Wall clock time and date at job start Wed Apr 1 2020 00:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47056 * 2 1 4 4 C 1.37809 * 120.03747 * 264.97407 * 3 2 1 5 5 C 1.38706 * 120.63825 * 180.02562 * 4 3 2 6 6 C 1.37797 * 120.30271 * 0.02562 * 5 4 3 7 7 C 1.39238 * 119.66614 * 359.69475 * 6 5 4 8 8 C 1.47449 * 134.00657 * 179.57434 * 7 6 5 9 9 C 1.46905 * 126.76825 * 0.75595 * 8 7 6 10 10 O 1.21673 * 120.00112 * 34.93783 * 9 8 7 11 11 N 1.34776 * 120.00034 * 214.94073 * 9 8 7 12 12 C 1.46503 * 119.99838 * 355.68686 * 11 9 8 13 13 C 1.46503 * 120.00139 * 175.69497 * 11 9 8 14 14 H 1.08999 * 110.88965 * 3.87457 * 13 11 9 15 15 C 1.55163 * 111.00181 * 239.99852 * 13 11 9 16 16 C 1.54324 * 102.94167 * 206.42486 * 15 13 11 17 17 N 1.47019 * 107.27203 * 22.19044 * 16 15 13 18 18 C 1.36939 * 125.65092 * 181.02629 * 17 16 15 19 19 H 1.07997 * 120.00250 * 185.05476 * 18 17 16 20 20 C 1.38810 * 119.99419 * 5.05568 * 18 17 16 21 21 N 1.31618 * 120.00343 * 5.08060 * 20 18 17 22 22 Si 1.86808 * 119.99672 * 184.81214 * 20 18 17 23 23 H 1.48503 * 109.46556 * 265.27215 * 22 20 18 24 24 H 1.48496 * 109.46947 * 25.27371 * 22 20 18 25 25 H 1.48493 * 109.46989 * 145.27401 * 22 20 18 26 26 C 1.47422 * 108.70432 * 1.28924 * 17 16 15 27 27 C 1.36370 * 106.46204 * 180.48957 * 8 7 6 28 28 N 1.35473 * 109.77981 * 0.26057 * 27 8 7 29 29 H 0.97001 * 124.78389 * 179.97438 * 28 27 8 30 30 C 1.37963 * 110.42563 * 0.02562 * 28 27 8 31 31 H 1.09007 * 109.47240 * 300.00665 * 1 2 3 32 32 H 1.09003 * 109.47367 * 59.99789 * 1 2 3 33 33 H 1.08997 * 109.47576 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47134 * 239.99899 * 2 1 3 35 35 H 1.08996 * 109.46689 * 119.99675 * 2 1 3 36 36 H 1.08004 * 119.68138 * 0.02718 * 4 3 2 37 37 H 1.08000 * 119.85070 * 180.02562 * 5 4 3 38 38 H 1.07997 * 120.16956 * 179.97438 * 6 5 4 39 39 H 1.08996 * 109.47373 * 275.43089 * 12 11 9 40 40 H 1.08996 * 109.46866 * 35.43115 * 12 11 9 41 41 H 1.09005 * 109.46873 * 155.43041 * 12 11 9 42 42 H 1.09003 * 110.71921 * 88.05616 * 15 13 11 43 43 H 1.09006 * 110.86951 * 324.85451 * 15 13 11 44 44 H 1.09003 * 109.87712 * 262.77284 * 16 15 13 45 45 H 1.09002 * 110.01250 * 141.68282 * 16 15 13 46 46 H 0.96999 * 119.99876 * 179.72679 * 21 20 18 47 47 H 1.08996 * 110.36890 * 94.48021 * 26 17 16 48 48 H 1.09003 * 110.36766 * 216.80813 * 26 17 16 49 49 H 1.07999 * 125.11025 * 180.24488 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0363 -1.1884 5 6 2.8248 3.3434 -1.2029 6 6 2.9640 4.0448 -0.0250 7 6 2.6303 3.4371 1.1825 8 6 2.6602 3.8723 2.5910 9 6 3.0788 5.1866 3.0966 10 8 2.8469 6.1898 2.4484 11 7 3.7198 5.2810 4.2784 12 6 3.9155 4.0861 5.1032 13 6 4.2207 6.5787 4.7385 14 1 3.9362 7.3722 4.0475 15 6 5.7588 6.5415 4.9397 16 6 5.9943 7.6321 6.0058 17 7 4.7255 7.8218 6.7239 18 6 4.5077 8.7176 7.7365 19 1 3.5614 8.7248 8.2569 20 6 5.5034 9.6162 8.0942 21 7 6.6179 9.6757 7.3965 22 14 5.2584 10.7465 9.5612 23 1 4.7298 12.0539 9.0958 24 1 4.2924 10.1297 10.5054 25 1 6.5583 10.9543 10.2484 26 6 3.7282 6.8836 6.1776 27 6 2.2171 2.8162 3.3313 28 7 1.9241 1.7752 2.5154 29 1 1.5916 0.9144 2.8142 30 6 2.1664 2.1118 1.1995 31 1 -0.3634 0.5140 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 2.2558 1.4958 -2.1176 37 1 3.0781 3.8135 -2.1416 38 1 3.3259 5.0622 -0.0387 39 1 3.0267 3.9139 5.7101 40 1 4.0879 3.2242 4.4587 41 1 4.7776 4.2312 5.7543 42 1 6.2751 6.7904 4.0126 43 1 6.0787 5.5667 5.3080 44 1 6.2904 8.5638 5.5238 45 1 6.7699 7.3121 6.7017 46 1 7.3120 10.3064 7.6440 47 1 3.6999 5.9710 6.7727 48 1 2.7435 7.3503 6.1501 49 1 2.1152 2.8105 4.4065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033689920.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:05 Heat of formation + Delta-G solvation = 53.613139 kcal Electronic energy + Delta-G solvation = -29410.211457 eV Core-core repulsion = 25531.457047 eV Total energy + Delta-G solvation = -3878.754410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.73581 -39.47176 -37.49245 -37.11718 -34.73308 -34.55681 -32.22927 -31.00714 -29.59844 -29.19643 -28.78454 -27.37408 -26.68115 -24.55551 -24.26319 -22.78213 -22.02924 -21.84891 -20.08943 -19.72883 -18.63512 -17.94857 -16.96190 -16.89256 -16.14953 -15.83889 -15.37367 -15.27542 -14.90876 -14.60926 -14.49695 -14.21676 -14.01436 -13.78310 -13.52722 -13.29373 -13.06539 -12.73337 -12.69137 -12.35869 -12.25134 -12.20595 -11.94260 -11.79886 -11.71879 -11.62351 -11.35552 -10.97621 -10.91183 -10.81751 -10.75211 -10.24253 -10.07257 -9.81830 -9.76083 -9.68383 -9.52075 -8.61532 -8.47196 -8.27893 -7.83894 -6.81412 -5.68425 -3.04624 0.83395 1.40807 1.98850 2.75228 3.14479 3.38314 3.42164 3.47125 3.49040 3.76962 4.36158 4.46498 4.52531 4.55866 4.67766 4.80323 4.94135 4.97157 5.13247 5.21044 5.22978 5.30741 5.34461 5.39002 5.47112 5.49502 5.54054 5.56168 5.64371 5.71155 5.72721 5.77207 5.79912 5.91798 5.94065 6.24952 6.28993 6.33072 6.35975 6.45948 6.52874 6.55111 6.62623 6.75025 6.91916 7.04300 7.15433 7.50645 7.66062 7.70156 7.85369 8.27791 8.48944 9.22515 9.83079 10.48411 11.41482 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.029581 B = 0.002172 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.320126 B =12890.434601 C =13323.475595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.093 4.093 4 C -0.101 4.101 5 C -0.139 4.139 6 C -0.067 4.067 7 C -0.062 4.062 8 C -0.214 4.214 9 C 0.586 3.414 10 O -0.540 6.540 11 N -0.598 5.598 12 C 0.071 3.929 13 C 0.125 3.875 14 H 0.108 0.892 15 C -0.152 4.152 16 C 0.175 3.825 17 N -0.602 5.602 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.281 1.281 25 H -0.290 1.290 26 C 0.131 3.869 27 C 0.097 3.903 28 N -0.581 5.581 29 H 0.417 0.583 30 C 0.093 3.907 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.033 0.967 46 H 0.252 0.748 47 H 0.022 0.978 48 H 0.041 0.959 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -23.594 -14.182 29.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.120 4.120 5 C -0.158 4.158 6 C -0.085 4.085 7 C -0.066 4.066 8 C -0.225 4.225 9 C 0.375 3.625 10 O -0.418 6.418 11 N -0.330 5.330 12 C -0.072 4.072 13 C 0.022 3.978 14 H 0.126 0.874 15 C -0.191 4.191 16 C 0.050 3.950 17 N -0.329 5.329 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.567 5.567 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.207 1.207 25 H -0.217 1.217 26 C 0.004 3.996 27 C -0.035 4.035 28 N -0.182 5.182 29 H 0.254 0.746 30 C -0.013 4.013 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.063 0.937 47 H 0.039 0.961 48 H 0.059 0.941 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.180 -22.977 -14.351 28.604 hybrid contribution -0.161 0.171 1.114 1.139 sum -9.340 -22.806 -13.237 27.975 Atomic orbital electron populations 1.21770 0.94783 1.01579 1.02399 1.20448 0.96077 0.92655 1.02685 1.18808 1.04439 0.96125 0.90192 1.20696 0.99828 0.95145 0.96314 1.20928 1.02377 0.94683 0.97833 1.20649 0.97620 0.99960 0.90297 1.18723 1.02918 0.92683 0.92280 1.20055 1.14889 0.95171 0.92365 1.17277 0.77397 0.87409 0.80431 1.90782 1.55864 1.37426 1.57743 1.47664 1.56573 1.09312 1.19410 1.21990 1.02129 0.87626 0.95480 1.22505 0.94218 0.83878 0.97211 0.87430 1.23225 0.94697 1.00626 1.00568 1.21204 0.88201 0.94819 0.90790 1.44391 1.06772 1.41275 1.40461 1.19048 0.99843 1.09217 1.07514 0.90421 1.24830 0.96767 0.99221 0.99647 1.69955 1.07542 1.39001 1.40239 0.86091 0.76867 0.80749 0.81996 1.21591 1.20666 1.21680 1.21806 0.93618 0.93572 0.90604 1.22386 0.98354 0.86234 0.96489 1.41502 1.57335 1.14613 1.04791 0.74551 1.17993 1.03925 0.94774 0.84586 0.92942 0.92186 0.92406 0.90628 0.91855 0.85809 0.85766 0.85297 0.92766 0.91199 0.90144 0.91886 0.92258 0.91979 0.94856 0.93734 0.96070 0.94052 0.79994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.08 -0.49 6.07 -27.89 -0.17 -0.66 16 3 C -0.09 -0.84 5.15 -104.47 -0.54 -1.38 16 4 C -0.10 -0.91 9.64 -39.57 -0.38 -1.29 16 5 C -0.14 -1.44 10.03 -39.57 -0.40 -1.84 16 6 C -0.07 -0.87 10.09 -39.37 -0.40 -1.27 16 7 C -0.06 -0.83 6.34 -104.95 -0.67 -1.49 16 8 C -0.21 -2.90 5.59 -103.31 -0.58 -3.48 16 9 C 0.59 9.87 7.60 -12.75 -0.10 9.78 16 10 O -0.54 -11.21 16.48 5.21 0.09 -11.13 16 11 N -0.60 -9.40 2.91 -172.79 -0.50 -9.90 16 12 C 0.07 0.81 7.57 59.85 0.45 1.26 16 13 C 0.13 2.41 3.46 -65.66 -0.23 2.18 16 14 H 0.11 2.34 7.02 -51.93 -0.36 1.97 16 15 C -0.15 -2.94 6.49 -24.89 -0.16 -3.10 16 16 C 0.17 4.29 5.42 -3.07 -0.02 4.28 16 17 N -0.60 -15.58 3.39 -169.94 -0.58 -16.15 16 18 C -0.23 -6.42 10.27 -15.06 -0.15 -6.57 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.24 5.47 -17.43 -0.10 -0.33 16 21 N -0.92 -27.25 10.39 55.49 0.58 -26.68 16 22 Si 0.91 22.27 29.56 -169.99 -5.02 17.24 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 C 0.13 2.78 6.79 -2.41 -0.02 2.76 16 27 C 0.10 0.90 9.55 -16.62 -0.16 0.74 16 28 N -0.58 -4.61 5.99 -10.49 -0.06 -4.67 16 29 H 0.42 1.89 8.96 -40.82 -0.37 1.52 16 30 C 0.09 0.98 6.94 -83.97 -0.58 0.39 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.39 8.05 -51.93 -0.42 -0.03 16 35 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 36 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.05 0.51 7.28 -51.93 -0.38 0.13 16 40 H 0.07 0.65 5.84 -51.93 -0.30 0.35 16 41 H 0.08 0.97 6.37 -51.93 -0.33 0.64 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.03 6.48 -51.93 -0.34 0.69 16 44 H 0.06 1.71 6.97 -51.93 -0.36 1.35 16 45 H 0.03 0.88 7.88 -51.93 -0.41 0.47 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 47 H 0.02 0.42 6.95 -51.93 -0.36 0.06 16 48 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.18 1.16 5.99 -52.49 -0.31 0.85 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -35.04 389.34 -10.75 -45.78 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.29 Total: 0.14 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -3.82 Total: -0.49 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.57 Total: -57.41 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.04 -10.75 -45.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033689920.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.394 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds