Wall clock time and date at job start Wed Apr 1 2020 00:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35739 * 120.33409 * 2 1 4 4 C 1.40825 * 119.71974 * 180.02562 * 3 2 1 5 5 C 1.34542 * 120.58341 * 359.97438 * 4 3 2 6 6 N 1.37432 * 120.74634 * 0.02562 * 5 4 3 7 7 C 1.35124 * 131.29081 * 179.97438 * 6 5 4 8 8 C 1.38057 * 108.77523 * 180.24349 * 7 6 5 9 9 C 1.47499 * 126.37659 * 179.76300 * 8 7 6 10 10 O 1.21595 * 119.99630 * 28.90023 * 9 8 7 11 11 N 1.34769 * 119.99857 * 208.90960 * 9 8 7 12 12 C 1.46928 * 120.63487 * 6.09649 * 11 9 8 13 13 C 1.53624 * 108.54161 * 126.37213 * 12 11 9 14 14 C 1.53042 * 109.24249 * 54.85875 * 13 12 11 15 15 H 1.09004 * 109.45835 * 178.48928 * 14 13 12 16 16 N 1.46500 * 109.44728 * 58.52452 * 14 13 12 17 17 C 1.36933 * 120.00134 * 84.93747 * 16 14 13 18 18 H 1.07998 * 119.99820 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00320 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00229 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99622 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47453 * 89.99724 * 21 19 17 23 23 H 1.48501 * 109.47176 * 209.99164 * 21 19 17 24 24 H 1.48496 * 109.47422 * 329.99471 * 21 19 17 25 25 C 1.53039 * 109.53796 * 298.50957 * 14 13 12 26 26 H 1.09002 * 109.50112 * 301.41505 * 25 14 13 27 27 C 1.52995 * 109.49702 * 181.31609 * 25 14 13 28 28 C 1.46933 * 120.62657 * 186.38102 * 11 9 8 29 29 C 1.41200 * 107.25291 * 359.61065 * 8 7 6 30 30 C 1.37958 * 119.80876 * 359.97438 * 6 5 4 31 31 H 1.09000 * 109.46549 * 269.97411 * 1 2 3 32 32 H 1.08996 * 109.47445 * 29.97296 * 1 2 3 33 33 H 1.09003 * 109.46933 * 149.97904 * 1 2 3 34 34 H 1.07998 * 120.14077 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.70651 * 180.02562 * 4 3 2 36 36 H 1.07999 * 119.62686 * 180.02562 * 5 4 3 37 37 H 1.08003 * 125.61364 * 359.97438 * 7 6 5 38 38 H 1.09003 * 109.58885 * 246.20560 * 12 11 9 39 39 H 1.08999 * 109.57999 * 6.63494 * 12 11 9 40 40 H 1.09002 * 109.63120 * 294.86618 * 13 12 11 41 41 H 1.09003 * 109.45629 * 174.74436 * 13 12 11 42 42 H 0.97000 * 119.99899 * 264.93216 * 16 14 13 43 43 H 0.96993 * 119.99637 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.47649 * 300.16049 * 27 25 14 45 45 H 1.09004 * 109.46962 * 60.16556 * 27 25 14 46 46 H 1.09004 * 109.46960 * 180.16069 * 27 25 14 47 47 H 1.08996 * 109.58975 * 353.36989 * 28 11 9 48 48 H 1.09007 * 109.58354 * 113.65259 * 28 11 9 49 49 H 1.07998 * 126.57035 * 180.14410 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1565 -0.0005 5 6 4.2728 -0.0091 -0.0006 6 7 3.6005 -1.2078 -0.0006 7 6 4.0499 -2.4821 -0.0010 8 6 2.9650 -3.3358 -0.0063 9 6 3.0119 -4.8100 -0.0135 10 8 3.9522 -5.3908 0.4936 11 7 2.0128 -5.5133 -0.5822 12 6 0.9385 -4.8292 -1.3148 13 6 0.8335 -5.4470 -2.7174 14 6 0.6417 -6.9600 -2.5891 15 1 0.5399 -7.3986 -3.5818 16 7 -0.5671 -7.2339 -1.8082 17 6 -1.7892 -7.2621 -2.4253 18 1 -1.8618 -7.0828 -3.4878 19 6 -2.9346 -7.5221 -1.6855 20 7 -4.1093 -7.5487 -2.2786 21 14 -2.8088 -7.8329 0.1522 22 1 -2.9300 -6.5451 0.8815 23 1 -3.9006 -8.7461 0.5757 24 1 -1.4960 -8.4546 0.4604 25 6 1.8541 -7.5715 -1.8834 26 1 2.7572 -7.3467 -2.4509 27 6 1.6764 -9.0879 -1.7848 28 6 1.9738 -6.9782 -0.4761 29 6 1.8020 -2.5351 -0.0001 30 6 2.2210 -1.2204 0.0000 31 1 -0.3632 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6603 2.1113 0.0004 35 1 4.1459 2.0887 -0.0001 36 1 5.3527 -0.0026 -0.0006 37 1 5.0871 -2.7832 -0.0019 38 1 -0.0050 -4.9578 -0.7843 39 1 1.1716 -3.7677 -1.3981 40 1 1.7461 -5.2421 -3.2771 41 1 -0.0193 -5.0153 -3.2414 42 1 -0.5019 -7.3953 -0.8539 43 1 -4.9096 -7.7301 -1.7615 44 1 0.7726 -9.3118 -1.2184 45 1 1.5914 -9.5096 -2.7864 46 1 2.5389 -9.5227 -1.2796 47 1 2.8900 -7.3351 -0.0058 48 1 1.1144 -7.2784 0.1236 49 1 0.7801 -2.8847 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036255895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:47 Heat of formation + Delta-G solvation = 42.598680 kcal Electronic energy + Delta-G solvation = -30366.907368 eV Core-core repulsion = 26487.675336 eV Total energy + Delta-G solvation = -3879.232033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.29617 -41.22547 -39.15431 -37.56775 -36.00364 -35.15874 -34.39322 -33.14957 -31.49197 -31.39121 -29.50802 -28.18403 -27.43752 -26.80451 -25.08715 -24.06322 -23.23852 -22.83175 -22.25136 -20.68596 -19.90704 -19.60206 -18.47309 -17.74539 -17.42120 -16.92157 -16.59044 -16.50562 -16.21529 -16.01161 -15.66217 -15.51011 -15.11456 -15.04139 -14.74600 -14.50499 -14.42961 -14.15523 -14.13012 -13.77049 -13.54828 -13.31801 -13.15557 -12.98317 -12.94715 -12.68063 -12.57667 -12.46202 -12.33948 -12.10951 -12.03085 -11.94490 -11.85599 -11.67303 -11.21756 -11.12243 -11.02645 -10.79771 -9.75090 -9.48574 -9.21442 -8.30126 -7.97001 -5.27692 -0.18998 0.37132 1.07517 1.38387 1.38551 1.45792 1.61298 2.05713 2.33051 2.50274 2.52965 3.35052 3.47909 3.60929 3.63106 3.77305 3.86113 3.98074 4.00260 4.04931 4.08677 4.17172 4.26898 4.34605 4.35168 4.47272 4.54141 4.58982 4.69606 4.74051 4.78813 4.80596 4.83399 4.87154 4.97244 5.00753 5.11682 5.14275 5.18042 5.24156 5.25173 5.27938 5.35503 5.43400 5.47516 5.58685 5.68528 5.85323 5.89499 6.27033 6.28704 6.41701 7.12017 7.13531 7.90207 8.09196 9.24908 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.003485 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.423798 B = 8033.158669 C = 9394.913636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.066 4.066 3 C -0.132 4.132 4 C -0.124 4.124 5 C 0.018 3.982 6 N -0.340 5.340 7 C 0.009 3.991 8 C -0.188 4.188 9 C 0.586 3.414 10 O -0.585 6.585 11 N -0.596 5.596 12 C 0.107 3.893 13 C -0.141 4.141 14 C 0.178 3.822 15 H 0.050 0.950 16 N -0.741 5.741 17 C -0.211 4.211 18 H 0.062 0.938 19 C -0.058 4.058 20 N -0.984 5.984 21 Si 0.937 3.063 22 H -0.281 1.281 23 H -0.300 1.300 24 H -0.257 1.257 25 C -0.100 4.100 26 H 0.088 0.912 27 C -0.135 4.135 28 C 0.120 3.880 29 C -0.185 4.185 30 C 0.027 3.973 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.160 0.840 35 H 0.183 0.817 36 H 0.192 0.808 37 H 0.194 0.806 38 H 0.057 0.943 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.362 0.638 43 H 0.255 0.745 44 H 0.042 0.958 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.054 0.946 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.646 19.394 4.486 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.067 4.067 3 C -0.152 4.152 4 C -0.144 4.144 5 C -0.099 4.099 6 N -0.003 5.003 7 C -0.125 4.125 8 C -0.196 4.196 9 C 0.377 3.623 10 O -0.467 6.467 11 N -0.326 5.326 12 C -0.015 4.015 13 C -0.182 4.182 14 C 0.070 3.930 15 H 0.068 0.932 16 N -0.385 5.385 17 C -0.343 4.343 18 H 0.080 0.920 19 C -0.249 4.249 20 N -0.635 5.635 21 Si 0.766 3.234 22 H -0.208 1.208 23 H -0.227 1.227 24 H -0.182 1.182 25 C -0.120 4.120 26 H 0.107 0.893 27 C -0.193 4.193 28 C -0.003 4.003 29 C -0.208 4.208 30 C -0.079 4.079 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.178 0.822 35 H 0.200 0.800 36 H 0.209 0.791 37 H 0.211 0.789 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.196 0.804 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 19.188 19.247 4.571 27.559 hybrid contribution -0.793 -0.739 0.987 1.466 sum 18.395 18.508 5.558 26.680 Atomic orbital electron populations 1.20781 0.88740 1.04038 1.03340 1.19661 0.97366 0.90002 0.99652 1.21291 0.94458 0.98277 1.01153 1.21224 0.94636 0.98122 1.00394 1.22350 1.00079 0.82278 1.05198 1.41465 1.07105 1.05935 1.45798 1.22060 0.99702 0.80199 1.10502 1.19415 0.94620 0.91823 1.13704 1.17764 0.81021 0.86519 0.76987 1.90699 1.34913 1.72204 1.48877 1.47942 1.24839 1.07092 1.52756 1.22235 0.88971 0.98112 0.92175 1.22445 1.01430 0.98124 0.96178 1.20397 0.85032 0.93105 0.94442 0.93160 1.42792 1.02589 1.86187 1.06945 1.18999 0.84075 1.37625 0.93552 0.92022 1.25270 0.94994 1.03378 1.01289 1.69853 0.98181 1.58992 1.36491 0.85681 0.77426 0.77842 0.82469 1.20754 1.22710 1.18224 1.21657 0.98475 0.96285 0.95575 0.89334 1.21650 1.01482 0.93761 1.02381 1.21605 1.02166 0.78958 0.97566 1.21360 0.98368 0.90183 1.10909 1.18926 0.82540 0.95290 1.11105 0.90162 0.88917 0.91851 0.82236 0.79976 0.79114 0.78928 0.92441 0.87120 0.90939 0.91684 0.80405 0.93623 0.93861 0.92019 0.91220 0.89190 0.92746 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.91 71.24 0.71 -1.01 16 2 C -0.07 -1.20 5.91 -19.67 -0.12 -1.31 16 3 C -0.13 -1.67 9.72 22.32 0.22 -1.45 16 4 C -0.12 -1.24 9.97 22.06 0.22 -1.02 16 5 C 0.02 0.23 10.89 82.97 0.90 1.14 16 6 N -0.34 -7.08 2.92 -345.06 -1.01 -8.09 16 7 C 0.01 0.22 11.48 84.14 0.97 1.19 16 8 C -0.19 -5.43 5.55 -20.15 -0.11 -5.54 16 9 C 0.59 19.63 7.62 86.69 0.66 20.29 16 10 O -0.58 -22.38 16.43 -4.01 -0.07 -22.44 16 11 N -0.60 -19.30 2.97 -821.84 -2.44 -21.74 16 12 C 0.11 3.38 4.99 86.51 0.43 3.81 16 13 C -0.14 -4.60 5.79 30.82 0.18 -4.42 16 14 C 0.18 6.44 2.53 45.02 0.11 6.56 16 15 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 16 N -0.74 -32.65 3.44 -322.81 -1.11 -33.76 16 17 C -0.21 -11.47 10.41 84.03 0.87 -10.59 16 18 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 19 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 20 N -0.98 -62.05 13.97 21.65 0.30 -61.75 16 21 Si 0.94 45.35 27.74 68.60 1.90 47.25 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 24 H -0.26 -11.43 6.52 99.48 0.65 -10.78 16 25 C -0.10 -3.08 2.67 -10.72 -0.03 -3.11 16 26 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 27 C -0.13 -3.98 9.05 71.98 0.65 -3.32 16 28 C 0.12 3.88 5.42 86.36 0.47 4.34 16 29 C -0.18 -4.94 8.00 22.94 0.18 -4.75 16 30 C 0.03 0.62 6.60 38.90 0.26 0.88 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 33 H 0.06 1.13 7.70 -2.39 -0.02 1.11 16 34 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 36 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16 37 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.06 2.05 7.73 -2.39 -0.02 2.03 16 39 H 0.11 3.16 4.15 -2.39 -0.01 3.15 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.36 15.87 3.79 -92.71 -0.35 15.52 16 43 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.04 1.46 7.53 -2.39 -0.02 1.44 16 45 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.09 2.90 7.00 -2.39 -0.02 2.88 16 48 H 0.05 1.89 6.65 -2.38 -0.02 1.87 16 49 H 0.15 4.07 6.34 -2.91 -0.02 4.05 16 Total: -1.00 -73.46 384.71 5.18 -68.28 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.55 Total: 33.44 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 7.04 Total: -1.20 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -4.25 Total: -125.33 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.07 Total: -22.44 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Total: -73.46 5.18 -68.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036255895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.882 kcal (2) G-P(sol) polarization free energy of solvation -73.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds