Wall clock time and date at job start Wed Apr 1 2020 00:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39914 * 125.99625 * 2 1 4 4 C 1.38326 * 107.12339 * 180.02562 * 3 2 1 5 5 C 1.41353 * 131.73059 * 179.97438 * 4 3 2 6 6 C 1.35517 * 119.54901 * 180.02562 * 5 4 3 7 7 C 1.46462 * 118.96296 * 0.02562 * 6 5 4 8 8 C 1.47489 * 120.19929 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99914 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00044 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99797 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.47276 * 325.00066 * 11 10 8 13 13 C 1.53002 * 109.46958 * 84.99979 * 11 10 8 14 14 C 1.52997 * 109.46978 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47164 * 299.99874 * 14 13 11 16 16 H 1.08998 * 109.46505 * 299.99708 * 15 14 13 17 17 N 1.46500 * 109.47249 * 180.02562 * 15 14 13 18 18 C 1.36932 * 120.00140 * 84.99833 * 17 15 14 19 19 H 1.08004 * 120.00449 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99922 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47151 * 59.99952 * 22 20 18 24 24 H 1.48499 * 109.47049 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47098 * 299.99805 * 22 20 18 26 26 C 1.52997 * 109.47127 * 59.99836 * 15 14 13 27 27 C 1.52996 * 109.46998 * 204.99519 * 11 10 8 28 28 C 1.36304 * 119.59745 * 0.25665 * 7 6 5 29 29 N 1.36528 * 120.65341 * 359.48425 * 28 7 6 30 30 C 1.35267 * 125.99950 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47570 * 89.97460 * 1 2 3 32 32 H 1.09004 * 109.47568 * 209.97248 * 1 2 3 33 33 H 1.09004 * 109.47490 * 329.97731 * 1 2 3 34 34 H 1.07997 * 126.44138 * 0.04308 * 3 2 1 35 35 H 1.07997 * 120.22752 * 0.02882 * 5 4 3 36 36 H 1.08001 * 120.51989 * 180.02562 * 6 5 4 37 37 H 0.97001 * 120.00457 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.47097 * 299.99818 * 13 11 10 39 39 H 1.09001 * 109.47142 * 59.99782 * 13 11 10 40 40 H 1.09001 * 109.47375 * 59.99908 * 14 13 11 41 41 H 1.09000 * 109.47140 * 179.97438 * 14 13 11 42 42 H 0.97005 * 119.99374 * 264.99912 * 17 15 14 43 43 H 0.96998 * 120.00493 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47153 * 180.02562 * 26 15 14 45 45 H 1.09001 * 109.46832 * 60.00321 * 26 15 14 46 46 H 1.09004 * 109.47368 * 60.00227 * 27 11 10 47 47 H 1.09001 * 109.47372 * 300.00383 * 27 11 10 48 48 H 1.08002 * 119.67305 * 179.72383 * 28 7 6 49 49 H 1.08008 * 125.52818 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1320 0.0000 4 6 3.6382 0.6845 -0.0006 5 6 4.8697 1.3784 -0.0013 6 6 6.0307 0.6793 -0.0023 7 6 5.9772 -0.7843 -0.0032 8 6 7.2240 -1.5723 -0.0049 9 8 7.1754 -2.7872 -0.0051 10 7 8.4172 -0.9456 -0.0051 11 6 9.6557 -1.7283 -0.0062 12 1 9.5134 -2.6343 0.5827 13 6 10.0189 -2.1061 -1.4436 14 6 11.3119 -2.9241 -1.4447 15 6 12.4421 -2.0923 -0.8349 16 1 12.5848 -1.1863 -1.4239 17 7 13.6803 -2.8752 -0.8365 18 6 14.4750 -2.8972 -1.9514 19 1 14.1889 -2.3377 -2.8298 20 6 15.6480 -3.6396 -1.9530 21 7 15.9965 -4.3218 -0.8829 22 14 16.7318 -3.6702 -3.4742 23 1 17.1802 -2.2902 -3.7905 24 1 17.9164 -4.5291 -3.2207 25 1 15.9609 -4.2151 -4.6204 26 6 12.0789 -1.7143 0.6024 27 6 10.7855 -0.8959 0.6033 28 6 4.7683 -1.4138 -0.0083 29 7 3.6084 -0.6936 -0.0020 30 6 2.3021 -1.0943 -0.0005 31 1 -0.3634 0.0005 -1.0277 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3634 0.8898 0.5142 34 1 2.0034 2.1616 0.0007 35 1 4.8854 2.4582 -0.0010 36 1 6.9805 1.1934 -0.0025 37 1 8.4561 0.0237 -0.0045 38 1 9.2139 -2.6991 -1.8779 39 1 10.1611 -1.2000 -2.0326 40 1 11.1691 -3.8302 -0.8559 41 1 11.5704 -3.1937 -2.4687 42 1 13.9371 -3.3781 -0.0477 43 1 16.8163 -4.8403 -0.8838 44 1 12.8838 -1.1214 1.0367 45 1 11.9361 -2.6204 1.1913 46 1 10.5268 -0.6267 1.6274 47 1 10.9278 0.0102 0.0143 48 1 4.7274 -2.4931 -0.0135 49 1 1.9598 -2.1188 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034661060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:39 Heat of formation + Delta-G solvation = 32.804153 kcal Electronic energy + Delta-G solvation = -28318.600925 eV Core-core repulsion = 24438.944170 eV Total energy + Delta-G solvation = -3879.656755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.51079 -40.14400 -38.11365 -36.59618 -34.97231 -33.71624 -33.00850 -31.85739 -30.61372 -30.41392 -28.44417 -27.87061 -26.93932 -24.05866 -23.29022 -22.87145 -22.33478 -21.46904 -20.69417 -20.14083 -19.41607 -18.21582 -17.37313 -16.93741 -16.65394 -16.10246 -15.88172 -15.31759 -14.95694 -14.84661 -14.75476 -14.28798 -13.93852 -13.75693 -13.58162 -13.52877 -13.47432 -13.31575 -13.02703 -12.58074 -12.53164 -12.09208 -12.00548 -11.85310 -11.81480 -11.45206 -11.33558 -11.05731 -10.80777 -10.78824 -10.75040 -10.68799 -10.23145 -10.14314 -10.08483 -9.77448 -9.58776 -9.06852 -8.84462 -8.71099 -7.78183 -6.93318 -5.74509 -3.03015 0.34453 0.76685 2.20370 2.30727 2.69664 3.07054 3.33114 3.44926 3.49445 3.50354 4.07923 4.26274 4.39197 4.49899 4.56643 4.60500 4.79698 4.87068 4.91386 5.02435 5.12791 5.25964 5.28132 5.30181 5.36942 5.51056 5.52721 5.57952 5.59841 5.66208 5.67143 5.71558 5.82201 5.86198 5.86879 6.01661 6.04357 6.22477 6.23251 6.28958 6.46495 6.48227 6.54772 6.55667 6.63293 6.72311 6.86410 6.98985 7.15344 7.34680 7.71358 8.02995 8.44309 9.55202 10.13869 10.48393 11.48158 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.034065 B = 0.001695 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.762282 B =16511.926606 C =16647.593323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.115 4.115 3 C -0.198 4.198 4 C 0.045 3.955 5 C -0.089 4.089 6 C -0.105 4.105 7 C -0.170 4.170 8 C 0.570 3.430 9 O -0.538 6.538 10 N -0.715 5.715 11 C 0.145 3.855 12 H 0.090 0.910 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.177 3.823 16 H 0.046 0.954 17 N -0.725 5.725 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.120 4.120 27 C -0.119 4.119 28 C 0.132 3.868 29 N -0.355 5.355 30 C -0.049 4.049 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.398 0.602 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.175 0.825 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.621 13.292 4.414 32.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C -0.222 4.222 4 C -0.059 4.059 5 C -0.108 4.108 6 C -0.125 4.125 7 C -0.176 4.176 8 C 0.357 3.643 9 O -0.417 6.417 10 N -0.365 5.365 11 C 0.042 3.958 12 H 0.108 0.892 13 C -0.163 4.163 14 C -0.173 4.173 15 C 0.067 3.933 16 H 0.064 0.936 17 N -0.365 5.365 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.159 4.159 27 C -0.158 4.158 28 C 0.009 3.991 29 N -0.020 5.020 30 C -0.175 4.175 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.233 0.767 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.192 0.808 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -29.388 12.222 4.263 32.113 hybrid contribution 0.794 0.169 -0.666 1.050 sum -28.594 12.392 3.597 31.371 Atomic orbital electron populations 1.20227 0.89294 1.02535 1.02088 1.19520 0.95958 0.92101 1.04353 1.21019 0.89539 0.98902 1.12712 1.18952 0.95663 0.81840 1.09477 1.20487 0.89179 1.00279 1.00815 1.21974 0.98762 0.91380 1.00380 1.20294 0.92742 0.93903 1.10650 1.17646 0.83077 0.87051 0.76544 1.90823 1.87297 1.13338 1.50224 1.46009 1.05596 1.10369 1.74573 1.21173 0.81704 0.95020 0.97895 0.89232 1.21904 0.98760 1.00451 0.95194 1.22230 0.93772 0.99043 1.02271 1.20240 0.86651 0.93618 0.92792 0.93600 1.42415 1.21220 1.56877 1.16025 1.19200 1.00900 1.24059 0.92796 0.91286 1.24731 0.98544 1.00236 0.97455 1.69646 1.25451 1.35154 1.27934 0.86291 0.80137 0.77301 0.82595 1.21322 1.21719 1.21325 1.21761 0.95369 0.99695 0.99088 1.21767 0.94772 0.98826 1.00399 1.21742 0.83141 0.98331 0.95863 1.41444 1.05420 1.07080 1.48028 1.21762 0.79657 1.00165 1.15965 0.91407 0.91721 0.91456 0.83613 0.83554 0.84346 0.76722 0.92340 0.92249 0.92466 0.91768 0.78305 0.93507 0.91301 0.91921 0.91806 0.91506 0.80780 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.36 36.00 0.37 -0.06 16 2 C -0.12 -0.92 6.10 -105.05 -0.64 -1.56 16 3 C -0.20 -1.67 10.91 -38.92 -0.42 -2.10 16 4 C 0.04 0.42 6.71 -83.94 -0.56 -0.14 16 5 C -0.09 -0.68 10.09 -39.37 -0.40 -1.07 16 6 C -0.10 -0.81 9.73 -37.24 -0.36 -1.17 16 7 C -0.17 -1.72 5.98 -103.51 -0.62 -2.34 16 8 C 0.57 7.00 7.73 -12.49 -0.10 6.90 16 9 O -0.54 -8.57 15.95 5.28 0.08 -8.48 16 10 N -0.72 -7.58 5.04 -54.86 -0.28 -7.85 16 11 C 0.15 1.87 2.45 -67.93 -0.17 1.71 16 12 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 13 C -0.12 -1.81 5.49 -26.73 -0.15 -1.96 16 14 C -0.13 -2.38 5.50 -26.73 -0.15 -2.53 16 15 C 0.18 3.41 2.77 -67.93 -0.19 3.22 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.73 -18.02 5.12 -53.42 -0.27 -18.29 16 18 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 22 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C -0.12 -1.88 5.39 -26.71 -0.14 -2.03 16 27 C -0.12 -1.42 5.39 -26.71 -0.14 -1.56 16 28 C 0.13 1.32 10.45 -16.16 -0.17 1.15 16 29 N -0.36 -3.45 2.93 -60.50 -0.18 -3.63 16 30 C -0.05 -0.41 11.49 -16.47 -0.19 -0.60 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.14 0.70 6.58 -52.49 -0.35 0.36 16 37 H 0.40 3.02 6.70 -40.82 -0.27 2.75 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.18 1.61 7.56 -52.49 -0.40 1.21 16 49 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 399.13 15.07 6.01 6.01 Total: -1.00 -33.59 399.13 -10.81 -44.40 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -7.61 Total: 9.33 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -4.27 Total: -11.38 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.00 Total: -57.30 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.59 -10.81 -44.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034661060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.208 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds