Wall clock time and date at job start Wed Apr 1 2020 00:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34235 * 126.50464 * 2 1 4 4 N 1.36828 * 109.93340 * 180.14463 * 3 2 1 5 5 C 1.46497 * 125.06648 * 179.81476 * 4 3 2 6 6 C 1.50697 * 109.47363 * 264.70073 * 5 4 3 7 7 O 1.21282 * 119.99768 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00286 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99647 * 359.97438 * 8 6 5 10 10 C 1.46494 * 119.99995 * 180.02562 * 8 6 5 11 11 H 1.09000 * 110.78382 * 1.78287 * 10 8 6 12 12 C 1.55156 * 110.72065 * 125.02488 * 10 8 6 13 13 C 1.55125 * 101.48891 * 82.69522 * 12 10 8 14 14 N 1.47430 * 104.72361 * 37.29342 * 13 12 10 15 15 C 1.36931 * 125.64936 * 155.81521 * 14 13 12 16 16 H 1.08001 * 119.99956 * 190.42861 * 15 14 13 17 17 C 1.38809 * 120.00060 * 10.44191 * 15 14 13 18 18 N 1.31627 * 119.99977 * 9.05928 * 17 15 14 19 19 Si 1.86804 * 120.00193 * 188.79424 * 17 15 14 20 20 H 1.48497 * 109.46716 * 265.28296 * 19 17 15 21 21 H 1.48502 * 109.46744 * 25.28199 * 19 17 15 22 22 H 1.48491 * 109.47371 * 145.28577 * 19 17 15 23 23 C 1.47027 * 108.70230 * 335.55882 * 14 13 12 24 24 C 1.37692 * 109.87520 * 359.55587 * 4 3 2 25 25 C 1.39124 * 133.51334 * 180.26645 * 24 4 3 26 26 C 1.37745 * 119.77951 * 179.97438 * 25 24 4 27 27 C 1.38834 * 120.66984 * 359.97438 * 26 25 24 28 28 C 1.36631 * 120.52469 * 0.02562 * 27 26 25 29 29 C 1.39623 * 119.76341 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.47734 * 270.33739 * 1 2 3 31 31 H 1.09000 * 109.46970 * 30.34452 * 1 2 3 32 32 H 1.09006 * 109.47117 * 150.33948 * 1 2 3 33 33 H 1.07998 * 125.03560 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47534 * 144.70129 * 5 4 3 35 35 H 1.09006 * 109.46809 * 24.69693 * 5 4 3 36 36 H 1.08994 * 109.47267 * 270.00284 * 9 8 6 37 37 H 1.08999 * 109.47026 * 30.00296 * 9 8 6 38 38 H 1.09004 * 109.46616 * 149.99761 * 9 8 6 39 39 H 1.09002 * 111.00431 * 200.93440 * 12 10 8 40 40 H 1.08998 * 111.00251 * 324.74146 * 12 10 8 41 41 H 1.09006 * 110.49343 * 278.45627 * 13 12 10 42 42 H 1.08994 * 110.34749 * 156.06125 * 13 12 10 43 43 H 0.96995 * 120.00134 * 179.72744 * 18 17 15 44 44 H 1.08995 * 109.88447 * 120.70012 * 23 14 13 45 45 H 1.08996 * 109.87984 * 241.87123 * 23 14 13 46 46 H 1.08002 * 120.10688 * 359.96998 * 25 24 4 47 47 H 1.08000 * 119.66686 * 179.97438 * 26 25 24 48 48 H 1.07997 * 119.73727 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.11654 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6169 0.6888 -0.0032 5 6 4.7656 1.5980 -0.0081 6 6 5.2368 1.8046 -1.4245 7 8 4.6692 1.2469 -2.3398 8 7 6.2889 2.6092 -1.6742 9 6 6.9740 3.2833 -0.5686 10 6 6.7465 2.8105 -3.0512 11 1 6.1134 2.2671 -3.7525 12 6 6.7834 4.3214 -3.4021 13 6 8.1535 4.7429 -2.8091 14 7 9.0429 3.5960 -3.0685 15 6 10.4079 3.6498 -3.1619 16 1 10.9589 2.7925 -3.5194 17 6 11.0836 4.8061 -2.7968 18 7 10.4384 5.7835 -2.1960 19 14 12.9101 4.9721 -3.1515 20 1 13.6862 4.5577 -1.9553 21 1 13.2718 4.1047 -4.3013 22 1 13.2241 6.3858 -3.4799 23 6 8.2218 2.3840 -3.2042 24 6 3.6963 -0.6859 0.0046 25 6 4.7588 -1.5840 0.0101 26 6 4.5095 -2.9386 0.0182 27 6 3.2069 -3.4190 0.0214 28 6 2.1486 -2.5548 0.0161 29 6 2.3783 -1.1776 0.0068 30 1 -0.3634 0.0061 1.0276 31 1 -0.3633 0.8869 -0.5192 32 1 -0.3634 -0.8931 -0.5086 33 1 1.9635 2.1034 -0.0004 34 1 5.5728 1.1668 0.5840 35 1 4.4722 2.5563 0.4207 36 1 6.5082 4.2522 -0.3893 37 1 6.9000 2.6725 0.3311 38 1 8.0237 3.4265 -0.8251 39 1 6.7579 4.4726 -4.4813 40 1 5.9674 4.8555 -2.9155 41 1 8.0669 4.9209 -1.7372 42 1 8.5268 5.6341 -3.3135 43 1 10.9113 6.5898 -1.9373 44 1 8.3788 1.9378 -4.1861 45 1 8.4839 1.6695 -2.4238 46 1 5.7757 -1.2202 0.0079 47 1 5.3356 -3.6342 0.0220 48 1 3.0287 -4.4841 0.0282 49 1 1.1380 -2.9356 0.0183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033491966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:33 Heat of formation + Delta-G solvation = 52.599519 kcal Electronic energy + Delta-G solvation = -29828.781521 eV Core-core repulsion = 25949.983157 eV Total energy + Delta-G solvation = -3878.798364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.42151 -41.15217 -39.11006 -37.83632 -36.03290 -34.75987 -33.97825 -31.61388 -31.02033 -30.64906 -29.80873 -29.15487 -27.64593 -26.56721 -25.81566 -23.68600 -22.81636 -22.13102 -21.83179 -20.45562 -20.04708 -18.93581 -18.62049 -17.81931 -17.53453 -17.13329 -16.72477 -16.60057 -16.30026 -15.81014 -15.62162 -15.14236 -14.96290 -14.71908 -14.55751 -14.22499 -13.97320 -13.91170 -13.65794 -13.58481 -13.55401 -13.37652 -13.32980 -13.07327 -12.92380 -12.91438 -12.77862 -12.45527 -12.43614 -12.21395 -12.09969 -11.91173 -11.86880 -11.67494 -11.59267 -10.94391 -10.65088 -10.37848 -9.72569 -9.07795 -8.85420 -8.43791 -7.89204 -5.22702 0.23149 0.70653 1.41969 1.46243 1.47993 1.50354 1.56662 1.85665 2.11356 2.48664 3.00946 3.31195 3.36400 3.66895 3.70081 3.74972 3.83039 3.91050 3.96403 4.04985 4.11716 4.24058 4.28184 4.29157 4.46701 4.49531 4.58572 4.63327 4.65205 4.67304 4.84738 4.87658 4.88970 4.90255 4.98835 4.99526 5.03316 5.11329 5.22703 5.33426 5.43819 5.48753 5.60286 5.60904 5.71992 5.75701 5.88320 5.93028 6.19170 6.26518 6.32965 6.42871 7.00600 7.08845 7.73936 8.40410 9.22140 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.002469 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.490802 B =11339.469178 C =12033.977153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.191 4.191 3 C 0.049 3.951 4 N -0.473 5.473 5 C 0.098 3.902 6 C 0.493 3.507 7 O -0.573 6.573 8 N -0.590 5.590 9 C 0.068 3.932 10 C 0.139 3.861 11 H 0.096 0.904 12 C -0.140 4.140 13 C 0.174 3.826 14 N -0.617 5.617 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.053 4.053 18 N -0.939 5.939 19 Si 0.971 3.029 20 H -0.286 1.286 21 H -0.275 1.275 22 H -0.293 1.293 23 C 0.129 3.871 24 C 0.084 3.916 25 C -0.146 4.146 26 C -0.107 4.107 27 C -0.154 4.154 28 C -0.082 4.082 29 C -0.129 4.129 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.192 0.808 34 H 0.132 0.868 35 H 0.156 0.844 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.249 0.751 44 H 0.029 0.971 45 H 0.022 0.978 46 H 0.115 0.885 47 H 0.143 0.857 48 H 0.146 0.854 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 -10.404 9.220 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.198 4.198 3 C -0.075 4.075 4 N -0.156 5.156 5 C -0.027 4.027 6 C 0.281 3.719 7 O -0.452 6.452 8 N -0.322 5.322 9 C -0.074 4.074 10 C 0.035 3.965 11 H 0.115 0.885 12 C -0.179 4.179 13 C 0.049 3.951 14 N -0.344 5.344 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.247 4.247 18 N -0.587 5.587 19 Si 0.800 3.200 20 H -0.213 1.213 21 H -0.201 1.201 22 H -0.219 1.219 23 C 0.003 3.997 24 C -0.021 4.021 25 C -0.167 4.167 26 C -0.126 4.126 27 C -0.173 4.173 28 C -0.100 4.100 29 C -0.134 4.134 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.209 0.791 34 H 0.150 0.850 35 H 0.173 0.827 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.040 0.960 46 H 0.133 0.867 47 H 0.160 0.840 48 H 0.164 0.836 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.124 -10.308 8.780 22.623 hybrid contribution 1.686 0.463 -0.490 1.816 sum -16.437 -9.845 8.290 20.876 Atomic orbital electron populations 1.20094 0.87594 1.02693 1.02303 1.20658 0.96568 0.90414 1.12167 1.22062 0.81200 1.00463 1.03746 1.43495 1.05722 1.03531 1.62808 1.21815 0.89875 0.97568 0.93434 1.21497 0.79670 0.78239 0.92489 1.90721 1.57260 1.49543 1.47654 1.47834 1.30572 1.46060 1.07721 1.22193 0.98785 0.97962 0.88483 1.21824 0.94069 0.97177 0.83474 0.88550 1.23234 0.98860 0.94446 1.01337 1.21497 0.86183 0.89940 0.97445 1.44697 1.01890 1.03271 1.84503 1.19272 0.81961 0.99557 1.36572 0.91046 1.25497 1.01773 0.97158 1.00265 1.70086 1.36038 1.07693 1.44895 0.85183 0.80390 0.76631 0.77795 1.21278 1.20053 1.21922 1.21668 0.90136 0.89950 0.97964 1.18513 0.96105 0.83478 1.04035 1.20243 0.96634 0.93169 1.06658 1.21112 0.98120 0.93929 0.99475 1.20937 0.92039 1.00666 1.03616 1.20537 1.00178 0.90539 0.98788 1.19508 0.92203 0.94399 1.07261 0.90883 0.90948 0.91860 0.79141 0.85035 0.82656 0.90742 0.88621 0.91363 0.90768 0.89677 0.94886 0.95111 0.94136 0.95277 0.96003 0.86661 0.83955 0.83631 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.41 71.23 0.74 -0.35 16 2 C -0.19 -4.37 6.32 -18.63 -0.12 -4.48 16 3 C 0.05 1.07 11.19 83.00 0.93 2.00 16 4 N -0.47 -11.59 2.27 -520.00 -1.18 -12.77 16 5 C 0.10 1.97 5.03 85.63 0.43 2.40 16 6 C 0.49 14.23 7.74 87.66 0.68 14.90 16 7 O -0.57 -21.58 15.80 -3.04 -0.05 -21.63 16 8 N -0.59 -17.45 2.82 -815.96 -2.30 -19.75 16 9 C 0.07 1.77 8.33 127.77 1.06 2.84 16 10 C 0.14 4.88 3.58 46.18 0.17 5.04 16 11 H 0.10 3.50 7.00 -2.39 -0.02 3.49 16 12 C -0.14 -4.93 6.54 32.06 0.21 -4.72 16 13 C 0.17 7.79 4.55 86.93 0.40 8.18 16 14 N -0.62 -30.03 2.97 -691.53 -2.06 -32.08 16 15 C -0.24 -13.24 10.24 84.03 0.86 -12.38 16 16 H 0.07 3.81 7.84 -2.91 -0.02 3.79 16 17 C -0.05 -2.85 5.40 84.86 0.46 -2.40 16 18 N -0.94 -52.71 10.68 21.65 0.23 -52.48 16 19 Si 0.97 44.22 29.56 68.60 2.03 46.25 16 20 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 C 0.13 5.33 6.25 86.73 0.54 5.87 16 24 C 0.08 2.34 6.80 39.03 0.27 2.61 16 25 C -0.15 -3.83 10.00 22.37 0.22 -3.61 16 26 C -0.11 -2.39 10.01 22.30 0.22 -2.17 16 27 C -0.15 -3.15 9.97 22.04 0.22 -2.93 16 28 C -0.08 -1.84 10.05 22.23 0.22 -1.61 16 29 C -0.13 -3.41 6.35 -20.20 -0.13 -3.53 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 34 H 0.13 2.18 7.40 -2.39 -0.02 2.17 16 35 H 0.16 1.96 8.08 -2.38 -0.02 1.94 16 36 H 0.07 1.72 7.98 -2.39 -0.02 1.70 16 37 H 0.10 1.76 6.44 -2.39 -0.02 1.75 16 38 H 0.07 2.45 5.18 -2.38 -0.01 2.43 16 39 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.03 1.51 5.43 -2.38 -0.01 1.50 16 42 H 0.03 1.59 6.95 -2.39 -0.02 1.58 16 43 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.02 0.93 8.04 -2.39 -0.02 0.91 16 46 H 0.12 2.85 8.06 -2.91 -0.02 2.82 16 47 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 48 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 49 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -72.23 392.00 5.00 -67.23 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.94 Total: 19.58 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 7.38 Total: 5.65 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -5.31 Total: -117.08 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.63 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -72.23 5.00 -67.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033491966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.830 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds