Wall clock time and date at job start Wed Apr 1 2020 00:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35739 * 120.33409 * 2 1 4 4 C 1.40825 * 119.71974 * 180.02562 * 3 2 1 5 5 C 1.34542 * 120.58341 * 359.97438 * 4 3 2 6 6 N 1.37432 * 120.74634 * 0.02562 * 5 4 3 7 7 C 1.35124 * 131.29081 * 179.97438 * 6 5 4 8 8 C 1.38057 * 108.77523 * 180.24349 * 7 6 5 9 9 C 1.47499 * 126.37659 * 179.76300 * 8 7 6 10 10 O 1.21595 * 119.99630 * 28.90023 * 9 8 7 11 11 N 1.34769 * 119.99857 * 208.90960 * 9 8 7 12 12 C 1.46928 * 120.63487 * 6.09649 * 11 9 8 13 13 C 1.53624 * 108.54161 * 126.37213 * 12 11 9 14 14 C 1.53042 * 109.24249 * 54.85875 * 13 12 11 15 15 H 1.09004 * 109.45835 * 178.48928 * 14 13 12 16 16 N 1.46500 * 109.44728 * 58.52452 * 14 13 12 17 17 C 1.36933 * 120.00134 * 84.93747 * 16 14 13 18 18 H 1.07998 * 119.99820 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00320 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00229 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99622 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47453 * 89.99724 * 21 19 17 23 23 H 1.48501 * 109.47176 * 209.99164 * 21 19 17 24 24 H 1.48496 * 109.47422 * 329.99471 * 21 19 17 25 25 C 1.53039 * 109.53796 * 298.50957 * 14 13 12 26 26 H 1.09002 * 109.50112 * 301.41505 * 25 14 13 27 27 C 1.52995 * 109.49702 * 181.31609 * 25 14 13 28 28 C 1.46933 * 120.62657 * 186.38102 * 11 9 8 29 29 C 1.41200 * 107.25291 * 359.61065 * 8 7 6 30 30 C 1.37958 * 119.80876 * 359.97438 * 6 5 4 31 31 H 1.09000 * 109.46549 * 269.97411 * 1 2 3 32 32 H 1.08996 * 109.47445 * 29.97296 * 1 2 3 33 33 H 1.09003 * 109.46933 * 149.97904 * 1 2 3 34 34 H 1.07998 * 120.14077 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.70651 * 180.02562 * 4 3 2 36 36 H 1.07999 * 119.62686 * 180.02562 * 5 4 3 37 37 H 1.08003 * 125.61364 * 359.97438 * 7 6 5 38 38 H 1.09003 * 109.58885 * 246.20560 * 12 11 9 39 39 H 1.08999 * 109.57999 * 6.63494 * 12 11 9 40 40 H 1.09002 * 109.63120 * 294.86618 * 13 12 11 41 41 H 1.09003 * 109.45629 * 174.74436 * 13 12 11 42 42 H 0.97000 * 119.99899 * 264.93216 * 16 14 13 43 43 H 0.96993 * 119.99637 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.47649 * 300.16049 * 27 25 14 45 45 H 1.09004 * 109.46962 * 60.16556 * 27 25 14 46 46 H 1.09004 * 109.46960 * 180.16069 * 27 25 14 47 47 H 1.08996 * 109.58975 * 353.36989 * 28 11 9 48 48 H 1.09007 * 109.58354 * 113.65259 * 28 11 9 49 49 H 1.07998 * 126.57035 * 180.14410 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1565 -0.0005 5 6 4.2728 -0.0091 -0.0006 6 7 3.6005 -1.2078 -0.0006 7 6 4.0499 -2.4821 -0.0010 8 6 2.9650 -3.3358 -0.0063 9 6 3.0119 -4.8100 -0.0135 10 8 3.9522 -5.3908 0.4936 11 7 2.0128 -5.5133 -0.5822 12 6 0.9385 -4.8292 -1.3148 13 6 0.8335 -5.4470 -2.7174 14 6 0.6417 -6.9600 -2.5891 15 1 0.5399 -7.3986 -3.5818 16 7 -0.5671 -7.2339 -1.8082 17 6 -1.7892 -7.2621 -2.4253 18 1 -1.8618 -7.0828 -3.4878 19 6 -2.9346 -7.5221 -1.6855 20 7 -4.1093 -7.5487 -2.2786 21 14 -2.8088 -7.8329 0.1522 22 1 -2.9300 -6.5451 0.8815 23 1 -3.9006 -8.7461 0.5757 24 1 -1.4960 -8.4546 0.4604 25 6 1.8541 -7.5715 -1.8834 26 1 2.7572 -7.3467 -2.4509 27 6 1.6764 -9.0879 -1.7848 28 6 1.9738 -6.9782 -0.4761 29 6 1.8020 -2.5351 -0.0001 30 6 2.2210 -1.2204 0.0000 31 1 -0.3632 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6603 2.1113 0.0004 35 1 4.1459 2.0887 -0.0001 36 1 5.3527 -0.0026 -0.0006 37 1 5.0871 -2.7832 -0.0019 38 1 -0.0050 -4.9578 -0.7843 39 1 1.1716 -3.7677 -1.3981 40 1 1.7461 -5.2421 -3.2771 41 1 -0.0193 -5.0153 -3.2414 42 1 -0.5019 -7.3953 -0.8539 43 1 -4.9096 -7.7301 -1.7615 44 1 0.7726 -9.3118 -1.2184 45 1 1.5914 -9.5096 -2.7864 46 1 2.5389 -9.5227 -1.2796 47 1 2.8900 -7.3351 -0.0058 48 1 1.1144 -7.2784 0.1236 49 1 0.7801 -2.8847 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036255895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:49 Heat of formation + Delta-G solvation = 60.211777 kcal Electronic energy + Delta-G solvation = -30366.143607 eV Core-core repulsion = 26487.675336 eV Total energy + Delta-G solvation = -3878.468271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.45150 -39.91956 -37.78450 -36.74981 -34.63034 -34.10516 -32.84974 -31.46584 -30.59452 -29.69580 -28.66613 -27.32460 -26.36901 -25.36124 -23.33421 -22.99115 -22.23570 -21.61242 -21.35534 -19.44577 -18.38965 -17.83163 -17.54357 -16.70355 -16.46764 -15.86544 -15.55687 -15.09428 -14.97545 -14.64567 -14.39735 -14.30812 -13.97559 -13.63313 -13.52792 -13.45923 -13.22218 -13.03719 -12.90982 -12.54719 -12.33147 -12.14644 -11.93405 -11.78788 -11.66026 -11.55025 -11.37304 -11.23783 -10.98283 -10.87646 -10.58096 -10.47428 -10.21214 -10.18307 -9.81800 -9.68200 -9.53321 -8.93103 -8.69920 -8.23180 -7.51597 -7.25777 -5.77699 -3.12437 0.53747 1.16328 2.09730 2.43944 3.22675 3.25943 3.35365 3.38675 3.44828 3.52073 4.24442 4.42457 4.55826 4.57732 4.65349 4.74339 4.98974 5.07434 5.19510 5.22641 5.26819 5.32423 5.34278 5.40741 5.42315 5.55109 5.59075 5.66749 5.69417 5.74214 5.77055 5.83422 5.87812 5.96652 5.99237 6.13589 6.14028 6.16047 6.27882 6.37949 6.42499 6.49516 6.58138 6.63756 6.70084 6.72949 6.80328 6.97004 7.05648 7.70583 7.99390 8.40649 8.41736 9.20250 9.92970 10.13348 11.40827 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.003485 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.423798 B = 8033.158669 C = 9394.913636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.035 4.035 3 C -0.146 4.146 4 C -0.130 4.130 5 C 0.033 3.967 6 N -0.340 5.340 7 C 0.012 3.988 8 C -0.162 4.162 9 C 0.586 3.414 10 O -0.555 6.555 11 N -0.596 5.596 12 C 0.098 3.902 13 C -0.148 4.148 14 C 0.184 3.816 15 H 0.059 0.941 16 N -0.744 5.744 17 C -0.238 4.238 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.934 5.934 21 Si 0.877 3.123 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.278 1.278 25 C -0.111 4.111 26 H 0.071 0.929 27 C -0.138 4.138 28 C 0.119 3.881 29 C -0.161 4.161 30 C 0.030 3.970 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.178 0.822 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.045 0.955 47 H 0.087 0.913 48 H 0.066 0.934 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.991 16.778 3.740 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.036 4.036 3 C -0.166 4.166 4 C -0.150 4.150 5 C -0.085 4.085 6 N -0.003 5.003 7 C -0.121 4.121 8 C -0.169 4.169 9 C 0.375 3.625 10 O -0.435 6.435 11 N -0.327 5.327 12 C -0.024 4.024 13 C -0.189 4.189 14 C 0.075 3.925 15 H 0.077 0.923 16 N -0.387 5.387 17 C -0.368 4.368 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.582 5.582 21 Si 0.708 3.292 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.131 4.131 26 H 0.090 0.910 27 C -0.196 4.196 28 C -0.003 4.003 29 C -0.185 4.185 30 C -0.075 4.075 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.177 0.823 37 H 0.196 0.804 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.084 0.916 49 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 16.473 16.614 3.831 23.708 hybrid contribution -0.072 -0.142 1.296 1.306 sum 16.401 16.472 5.128 23.804 Atomic orbital electron populations 1.20774 0.89407 1.03799 1.03098 1.19420 0.96591 0.90082 0.97520 1.20801 0.93624 0.97911 1.04294 1.20676 0.94850 0.96963 1.02538 1.21610 0.98317 0.83164 1.05443 1.41267 1.07205 1.05330 1.46533 1.21905 0.99539 0.79871 1.10792 1.19529 0.93235 0.92979 1.11148 1.17429 0.81670 0.85522 0.77878 1.90732 1.33829 1.71369 1.47604 1.47925 1.24810 1.07181 1.52756 1.22325 0.89886 0.97060 0.93134 1.22564 1.01015 0.99809 0.95544 1.20189 0.85505 0.91769 0.95066 0.92334 1.42840 1.02877 1.86279 1.06734 1.19059 0.82440 1.40547 0.94752 0.89196 1.24625 0.95267 1.02012 0.97055 1.69691 0.97403 1.56282 1.34842 0.86671 0.76971 0.78038 0.87539 1.21130 1.21797 1.20381 1.21742 0.99268 0.96053 0.96028 0.91034 1.21679 1.01523 0.94183 1.02225 1.21641 1.02612 0.78576 0.97504 1.21438 0.98839 0.89400 1.08796 1.18651 0.81771 0.94987 1.12048 0.90383 0.90783 0.90445 0.84976 0.83816 0.82277 0.80437 0.90466 0.88901 0.93002 0.90351 0.80601 0.93124 0.91664 0.92378 0.93558 0.89454 0.91553 0.82282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.91 36.01 0.36 -0.58 16 2 C -0.04 -0.35 5.91 -104.32 -0.62 -0.97 16 3 C -0.15 -1.20 9.72 -39.50 -0.38 -1.58 16 4 C -0.13 -0.94 9.97 -39.91 -0.40 -1.34 16 5 C 0.03 0.27 10.89 -16.35 -0.18 0.09 16 6 N -0.34 -3.87 2.92 -60.42 -0.18 -4.05 16 7 C 0.01 0.16 11.48 -16.17 -0.19 -0.03 16 8 C -0.16 -2.35 5.55 -105.07 -0.58 -2.93 16 9 C 0.59 9.85 7.62 -12.49 -0.10 9.75 16 10 O -0.56 -10.68 16.43 5.28 0.09 -10.59 16 11 N -0.60 -9.73 2.97 -173.74 -0.52 -10.24 16 12 C 0.10 1.54 4.99 -3.48 -0.02 1.52 16 13 C -0.15 -2.44 5.79 -26.39 -0.15 -2.59 16 14 C 0.18 3.36 2.53 -67.89 -0.17 3.18 16 15 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 16 N -0.74 -16.28 3.44 -53.39 -0.18 -16.47 16 17 C -0.24 -6.31 10.41 -15.06 -0.16 -6.47 16 18 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 19 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -28.52 13.97 55.49 0.78 -27.75 16 21 Si 0.88 21.57 27.74 -169.99 -4.71 16.86 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 25 C -0.11 -1.77 2.67 -90.50 -0.24 -2.01 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 C -0.14 -2.13 9.05 37.15 0.34 -1.80 16 28 C 0.12 1.97 5.42 -3.71 -0.02 1.95 16 29 C -0.16 -2.14 8.00 -38.55 -0.31 -2.45 16 30 C 0.03 0.36 6.60 -84.00 -0.55 -0.20 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.18 1.87 8.06 -52.48 -0.42 1.45 16 38 H 0.08 1.35 7.73 -51.93 -0.40 0.95 16 39 H 0.09 1.31 4.15 -51.93 -0.22 1.10 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.36 7.95 3.79 -40.82 -0.15 7.79 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.06 1.14 7.53 -51.93 -0.39 0.75 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.45 7.00 -51.93 -0.36 1.08 16 48 H 0.07 1.17 6.65 -51.93 -0.35 0.82 16 49 H 0.16 2.02 6.34 -52.49 -0.33 1.69 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -32.97 384.71 -9.66 -42.63 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.26 Total: 10.18 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -3.47 Total: -6.36 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.10 Total: -58.50 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.97 -9.66 -42.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036255895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.838 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds