Wall clock time and date at job start Wed Apr 1 2020 00:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39914 * 125.99625 * 2 1 4 4 C 1.38326 * 107.12339 * 180.02562 * 3 2 1 5 5 C 1.41353 * 131.73059 * 179.97438 * 4 3 2 6 6 C 1.35517 * 119.54901 * 180.02562 * 5 4 3 7 7 C 1.46462 * 118.96296 * 0.02562 * 6 5 4 8 8 C 1.47489 * 120.19929 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99914 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00044 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99797 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.47276 * 325.00066 * 11 10 8 13 13 C 1.53002 * 109.46958 * 84.99979 * 11 10 8 14 14 C 1.52997 * 109.46978 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47164 * 299.99874 * 14 13 11 16 16 H 1.08998 * 109.46505 * 299.99708 * 15 14 13 17 17 N 1.46500 * 109.47249 * 180.02562 * 15 14 13 18 18 C 1.36932 * 120.00140 * 84.99833 * 17 15 14 19 19 H 1.08004 * 120.00449 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99922 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47151 * 59.99952 * 22 20 18 24 24 H 1.48499 * 109.47049 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47098 * 299.99805 * 22 20 18 26 26 C 1.52997 * 109.47127 * 59.99836 * 15 14 13 27 27 C 1.52996 * 109.46998 * 204.99519 * 11 10 8 28 28 C 1.36304 * 119.59745 * 0.25665 * 7 6 5 29 29 N 1.36528 * 120.65341 * 359.48425 * 28 7 6 30 30 C 1.35267 * 125.99950 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47570 * 89.97460 * 1 2 3 32 32 H 1.09004 * 109.47568 * 209.97248 * 1 2 3 33 33 H 1.09004 * 109.47490 * 329.97731 * 1 2 3 34 34 H 1.07997 * 126.44138 * 0.04308 * 3 2 1 35 35 H 1.07997 * 120.22752 * 0.02882 * 5 4 3 36 36 H 1.08001 * 120.51989 * 180.02562 * 6 5 4 37 37 H 0.97001 * 120.00457 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.47097 * 299.99818 * 13 11 10 39 39 H 1.09001 * 109.47142 * 59.99782 * 13 11 10 40 40 H 1.09001 * 109.47375 * 59.99908 * 14 13 11 41 41 H 1.09000 * 109.47140 * 179.97438 * 14 13 11 42 42 H 0.97005 * 119.99374 * 264.99912 * 17 15 14 43 43 H 0.96998 * 120.00493 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47153 * 180.02562 * 26 15 14 45 45 H 1.09001 * 109.46832 * 60.00321 * 26 15 14 46 46 H 1.09004 * 109.47368 * 60.00227 * 27 11 10 47 47 H 1.09001 * 109.47372 * 300.00383 * 27 11 10 48 48 H 1.08002 * 119.67305 * 179.72383 * 28 7 6 49 49 H 1.08008 * 125.52818 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1320 0.0000 4 6 3.6382 0.6845 -0.0006 5 6 4.8697 1.3784 -0.0013 6 6 6.0307 0.6793 -0.0023 7 6 5.9772 -0.7843 -0.0032 8 6 7.2240 -1.5723 -0.0049 9 8 7.1754 -2.7872 -0.0051 10 7 8.4172 -0.9456 -0.0051 11 6 9.6557 -1.7283 -0.0062 12 1 9.5134 -2.6343 0.5827 13 6 10.0189 -2.1061 -1.4436 14 6 11.3119 -2.9241 -1.4447 15 6 12.4421 -2.0923 -0.8349 16 1 12.5848 -1.1863 -1.4239 17 7 13.6803 -2.8752 -0.8365 18 6 14.4750 -2.8972 -1.9514 19 1 14.1889 -2.3377 -2.8298 20 6 15.6480 -3.6396 -1.9530 21 7 15.9965 -4.3218 -0.8829 22 14 16.7318 -3.6702 -3.4742 23 1 17.1802 -2.2902 -3.7905 24 1 17.9164 -4.5291 -3.2207 25 1 15.9609 -4.2151 -4.6204 26 6 12.0789 -1.7143 0.6024 27 6 10.7855 -0.8959 0.6033 28 6 4.7683 -1.4138 -0.0083 29 7 3.6084 -0.6936 -0.0020 30 6 2.3021 -1.0943 -0.0005 31 1 -0.3634 0.0005 -1.0277 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3634 0.8898 0.5142 34 1 2.0034 2.1616 0.0007 35 1 4.8854 2.4582 -0.0010 36 1 6.9805 1.1934 -0.0025 37 1 8.4561 0.0237 -0.0045 38 1 9.2139 -2.6991 -1.8779 39 1 10.1611 -1.2000 -2.0326 40 1 11.1691 -3.8302 -0.8559 41 1 11.5704 -3.1937 -2.4687 42 1 13.9371 -3.3781 -0.0477 43 1 16.8163 -4.8403 -0.8838 44 1 12.8838 -1.1214 1.0367 45 1 11.9361 -2.6204 1.1913 46 1 10.5268 -0.6267 1.6274 47 1 10.9278 0.0102 0.0143 48 1 4.7274 -2.4931 -0.0135 49 1 1.9598 -2.1188 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034661060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:38 Heat of formation + Delta-G solvation = 13.660671 kcal Electronic energy + Delta-G solvation = -28319.431049 eV Core-core repulsion = 24438.944170 eV Total energy + Delta-G solvation = -3880.486879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.13602 -41.15437 -39.36955 -37.29593 -36.42022 -34.79899 -34.14209 -32.74650 -32.11879 -31.68529 -29.37421 -28.77756 -27.86708 -25.65564 -24.35448 -23.69984 -23.42969 -22.55524 -21.69538 -21.14747 -20.53734 -19.18049 -18.83702 -18.06925 -17.35700 -17.02538 -16.88258 -16.58971 -16.09161 -15.86819 -15.54254 -15.37885 -15.32423 -15.08207 -14.92233 -14.63118 -14.12160 -13.97782 -13.90447 -13.81428 -13.46042 -13.17680 -13.08476 -13.05180 -12.80018 -12.62432 -12.44023 -12.35750 -12.30559 -12.18015 -12.03338 -11.93401 -11.66365 -11.46745 -11.40578 -11.21864 -11.12120 -10.82373 -10.11458 -9.34570 -8.98347 -8.40314 -7.92496 -5.20484 -0.37653 0.16828 1.47068 1.49928 1.51584 1.55892 1.59663 1.99084 2.19648 2.57444 2.60115 3.40235 3.45225 3.54368 3.76088 3.79081 3.85540 3.86949 3.91481 3.98877 4.28927 4.30617 4.36927 4.38754 4.40722 4.52614 4.55465 4.60147 4.65538 4.75122 4.81263 4.86383 4.94100 5.00194 5.01684 5.03725 5.11868 5.13942 5.24367 5.25981 5.26633 5.28502 5.44152 5.50105 5.52684 5.56020 5.64809 5.91086 5.95204 6.22904 6.30071 6.48849 7.14235 7.35642 8.13809 8.35913 9.30932 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.034065 B = 0.001695 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.762282 B =16511.926606 C =16647.593323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.122 4.122 3 C -0.205 4.205 4 C 0.020 3.980 5 C -0.087 4.087 6 C -0.108 4.108 7 C -0.177 4.177 8 C 0.570 3.430 9 O -0.583 6.583 10 N -0.699 5.699 11 C 0.153 3.847 12 H 0.067 0.933 13 C -0.112 4.112 14 C -0.123 4.123 15 C 0.172 3.828 16 H 0.049 0.951 17 N -0.739 5.739 18 C -0.238 4.238 19 H 0.075 0.925 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.970 3.030 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.281 1.281 26 C -0.113 4.113 27 C -0.105 4.105 28 C 0.122 3.878 29 N -0.364 5.364 30 C -0.067 4.067 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.169 0.831 37 H 0.417 0.583 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.171 0.829 49 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.181 16.323 4.159 35.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C -0.229 4.229 4 C -0.083 4.083 5 C -0.105 4.105 6 C -0.128 4.128 7 C -0.183 4.183 8 C 0.358 3.642 9 O -0.464 6.464 10 N -0.350 5.350 11 C 0.049 3.951 12 H 0.085 0.915 13 C -0.152 4.152 14 C -0.164 4.164 15 C 0.064 3.936 16 H 0.067 0.933 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.093 0.907 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.799 3.201 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.208 1.208 26 C -0.152 4.152 27 C -0.144 4.144 28 C -0.001 4.001 29 N -0.029 5.029 30 C -0.193 4.193 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.182 0.818 35 H 0.194 0.806 36 H 0.186 0.814 37 H 0.255 0.745 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.188 0.812 49 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -31.000 15.333 3.994 34.814 hybrid contribution 1.129 -0.765 -0.587 1.485 sum -29.870 14.568 3.407 33.408 Atomic orbital electron populations 1.20289 0.87462 1.03434 1.02775 1.19940 0.97331 0.91841 1.03509 1.21394 0.89410 0.99958 1.12160 1.19469 0.96879 0.81889 1.10103 1.20874 0.88328 1.01720 0.99592 1.22223 1.00269 0.89931 1.00341 1.20206 0.91493 0.95122 1.11489 1.17974 0.84016 0.86616 0.75574 1.90805 1.87922 1.15406 1.52289 1.45740 1.04280 1.11167 1.73772 1.20899 0.83076 0.94973 0.96188 0.91513 1.21769 0.96186 1.00314 0.96901 1.22032 0.95347 0.98802 1.00209 1.20503 0.84763 0.92874 0.95494 0.93307 1.42661 1.22848 1.57455 1.14851 1.19602 1.00915 1.22904 0.93597 0.90693 1.25533 1.00320 1.00762 1.00333 1.69808 1.25818 1.36556 1.29980 0.85257 0.78044 0.77490 0.79261 1.20168 1.22314 1.20769 1.21648 0.97501 0.99984 0.96086 1.21671 0.91824 0.98454 1.02429 1.21779 0.83701 0.98444 0.96224 1.41581 1.05527 1.07444 1.48379 1.22236 0.79516 1.01374 1.16181 0.90729 0.90867 0.90554 0.81796 0.80578 0.81367 0.74456 0.93442 0.90386 0.94300 0.94147 0.79744 0.94168 0.91326 0.92906 0.89174 0.89098 0.81195 0.79704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.36 71.24 0.74 0.03 16 2 C -0.12 -1.79 6.10 -20.14 -0.12 -1.92 16 3 C -0.21 -3.11 10.91 22.70 0.25 -2.86 16 4 C 0.02 0.35 6.71 38.98 0.26 0.61 16 5 C -0.09 -1.09 10.09 22.41 0.23 -0.86 16 6 C -0.11 -1.37 9.73 23.78 0.23 -1.14 16 7 C -0.18 -3.37 5.98 -19.15 -0.11 -3.49 16 8 C 0.57 13.48 7.73 86.68 0.67 14.15 16 9 O -0.58 -18.88 15.95 -4.02 -0.06 -18.94 16 10 N -0.70 -13.12 5.04 -445.75 -2.25 -15.37 16 11 C 0.15 3.69 2.45 44.99 0.11 3.80 16 12 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16 13 C -0.11 -3.18 5.49 30.59 0.17 -3.01 16 14 C -0.12 -4.50 5.50 30.60 0.17 -4.33 16 15 C 0.17 6.56 2.77 44.99 0.12 6.69 16 16 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 17 N -0.74 -37.34 5.12 -322.94 -1.65 -39.00 16 18 C -0.24 -13.28 9.93 84.03 0.83 -12.45 16 19 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 21 N -0.97 -60.09 13.06 21.65 0.28 -59.80 16 22 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 26 C -0.11 -3.41 5.39 30.61 0.17 -3.25 16 27 C -0.11 -2.19 5.39 30.61 0.17 -2.02 16 28 C 0.12 2.43 10.45 83.51 0.87 3.31 16 29 N -0.36 -6.87 2.93 -345.32 -1.01 -7.88 16 30 C -0.07 -1.10 11.49 83.26 0.96 -0.14 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 36 H 0.17 0.97 6.58 -2.91 -0.02 0.95 16 37 H 0.42 4.68 6.70 -92.71 -0.62 4.06 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.37 20.27 7.80 -92.70 -0.72 19.55 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.17 3.34 7.56 -2.91 -0.02 3.32 16 49 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -74.97 399.13 3.13 -71.84 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.38 Total: 31.49 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 6.17 Total: -10.91 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -4.63 Total: -122.05 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.06 Total: -18.94 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -74.97 3.13 -71.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034661060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.503 kcal (2) G-P(sol) polarization free energy of solvation -74.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds