Wall clock time and date at job start Wed Apr 1 2020 00:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47056 * 2 1 4 4 C 1.37809 * 120.03747 * 264.97407 * 3 2 1 5 5 C 1.38706 * 120.63825 * 180.02562 * 4 3 2 6 6 C 1.37797 * 120.30271 * 0.02562 * 5 4 3 7 7 C 1.39238 * 119.66614 * 359.69475 * 6 5 4 8 8 C 1.47449 * 134.00657 * 179.57434 * 7 6 5 9 9 C 1.46905 * 126.76825 * 0.75595 * 8 7 6 10 10 O 1.21673 * 120.00112 * 34.93783 * 9 8 7 11 11 N 1.34776 * 120.00034 * 214.94073 * 9 8 7 12 12 C 1.46503 * 119.99838 * 355.68686 * 11 9 8 13 13 C 1.46503 * 120.00139 * 175.69497 * 11 9 8 14 14 H 1.08999 * 110.88965 * 3.87457 * 13 11 9 15 15 C 1.55163 * 111.00181 * 239.99852 * 13 11 9 16 16 C 1.54324 * 102.94167 * 206.42486 * 15 13 11 17 17 N 1.47019 * 107.27203 * 22.19044 * 16 15 13 18 18 C 1.36939 * 125.65092 * 181.02629 * 17 16 15 19 19 H 1.07997 * 120.00250 * 185.05476 * 18 17 16 20 20 C 1.38810 * 119.99419 * 5.05568 * 18 17 16 21 21 N 1.31618 * 120.00343 * 5.08060 * 20 18 17 22 22 Si 1.86808 * 119.99672 * 184.81214 * 20 18 17 23 23 H 1.48503 * 109.46556 * 265.27215 * 22 20 18 24 24 H 1.48496 * 109.46947 * 25.27371 * 22 20 18 25 25 H 1.48493 * 109.46989 * 145.27401 * 22 20 18 26 26 C 1.47422 * 108.70432 * 1.28924 * 17 16 15 27 27 C 1.36370 * 106.46204 * 180.48957 * 8 7 6 28 28 N 1.35473 * 109.77981 * 0.26057 * 27 8 7 29 29 H 0.97001 * 124.78389 * 179.97438 * 28 27 8 30 30 C 1.37963 * 110.42563 * 0.02562 * 28 27 8 31 31 H 1.09007 * 109.47240 * 300.00665 * 1 2 3 32 32 H 1.09003 * 109.47367 * 59.99789 * 1 2 3 33 33 H 1.08997 * 109.47576 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47134 * 239.99899 * 2 1 3 35 35 H 1.08996 * 109.46689 * 119.99675 * 2 1 3 36 36 H 1.08004 * 119.68138 * 0.02718 * 4 3 2 37 37 H 1.08000 * 119.85070 * 180.02562 * 5 4 3 38 38 H 1.07997 * 120.16956 * 179.97438 * 6 5 4 39 39 H 1.08996 * 109.47373 * 275.43089 * 12 11 9 40 40 H 1.08996 * 109.46866 * 35.43115 * 12 11 9 41 41 H 1.09005 * 109.46873 * 155.43041 * 12 11 9 42 42 H 1.09003 * 110.71921 * 88.05616 * 15 13 11 43 43 H 1.09006 * 110.86951 * 324.85451 * 15 13 11 44 44 H 1.09003 * 109.87712 * 262.77284 * 16 15 13 45 45 H 1.09002 * 110.01250 * 141.68282 * 16 15 13 46 46 H 0.96999 * 119.99876 * 179.72679 * 21 20 18 47 47 H 1.08996 * 110.36890 * 94.48021 * 26 17 16 48 48 H 1.09003 * 110.36766 * 216.80813 * 26 17 16 49 49 H 1.07999 * 125.11025 * 180.24488 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0363 -1.1884 5 6 2.8248 3.3434 -1.2029 6 6 2.9640 4.0448 -0.0250 7 6 2.6303 3.4371 1.1825 8 6 2.6602 3.8723 2.5910 9 6 3.0788 5.1866 3.0966 10 8 2.8469 6.1898 2.4484 11 7 3.7198 5.2810 4.2784 12 6 3.9155 4.0861 5.1032 13 6 4.2207 6.5787 4.7385 14 1 3.9362 7.3722 4.0475 15 6 5.7588 6.5415 4.9397 16 6 5.9943 7.6321 6.0058 17 7 4.7255 7.8218 6.7239 18 6 4.5077 8.7176 7.7365 19 1 3.5614 8.7248 8.2569 20 6 5.5034 9.6162 8.0942 21 7 6.6179 9.6757 7.3965 22 14 5.2584 10.7465 9.5612 23 1 4.7298 12.0539 9.0958 24 1 4.2924 10.1297 10.5054 25 1 6.5583 10.9543 10.2484 26 6 3.7282 6.8836 6.1776 27 6 2.2171 2.8162 3.3313 28 7 1.9241 1.7752 2.5154 29 1 1.5916 0.9144 2.8142 30 6 2.1664 2.1118 1.1995 31 1 -0.3634 0.5140 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 2.2558 1.4958 -2.1176 37 1 3.0781 3.8135 -2.1416 38 1 3.3259 5.0622 -0.0387 39 1 3.0267 3.9139 5.7101 40 1 4.0879 3.2242 4.4587 41 1 4.7776 4.2312 5.7543 42 1 6.2751 6.7904 4.0126 43 1 6.0787 5.5667 5.3080 44 1 6.2904 8.5638 5.5238 45 1 6.7699 7.3121 6.7017 46 1 7.3120 10.3064 7.6440 47 1 3.6999 5.9710 6.7727 48 1 2.7435 7.3503 6.1501 49 1 2.1152 2.8105 4.4065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033689920.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:04 Heat of formation + Delta-G solvation = 31.987334 kcal Electronic energy + Delta-G solvation = -29411.149222 eV Core-core repulsion = 25531.457047 eV Total energy + Delta-G solvation = -3879.692175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.55517 -40.78931 -38.85036 -38.18623 -36.22512 -35.20216 -34.10864 -31.96870 -31.07980 -30.26565 -29.73870 -28.83200 -27.89550 -26.45330 -24.90601 -23.97592 -22.79891 -22.56941 -22.04416 -21.13082 -19.76874 -18.93308 -18.76816 -18.05762 -17.09383 -16.96460 -16.67265 -16.31093 -16.26146 -15.84431 -15.52416 -15.39686 -15.16600 -14.86987 -14.47671 -14.28378 -14.24946 -14.07113 -13.92912 -13.65150 -13.63349 -13.48999 -12.91291 -12.86366 -12.85121 -12.74075 -12.54387 -12.38536 -12.32118 -12.07408 -12.01995 -11.81575 -11.80153 -11.67525 -11.50947 -10.95307 -10.73998 -10.51372 -9.63073 -9.25222 -8.90848 -8.65310 -7.84232 -5.23432 0.02604 0.59350 1.06487 1.46181 1.48487 1.57630 1.87468 2.08060 2.29788 2.51323 2.91095 3.32661 3.62417 3.67572 3.72159 3.80305 3.92953 3.99291 4.04825 4.13246 4.20156 4.28937 4.33941 4.42817 4.50485 4.55783 4.57306 4.63780 4.64490 4.67639 4.75398 4.82126 4.85567 4.91332 5.01814 5.05828 5.12169 5.16521 5.18452 5.40599 5.41466 5.51582 5.54992 5.58540 5.60740 5.64976 5.71881 5.74272 6.13536 6.18801 6.48714 6.57209 7.07514 7.24241 7.74167 8.38549 9.24426 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.029581 B = 0.002172 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.320126 B =12890.434601 C =13323.475595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.083 4.083 4 C -0.109 4.109 5 C -0.134 4.134 6 C -0.109 4.109 7 C -0.090 4.090 8 C -0.265 4.265 9 C 0.583 3.417 10 O -0.598 6.598 11 N -0.595 5.595 12 C 0.061 3.939 13 C 0.140 3.860 14 H 0.072 0.928 15 C -0.133 4.133 16 C 0.185 3.815 17 N -0.624 5.624 18 C -0.243 4.243 19 H 0.084 0.916 20 C -0.068 4.068 21 N -0.951 5.951 22 Si 0.982 3.018 23 H -0.289 1.289 24 H -0.265 1.265 25 H -0.292 1.292 26 C 0.134 3.866 27 C 0.140 3.860 28 N -0.558 5.558 29 H 0.439 0.561 30 C 0.084 3.916 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.154 0.846 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.021 0.979 45 H 0.009 0.991 46 H 0.247 0.753 47 H 0.051 0.949 48 H 0.033 0.967 49 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.843 -28.077 -13.533 33.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.085 4.085 4 C -0.127 4.127 5 C -0.152 4.152 6 C -0.128 4.128 7 C -0.094 4.094 8 C -0.276 4.276 9 C 0.375 3.625 10 O -0.480 6.480 11 N -0.325 5.325 12 C -0.080 4.080 13 C 0.035 3.965 14 H 0.091 0.909 15 C -0.172 4.172 16 C 0.059 3.941 17 N -0.351 5.351 18 C -0.371 4.371 19 H 0.102 0.898 20 C -0.261 4.261 21 N -0.600 5.600 22 Si 0.810 3.190 23 H -0.216 1.216 24 H -0.189 1.189 25 H -0.219 1.219 26 C 0.008 3.992 27 C 0.006 3.994 28 N -0.161 5.161 29 H 0.280 0.720 30 C -0.021 4.021 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.171 0.829 37 H 0.157 0.843 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.039 0.961 45 H 0.027 0.973 46 H 0.057 0.943 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -10.913 -27.559 -13.700 32.654 hybrid contribution 0.301 1.467 0.834 1.714 sum -10.612 -26.092 -12.866 30.966 Atomic orbital electron populations 1.21758 0.94324 1.02516 1.01791 1.20535 0.96266 0.90539 1.04266 1.19241 1.02391 0.97469 0.89431 1.21063 0.99323 0.94535 0.97817 1.21168 1.01244 0.95398 0.97424 1.20616 1.00766 0.99431 0.92022 1.19006 1.03729 0.94375 0.92289 1.19795 1.19523 0.94963 0.93290 1.17814 0.76537 0.88195 0.79937 1.90742 1.58284 1.39656 1.59270 1.47627 1.56033 1.09086 1.19804 1.22354 1.03527 0.86420 0.95668 1.21959 0.93824 0.85326 0.95379 0.90950 1.23029 0.95033 1.00151 0.99007 1.20920 0.87501 0.94606 0.91067 1.44673 1.08231 1.41808 1.40383 1.19459 1.00050 1.09592 1.08039 0.89787 1.25726 0.96683 1.01065 1.02590 1.70186 1.08278 1.39714 1.41787 0.85017 0.76799 0.78448 0.78785 1.21647 1.18946 1.21888 1.21919 0.92091 0.93478 0.91691 1.22785 0.94286 0.84673 0.97679 1.41479 1.55776 1.15164 1.03689 0.71976 1.18088 1.04188 0.93791 0.86051 0.93514 0.92919 0.90702 0.89160 0.90272 0.82861 0.84338 0.88345 0.89711 0.88575 0.90383 0.91525 0.89292 0.96117 0.97291 0.94329 0.93129 0.94894 0.76252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 71.98 0.71 -0.39 16 2 C -0.08 -0.62 6.07 29.85 0.18 -0.44 16 3 C -0.08 -1.26 5.15 -19.76 -0.10 -1.36 16 4 C -0.11 -1.74 9.64 22.28 0.21 -1.52 16 5 C -0.13 -2.79 10.03 22.28 0.22 -2.57 16 6 C -0.11 -3.09 10.09 22.41 0.23 -2.86 16 7 C -0.09 -2.42 6.34 -20.08 -0.13 -2.55 16 8 C -0.27 -7.00 5.59 -19.02 -0.11 -7.10 16 9 C 0.58 20.15 7.60 86.51 0.66 20.81 16 10 O -0.60 -26.75 16.48 -4.26 -0.07 -26.82 16 11 N -0.59 -18.31 2.91 -818.82 -2.38 -20.69 16 12 C 0.06 1.19 7.57 127.77 0.97 2.15 16 13 C 0.14 5.50 3.46 46.46 0.16 5.66 16 14 H 0.07 3.37 7.02 -2.39 -0.02 3.35 16 15 C -0.13 -5.23 6.49 31.78 0.21 -5.02 16 16 C 0.18 9.44 5.42 86.73 0.47 9.91 16 17 N -0.62 -33.04 3.39 -691.56 -2.35 -35.38 16 18 C -0.24 -13.88 10.27 84.03 0.86 -13.02 16 19 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 20 C -0.07 -3.93 5.47 84.86 0.46 -3.47 16 21 N -0.95 -58.53 10.39 21.65 0.23 -58.30 16 22 Si 0.98 46.50 29.56 68.60 2.03 48.52 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 C 0.13 5.67 6.79 86.93 0.59 6.26 16 27 C 0.14 2.10 9.55 83.69 0.80 2.90 16 28 N -0.56 -6.64 5.99 -187.09 -1.12 -7.76 16 29 H 0.44 1.67 8.96 -92.71 -0.83 0.84 16 30 C 0.08 1.58 6.94 38.91 0.27 1.85 16 31 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.09 0.51 8.05 -2.39 -0.02 0.49 16 35 H 0.08 0.42 8.12 -2.39 -0.02 0.40 16 36 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.10 3.22 8.06 -2.91 -0.02 3.19 16 39 H 0.08 1.16 7.28 -2.39 -0.02 1.14 16 40 H 0.10 1.38 5.84 -2.39 -0.01 1.37 16 41 H 0.08 1.60 6.37 -2.38 -0.02 1.58 16 42 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.09 2.97 6.48 -2.38 -0.02 2.95 16 44 H 0.02 1.21 6.97 -2.39 -0.02 1.20 16 45 H 0.01 0.49 7.88 -2.39 -0.02 0.47 16 46 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 47 H 0.05 1.88 6.95 -2.39 -0.02 1.86 16 48 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.22 1.54 5.99 -2.91 -0.02 1.52 16 Total: -1.00 -83.62 389.34 3.15 -80.48 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.14 Total: 10.71 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 6.67 Total: 9.25 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -5.62 Total: -122.14 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.07 Total: -26.82 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -83.62 3.15 -80.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033689920.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.464 kcal (2) G-P(sol) polarization free energy of solvation -83.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds