Wall clock time and date at job start Wed Apr 1 2020 00:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35742 * 120.33845 * 2 1 4 4 C 1.40821 * 119.72421 * 180.02562 * 3 2 1 5 5 C 1.34544 * 120.58416 * 359.97438 * 4 3 2 6 6 N 1.37439 * 120.74042 * 0.04474 * 5 4 3 7 7 C 1.35127 * 131.28370 * 179.97438 * 6 5 4 8 8 C 1.38060 * 108.76953 * 180.02562 * 7 6 5 9 9 C 1.47494 * 126.37183 * 179.97438 * 8 7 6 10 10 O 1.21605 * 120.00252 * 331.91687 * 9 8 7 11 11 N 1.34772 * 120.00194 * 151.91425 * 9 8 7 12 12 C 1.46928 * 120.63131 * 353.82460 * 11 9 8 13 13 C 1.53193 * 108.77699 * 233.58385 * 12 11 9 14 14 C 1.53038 * 109.33803 * 305.34823 * 13 12 11 15 15 H 1.09000 * 109.45734 * 301.35773 * 14 13 12 16 16 N 1.46494 * 109.45851 * 181.39916 * 14 13 12 17 17 C 1.36944 * 120.00148 * 84.99890 * 16 14 13 18 18 H 1.07998 * 119.99350 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00322 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00157 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00129 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47343 * 89.99186 * 21 19 17 23 23 H 1.48491 * 109.47285 * 209.99526 * 21 19 17 24 24 H 1.48505 * 109.46904 * 329.99630 * 21 19 17 25 25 C 1.53109 * 109.50498 * 61.34580 * 14 13 12 26 26 H 1.09000 * 109.51299 * 58.63065 * 25 14 13 27 27 C 1.53000 * 109.48710 * 178.69777 * 25 14 13 28 28 C 1.46925 * 120.63273 * 173.79818 * 11 9 8 29 29 C 1.41193 * 107.25504 * 0.22429 * 8 7 6 30 30 C 1.37947 * 119.80985 * 359.97438 * 6 5 4 31 31 H 1.09003 * 109.47093 * 90.00601 * 1 2 3 32 32 H 1.09005 * 109.47243 * 210.00570 * 1 2 3 33 33 H 1.08999 * 109.47055 * 330.00240 * 1 2 3 34 34 H 1.08003 * 120.13186 * 0.03748 * 3 2 1 35 35 H 1.07997 * 119.71045 * 179.97438 * 4 3 2 36 36 H 1.07997 * 119.62699 * 180.02562 * 5 4 3 37 37 H 1.08004 * 125.61187 * 359.96272 * 7 6 5 38 38 H 1.09003 * 109.58859 * 113.79644 * 12 11 9 39 39 H 1.09002 * 109.58539 * 353.37293 * 12 11 9 40 40 H 1.09004 * 109.49390 * 65.31181 * 13 12 11 41 41 H 1.08998 * 109.49679 * 185.37886 * 13 12 11 42 42 H 0.96997 * 120.00384 * 264.99895 * 16 14 13 43 43 H 0.97001 * 120.00252 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46736 * 179.85400 * 27 25 14 45 45 H 1.08996 * 109.47194 * 299.85698 * 27 25 14 46 46 H 1.09004 * 109.46778 * 59.85755 * 27 25 14 47 47 H 1.09002 * 109.58968 * 246.20277 * 28 11 9 48 48 H 1.08996 * 109.58978 * 6.48527 * 28 11 9 49 49 H 1.08002 * 126.56756 * 179.76418 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6007 1.1564 -0.0005 5 6 4.2728 -0.0091 -0.0006 6 7 3.6004 -1.2078 -0.0009 7 6 4.0499 -2.4821 -0.0015 8 6 2.9649 -3.3358 -0.0023 9 6 3.0118 -4.8100 -0.0036 10 8 3.9598 -5.3878 -0.4998 11 7 2.0041 -5.5169 0.5452 12 6 0.9194 -4.8375 1.2669 13 6 0.7884 -5.4604 2.6603 14 6 0.6004 -6.9731 2.5235 15 1 -0.2887 -7.1760 1.9265 16 7 0.4414 -7.5673 3.8531 17 6 -0.7929 -7.5997 4.4454 18 1 -1.6489 -7.1867 3.9325 19 6 -0.9437 -8.1631 5.7050 20 7 -2.1299 -8.1938 6.2744 21 14 0.5371 -8.8767 6.5924 22 1 1.1782 -7.8193 7.4148 23 1 0.0981 -9.9898 7.4718 24 1 1.5122 -9.3881 5.5960 25 6 1.8260 -7.5803 1.8355 26 1 2.7192 -7.3570 2.4191 27 6 1.6521 -9.0966 1.7281 28 6 1.9688 -6.9814 0.4328 29 6 1.8019 -2.5351 -0.0075 30 6 2.2210 -1.2203 -0.0008 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6603 2.1113 0.0006 35 1 4.1460 2.0886 -0.0010 36 1 5.3528 -0.0026 -0.0006 37 1 5.0871 -2.7832 -0.0023 38 1 -0.0162 -4.9617 0.7216 39 1 1.1516 -3.7767 1.3612 40 1 1.6911 -5.2566 3.2362 41 1 -0.0737 -5.0314 3.1709 42 1 1.2103 -7.9378 4.3139 43 1 -2.2354 -8.5879 7.1545 44 1 2.5236 -9.5283 1.2360 45 1 1.5506 -9.5223 2.7264 46 1 0.7582 -9.3194 1.1454 47 1 1.1188 -7.2805 -0.1805 48 1 2.8924 -7.3350 -0.0255 49 1 0.7801 -2.8847 -0.0130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036255894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:43 Heat of formation + Delta-G solvation = 38.916461 kcal Electronic energy + Delta-G solvation = -29796.066036 eV Core-core repulsion = 25916.674331 eV Total energy + Delta-G solvation = -3879.391706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.28014 -41.13416 -39.04470 -37.55524 -36.30218 -35.17588 -34.36696 -33.22343 -31.60107 -31.31769 -29.47816 -28.18295 -27.42014 -26.85329 -24.76437 -23.70973 -23.15910 -22.81405 -22.18365 -21.30326 -20.18442 -19.41873 -18.47752 -17.76280 -17.41677 -16.87198 -16.72234 -16.49693 -16.05328 -15.99881 -15.87102 -15.25569 -15.19512 -14.90512 -14.73665 -14.57575 -14.27661 -14.15317 -14.07339 -13.75369 -13.58716 -13.38502 -13.13659 -12.95754 -12.92977 -12.76980 -12.56203 -12.41526 -12.31535 -12.13076 -12.02954 -11.94223 -11.86276 -11.74847 -11.18123 -11.10329 -11.04579 -10.79657 -9.76416 -9.48444 -9.24684 -8.28586 -7.99102 -5.30645 -0.17773 0.38307 1.09130 1.38360 1.39450 1.46872 1.62059 2.05718 2.36752 2.49839 2.54409 3.32592 3.47213 3.57066 3.63874 3.78054 3.85005 3.96798 4.03432 4.07035 4.10422 4.18175 4.28542 4.35851 4.37169 4.48822 4.54036 4.65130 4.74423 4.75881 4.81284 4.82863 4.84353 4.85834 4.89564 4.97400 5.02431 5.15722 5.18238 5.25772 5.27684 5.37126 5.38164 5.48186 5.49300 5.60629 5.70956 5.81565 5.91095 6.25230 6.28441 6.41140 7.11016 7.13921 7.88056 8.06681 9.22483 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.002823 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.484816 B = 9916.400200 C =10958.087221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.063 4.063 3 C -0.136 4.136 4 C -0.124 4.124 5 C 0.014 3.986 6 N -0.341 5.341 7 C 0.002 3.998 8 C -0.188 4.188 9 C 0.587 3.413 10 O -0.586 6.586 11 N -0.598 5.598 12 C 0.102 3.898 13 C -0.142 4.142 14 C 0.183 3.817 15 H 0.052 0.948 16 N -0.748 5.748 17 C -0.216 4.216 18 H 0.063 0.937 19 C -0.063 4.063 20 N -0.984 5.984 21 Si 0.945 3.055 22 H -0.284 1.284 23 H -0.298 1.298 24 H -0.254 1.254 25 C -0.103 4.103 26 H 0.059 0.941 27 C -0.134 4.134 28 C 0.126 3.874 29 C -0.178 4.178 30 C 0.023 3.977 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.180 0.820 36 H 0.187 0.813 37 H 0.188 0.812 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.362 0.638 43 H 0.256 0.744 44 H 0.068 0.932 45 H 0.044 0.956 46 H 0.060 0.940 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.797 21.038 -17.052 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.064 4.064 3 C -0.156 4.156 4 C -0.143 4.143 5 C -0.103 4.103 6 N -0.004 5.004 7 C -0.132 4.132 8 C -0.195 4.195 9 C 0.377 3.623 10 O -0.468 6.468 11 N -0.329 5.329 12 C -0.020 4.020 13 C -0.183 4.183 14 C 0.075 3.925 15 H 0.070 0.930 16 N -0.390 5.390 17 C -0.347 4.347 18 H 0.081 0.919 19 C -0.254 4.254 20 N -0.635 5.635 21 Si 0.774 3.226 22 H -0.211 1.211 23 H -0.225 1.225 24 H -0.179 1.179 25 C -0.123 4.123 26 H 0.078 0.922 27 C -0.192 4.192 28 C 0.003 3.997 29 C -0.202 4.202 30 C -0.082 4.082 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.177 0.823 35 H 0.198 0.802 36 H 0.205 0.795 37 H 0.205 0.795 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.194 0.806 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.106 0.894 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 12.255 20.911 -17.288 29.771 hybrid contribution 0.573 -0.908 1.246 1.644 sum 12.828 20.003 -16.043 28.671 Atomic orbital electron populations 1.20793 0.88231 1.04195 1.03562 1.19713 0.97674 0.89820 0.99168 1.21290 0.94307 0.98494 1.01542 1.21209 0.94850 0.97974 1.00298 1.22301 0.99987 0.82468 1.05557 1.41461 1.07358 1.05788 1.45783 1.22053 0.99788 0.80429 1.10905 1.19422 0.94694 0.91840 1.13577 1.17764 0.81066 0.86475 0.76974 1.90713 1.34551 1.72403 1.49151 1.47964 1.24104 1.07300 1.53514 1.22363 0.89800 0.98563 0.91321 1.22454 1.01376 0.97986 0.96481 1.20417 0.95947 0.90999 0.85105 0.93031 1.42799 1.06271 1.71905 1.18014 1.19014 0.86919 1.30243 0.98522 0.91922 1.25363 0.98721 1.02757 0.98543 1.69859 1.23592 1.52941 1.17131 0.85547 0.80305 0.77924 0.78824 1.21078 1.22548 1.17900 1.21666 0.97995 0.96554 0.96089 0.92247 1.21635 1.02064 0.93714 1.01766 1.21641 1.03559 0.78384 0.96068 1.21448 0.98620 0.89691 1.10394 1.19020 0.82334 0.95594 1.11245 0.89742 0.91238 0.89243 0.82283 0.80249 0.79548 0.79536 0.89646 0.86934 0.93409 0.91611 0.80554 0.93553 0.91272 0.93730 0.92106 0.89699 0.89432 0.81489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.91 71.23 0.71 -0.56 16 2 C -0.06 -0.99 5.91 -19.67 -0.12 -1.10 16 3 C -0.14 -1.55 9.72 22.32 0.22 -1.33 16 4 C -0.12 -1.19 9.97 22.06 0.22 -0.97 16 5 C 0.01 0.18 10.89 82.97 0.90 1.08 16 6 N -0.34 -6.81 2.92 -345.05 -1.01 -7.81 16 7 C 0.00 0.05 11.48 84.14 0.97 1.02 16 8 C -0.19 -4.98 5.57 -20.15 -0.11 -5.09 16 9 C 0.59 18.12 7.63 86.68 0.66 18.78 16 10 O -0.59 -21.45 16.43 -4.05 -0.07 -21.52 16 11 N -0.60 -16.95 2.97 -822.70 -2.45 -19.40 16 12 C 0.10 2.64 5.21 86.36 0.45 3.09 16 13 C -0.14 -4.69 5.66 30.67 0.17 -4.52 16 14 C 0.18 6.68 2.20 45.04 0.10 6.78 16 15 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 16 N -0.75 -34.04 4.22 -322.72 -1.36 -35.40 16 17 C -0.22 -11.94 10.41 84.03 0.87 -11.07 16 18 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 19 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 20 N -0.98 -62.68 13.97 21.65 0.30 -62.37 16 21 Si 0.95 45.92 27.74 68.60 1.90 47.83 16 22 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 23 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 24 H -0.25 -11.25 6.52 99.48 0.65 -10.60 16 25 C -0.10 -3.21 2.46 -10.69 -0.03 -3.24 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 C -0.13 -3.99 9.02 71.98 0.65 -3.34 16 28 C 0.13 3.51 5.73 86.36 0.49 4.00 16 29 C -0.18 -4.04 8.01 22.94 0.18 -3.86 16 30 C 0.02 0.49 6.60 38.90 0.26 0.75 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.87 7.71 -2.38 -0.02 0.86 16 33 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 34 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 35 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 36 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.11 2.68 4.11 -2.39 -0.01 2.67 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.36 16.33 5.37 -92.71 -0.50 15.83 16 43 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.04 1.53 7.37 -2.39 -0.02 1.51 16 46 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.09 2.53 7.00 -2.39 -0.02 2.52 16 49 H 0.17 3.25 6.29 -2.91 -0.02 3.23 16 Total: -1.00 -75.63 388.57 4.79 -70.83 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.40 Total: 30.61 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 7.07 Total: -2.77 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -4.51 Total: -124.99 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.07 Total: -21.52 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.83 kcal Total: -75.63 4.79 -70.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036255894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.748 kcal (2) G-P(sol) polarization free energy of solvation -75.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds