Wall clock time and date at job start Wed Apr 1 2020 00:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35742 * 120.33845 * 2 1 4 4 C 1.40821 * 119.72421 * 180.02562 * 3 2 1 5 5 C 1.34544 * 120.58416 * 359.97438 * 4 3 2 6 6 N 1.37439 * 120.74042 * 0.04474 * 5 4 3 7 7 C 1.35127 * 131.28370 * 179.97438 * 6 5 4 8 8 C 1.38060 * 108.76953 * 180.02562 * 7 6 5 9 9 C 1.47494 * 126.37183 * 179.97438 * 8 7 6 10 10 O 1.21605 * 120.00252 * 331.91687 * 9 8 7 11 11 N 1.34772 * 120.00194 * 151.91425 * 9 8 7 12 12 C 1.46928 * 120.63131 * 353.82460 * 11 9 8 13 13 C 1.53193 * 108.77699 * 233.58385 * 12 11 9 14 14 C 1.53038 * 109.33803 * 305.34823 * 13 12 11 15 15 H 1.09000 * 109.45734 * 301.35773 * 14 13 12 16 16 N 1.46494 * 109.45851 * 181.39916 * 14 13 12 17 17 C 1.36944 * 120.00148 * 84.99890 * 16 14 13 18 18 H 1.07998 * 119.99350 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00322 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00157 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00129 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47343 * 89.99186 * 21 19 17 23 23 H 1.48491 * 109.47285 * 209.99526 * 21 19 17 24 24 H 1.48505 * 109.46904 * 329.99630 * 21 19 17 25 25 C 1.53109 * 109.50498 * 61.34580 * 14 13 12 26 26 H 1.09000 * 109.51299 * 58.63065 * 25 14 13 27 27 C 1.53000 * 109.48710 * 178.69777 * 25 14 13 28 28 C 1.46925 * 120.63273 * 173.79818 * 11 9 8 29 29 C 1.41193 * 107.25504 * 0.22429 * 8 7 6 30 30 C 1.37947 * 119.80985 * 359.97438 * 6 5 4 31 31 H 1.09003 * 109.47093 * 90.00601 * 1 2 3 32 32 H 1.09005 * 109.47243 * 210.00570 * 1 2 3 33 33 H 1.08999 * 109.47055 * 330.00240 * 1 2 3 34 34 H 1.08003 * 120.13186 * 0.03748 * 3 2 1 35 35 H 1.07997 * 119.71045 * 179.97438 * 4 3 2 36 36 H 1.07997 * 119.62699 * 180.02562 * 5 4 3 37 37 H 1.08004 * 125.61187 * 359.96272 * 7 6 5 38 38 H 1.09003 * 109.58859 * 113.79644 * 12 11 9 39 39 H 1.09002 * 109.58539 * 353.37293 * 12 11 9 40 40 H 1.09004 * 109.49390 * 65.31181 * 13 12 11 41 41 H 1.08998 * 109.49679 * 185.37886 * 13 12 11 42 42 H 0.96997 * 120.00384 * 264.99895 * 16 14 13 43 43 H 0.97001 * 120.00252 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46736 * 179.85400 * 27 25 14 45 45 H 1.08996 * 109.47194 * 299.85698 * 27 25 14 46 46 H 1.09004 * 109.46778 * 59.85755 * 27 25 14 47 47 H 1.09002 * 109.58968 * 246.20277 * 28 11 9 48 48 H 1.08996 * 109.58978 * 6.48527 * 28 11 9 49 49 H 1.08002 * 126.56756 * 179.76418 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6007 1.1564 -0.0005 5 6 4.2728 -0.0091 -0.0006 6 7 3.6004 -1.2078 -0.0009 7 6 4.0499 -2.4821 -0.0015 8 6 2.9649 -3.3358 -0.0023 9 6 3.0118 -4.8100 -0.0036 10 8 3.9598 -5.3878 -0.4998 11 7 2.0041 -5.5169 0.5452 12 6 0.9194 -4.8375 1.2669 13 6 0.7884 -5.4604 2.6603 14 6 0.6004 -6.9731 2.5235 15 1 -0.2887 -7.1760 1.9265 16 7 0.4414 -7.5673 3.8531 17 6 -0.7929 -7.5997 4.4454 18 1 -1.6489 -7.1867 3.9325 19 6 -0.9437 -8.1631 5.7050 20 7 -2.1299 -8.1938 6.2744 21 14 0.5371 -8.8767 6.5924 22 1 1.1782 -7.8193 7.4148 23 1 0.0981 -9.9898 7.4718 24 1 1.5122 -9.3881 5.5960 25 6 1.8260 -7.5803 1.8355 26 1 2.7192 -7.3570 2.4191 27 6 1.6521 -9.0966 1.7281 28 6 1.9688 -6.9814 0.4328 29 6 1.8019 -2.5351 -0.0075 30 6 2.2210 -1.2203 -0.0008 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6603 2.1113 0.0006 35 1 4.1460 2.0886 -0.0010 36 1 5.3528 -0.0026 -0.0006 37 1 5.0871 -2.7832 -0.0023 38 1 -0.0162 -4.9617 0.7216 39 1 1.1516 -3.7767 1.3612 40 1 1.6911 -5.2566 3.2362 41 1 -0.0737 -5.0314 3.1709 42 1 1.2103 -7.9378 4.3139 43 1 -2.2354 -8.5879 7.1545 44 1 2.5236 -9.5283 1.2360 45 1 1.5506 -9.5223 2.7264 46 1 0.7582 -9.3194 1.1454 47 1 1.1188 -7.2805 -0.1805 48 1 2.8924 -7.3350 -0.0255 49 1 0.7801 -2.8847 -0.0130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036255894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:44 Heat of formation + Delta-G solvation = 57.901027 kcal Electronic energy + Delta-G solvation = -29795.242804 eV Core-core repulsion = 25916.674331 eV Total energy + Delta-G solvation = -3878.568473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.51853 -39.93706 -37.72078 -36.81360 -34.83477 -34.32404 -32.86373 -31.52950 -30.67231 -29.77861 -28.73206 -27.40295 -26.44049 -25.31782 -23.44112 -22.58109 -22.22756 -21.49954 -21.28793 -19.89967 -19.03357 -17.75568 -17.44425 -16.79450 -16.55985 -15.93175 -15.63141 -15.18690 -14.96320 -14.77364 -14.47793 -14.29150 -13.99189 -13.73331 -13.57397 -13.35928 -13.24335 -13.12492 -12.89558 -12.49395 -12.39870 -12.27273 -11.99419 -11.88543 -11.72961 -11.65772 -11.42159 -11.28946 -11.01763 -10.82152 -10.65162 -10.48753 -10.29624 -10.20715 -9.79567 -9.72409 -9.56692 -8.90954 -8.77433 -8.39351 -7.58471 -7.24709 -5.76929 -3.11736 0.47499 1.10502 2.01813 2.37585 3.13892 3.16875 3.37735 3.41433 3.44635 3.46326 4.18814 4.35407 4.50248 4.58172 4.59538 4.66923 4.92733 5.01244 5.10856 5.12935 5.19415 5.25622 5.29278 5.31419 5.34705 5.48083 5.52137 5.61462 5.64718 5.65683 5.67475 5.76107 5.81475 5.93094 6.02917 6.05791 6.07814 6.11257 6.18869 6.33024 6.36527 6.42399 6.51061 6.58518 6.64072 6.73345 6.85900 6.99174 7.00342 7.57743 7.99377 8.31335 8.42457 9.21098 9.94104 10.14438 11.41494 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.002823 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.484816 B = 9916.400200 C =10958.087221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.038 4.038 3 C -0.144 4.144 4 C -0.130 4.130 5 C 0.034 3.966 6 N -0.340 5.340 7 C 0.014 3.986 8 C -0.162 4.162 9 C 0.588 3.412 10 O -0.552 6.552 11 N -0.598 5.598 12 C 0.091 3.909 13 C -0.151 4.151 14 C 0.189 3.811 15 H 0.056 0.944 16 N -0.746 5.746 17 C -0.239 4.239 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.935 5.935 21 Si 0.882 3.118 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.113 4.113 26 H 0.068 0.932 27 C -0.137 4.137 28 C 0.122 3.878 29 C -0.164 4.164 30 C 0.031 3.969 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.145 0.855 36 H 0.161 0.839 37 H 0.179 0.821 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.045 0.955 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.237 18.750 -15.799 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.039 4.039 3 C -0.164 4.164 4 C -0.150 4.150 5 C -0.084 4.084 6 N -0.003 5.003 7 C -0.120 4.120 8 C -0.170 4.170 9 C 0.376 3.624 10 O -0.432 6.432 11 N -0.330 5.330 12 C -0.031 4.031 13 C -0.192 4.192 14 C 0.079 3.921 15 H 0.074 0.926 16 N -0.387 5.387 17 C -0.369 4.369 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.583 5.583 21 Si 0.712 3.288 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.133 4.133 26 H 0.087 0.913 27 C -0.195 4.195 28 C -0.001 4.001 29 C -0.188 4.188 30 C -0.074 4.074 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.196 0.804 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.667 18.595 -15.990 26.744 hybrid contribution 1.068 -0.416 0.956 1.493 sum 11.735 18.179 -15.033 26.347 Atomic orbital electron populations 1.20757 0.89450 1.03745 1.02970 1.19405 0.96570 0.90093 0.97854 1.20816 0.93644 0.97940 1.03975 1.20688 0.94857 0.97002 1.02499 1.21635 0.98385 0.83142 1.05237 1.41274 1.07221 1.05357 1.46451 1.21935 0.99632 0.79866 1.10524 1.19509 0.93267 0.92928 1.11251 1.17431 0.81699 0.85517 0.77708 1.90746 1.33342 1.71538 1.47555 1.47923 1.24049 1.07273 1.53711 1.22381 0.89250 0.98176 0.93332 1.22635 1.02583 0.99407 0.94574 1.20191 0.94864 0.89964 0.87085 0.92559 1.42779 1.07885 1.71516 1.16568 1.19053 0.86121 1.32693 0.99059 0.89207 1.24647 0.96067 1.01101 0.97296 1.69694 1.21180 1.50738 1.16655 0.86590 0.83276 0.79004 0.79883 1.21224 1.21841 1.20281 1.21792 0.99917 0.96097 0.95535 0.91347 1.21673 1.00682 0.94335 1.02825 1.21680 1.02918 0.78305 0.97156 1.21378 0.98667 0.89384 1.09322 1.18656 0.81803 0.95000 1.11891 0.90439 0.90566 0.90785 0.84941 0.83759 0.82213 0.80395 0.91474 0.88386 0.92395 0.90177 0.80666 0.93113 0.93589 0.91455 0.92584 0.91376 0.89260 0.82334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 9.91 36.00 0.36 -0.39 16 2 C -0.04 -0.34 5.91 -104.32 -0.62 -0.96 16 3 C -0.14 -1.06 9.72 -39.50 -0.38 -1.45 16 4 C -0.13 -0.87 9.97 -39.91 -0.40 -1.26 16 5 C 0.03 0.26 10.89 -16.34 -0.18 0.09 16 6 N -0.34 -3.62 2.92 -60.42 -0.18 -3.80 16 7 C 0.01 0.17 11.48 -16.17 -0.19 -0.02 16 8 C -0.16 -2.17 5.57 -105.07 -0.58 -2.75 16 9 C 0.59 9.13 7.63 -12.49 -0.10 9.03 16 10 O -0.55 -10.06 16.43 5.27 0.09 -9.98 16 11 N -0.60 -8.70 2.97 -174.01 -0.52 -9.22 16 12 C 0.09 1.22 5.21 -3.71 -0.02 1.20 16 13 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 14 C 0.19 3.47 2.20 -67.86 -0.15 3.32 16 15 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 16 N -0.75 -17.01 4.22 -53.35 -0.22 -17.24 16 17 C -0.24 -6.52 10.41 -15.06 -0.16 -6.67 16 18 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -28.98 13.97 55.49 0.78 -28.21 16 21 Si 0.88 22.03 27.74 -169.99 -4.71 17.31 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 24 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 25 C -0.11 -1.82 2.46 -90.47 -0.22 -2.04 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 27 C -0.14 -2.14 9.02 37.16 0.34 -1.80 16 28 C 0.12 1.77 5.73 -3.71 -0.02 1.75 16 29 C -0.16 -1.90 8.01 -38.55 -0.31 -2.21 16 30 C 0.03 0.34 6.60 -84.00 -0.55 -0.22 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.52 7.71 -51.93 -0.40 0.12 16 33 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 34 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.18 1.80 8.06 -52.48 -0.42 1.38 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.21 4.11 -51.93 -0.21 0.99 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.36 8.29 5.37 -40.82 -0.22 8.07 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.20 7.37 -51.93 -0.38 0.81 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 49 H 0.16 1.60 6.29 -52.49 -0.33 1.27 16 LS Contribution 388.57 15.07 5.86 5.86 Total: -1.00 -34.11 388.57 -9.76 -43.86 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.41 Total: 8.41 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -3.43 Total: -7.01 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.14 Total: -58.46 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.11 -9.76 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036255894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.765 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds