.13 2.26 3.58 -66.10 -0.24 2.02 16 11 H 0.10 1.83 7.00 -51.93 -0.36 1.46 16 12 C -0.16 -2.82 6.54 -24.47 -0.16 -2.98 16 13 C 0.17 3.65 4.55 -2.41 -0.01 3.64 16 14 N -0.60 -14.39 2.97 -169.93 -0.51 -14.90 16 15 C -0.23 -6.11 10.24 -15.06 -0.15 -6.26 16 16 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 17 C -0.01 -0.13 5.40 -17.43 -0.09 -0.23 16 18 N -0.92 -25.35 10.68 55.49 0.59 -24.76 16 19 Si 0.91 21.32 29.56 -169.99 -5.03 16.29 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.13 2.60 6.25 -3.06 -0.02 2.58 16 24 C 0.11 1.60 6.80 -83.98 -0.57 1.03 16 25 C -0.12 -1.64 10.00 -39.43 -0.39 -2.03 16 26 C -0.10 -1.18 10.01 -39.54 -0.40 -1.58 16 27 C -0.15 -1.65 9.97 -39.94 -0.40 -2.05 16 28 C -0.07 -0.86 10.05 -39.65 -0.40 -1.26 16 29 C -0.10 -1.39 6.35 -105.13 -0.67 -2.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.11 1.10 7.40 -51.93 -0.38 0.72 16 35 H 0.12 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.06 0.75 7.98 -51.93 -0.41 0.33 16 37 H 0.06 0.63 6.44 -51.93 -0.33 0.29 16 38 H 0.11 2.00 5.18 -51.93 -0.27 1.73 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.04 0.83 5.43 -51.93 -0.28 0.55 16 42 H 0.07 1.73 6.95 -51.93 -0.36 1.37 16 43 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 46 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 48 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 49 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -32.46 392.00 -10.71 -43.17 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.44 Total: 2.26 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.57 Total: -1.91 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.66 Total: -55.64 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.46 -10.71 -43.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033491966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.024 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds