Wall clock time and date at job start Wed Apr 1 2020 01:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47258 * 2 1 4 4 H 1.09006 * 109.49384 * 55.06196 * 3 2 1 5 5 C 1.53199 * 109.49451 * 295.00507 * 3 2 1 6 6 N 1.46925 * 108.77023 * 185.40854 * 5 3 2 7 7 C 1.34778 * 120.63371 * 233.58129 * 6 5 3 8 8 O 1.21781 * 119.99570 * 5.64395 * 7 6 5 9 9 C 1.46205 * 120.00255 * 185.64462 * 7 6 5 10 10 C 1.41737 * 126.80142 * 40.42159 * 9 7 6 11 11 C 1.34522 * 107.77630 * 180.14650 * 10 9 7 12 12 N 1.36953 * 109.60204 * 359.61677 * 11 10 9 13 13 C 1.36704 * 131.34895 * 180.26684 * 12 11 10 14 14 C 1.34998 * 120.75618 * 179.97438 * 13 12 11 15 15 C 1.40307 * 120.37856 * 359.97438 * 14 13 12 16 16 C 1.36341 * 119.46058 * 0.02562 * 15 14 13 17 17 C 1.36944 * 108.74093 * 0.24179 * 12 11 10 18 18 C 1.46926 * 118.74127 * 53.85932 * 6 5 3 19 19 C 1.53624 * 108.54310 * 306.09455 * 18 6 5 20 20 C 1.53035 * 109.24445 * 54.85278 * 19 18 6 21 21 H 1.09004 * 109.46253 * 58.53285 * 20 19 18 22 22 N 1.46496 * 109.46163 * 178.49103 * 20 19 18 23 23 C 1.36934 * 120.00098 * 275.06837 * 22 20 19 24 24 H 1.07997 * 120.00559 * 0.02562 * 23 22 20 25 25 C 1.38813 * 120.00087 * 179.97438 * 23 22 20 26 26 N 1.31613 * 120.00198 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99862 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47174 * 89.99913 * 27 25 23 29 29 H 1.48500 * 109.46902 * 209.99996 * 27 25 23 30 30 H 1.48494 * 109.47313 * 330.00064 * 27 25 23 31 31 H 1.09007 * 109.46731 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47029 * 299.99741 * 1 2 3 33 33 H 1.08999 * 109.47290 * 60.00177 * 1 2 3 34 34 H 1.09007 * 109.47424 * 240.00666 * 2 1 3 35 35 H 1.08993 * 109.47497 * 120.00177 * 2 1 3 36 36 H 1.08997 * 109.58920 * 65.62275 * 5 3 2 37 37 H 1.08999 * 109.70476 * 305.26369 * 5 3 2 38 38 H 1.07997 * 126.11116 * 0.02562 * 10 9 7 39 39 H 1.08000 * 125.19778 * 179.88212 * 11 10 9 40 40 H 1.08004 * 119.62513 * 359.96794 * 13 12 11 41 41 H 1.07996 * 119.81233 * 180.02562 * 14 13 12 42 42 H 1.08002 * 120.27255 * 180.02562 * 15 14 13 43 43 H 1.07992 * 120.34239 * 179.97438 * 16 15 14 44 44 H 1.09008 * 109.58354 * 65.92537 * 18 6 5 45 45 H 1.08993 * 109.59028 * 186.34591 * 18 6 5 46 46 H 1.08998 * 109.63295 * 294.85888 * 19 18 6 47 47 H 1.09000 * 109.43241 * 174.72538 * 19 18 6 48 48 H 0.97002 * 119.99696 * 95.06999 * 22 20 19 49 49 H 0.97008 * 120.00007 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6349 2.1280 -1.3088 6 7 2.2413 3.4657 -1.3493 7 6 1.4815 4.5580 -1.5637 8 8 0.2696 4.4544 -1.6236 9 6 2.1121 5.8672 -1.7243 10 6 3.3014 6.1548 -2.4398 11 6 3.5336 7.4757 -2.3364 12 7 2.5430 8.0596 -1.5925 13 6 2.3396 9.3593 -1.2208 14 6 1.2707 9.7039 -0.4718 15 6 0.3477 8.7299 -0.0619 16 6 0.5387 7.4299 -0.4258 17 6 1.6559 7.0914 -1.2040 18 6 3.6928 3.5895 -1.1578 19 6 4.0740 2.8881 0.1548 20 6 3.5655 1.4450 0.1217 21 1 3.9989 0.9268 -0.7338 22 7 3.9578 0.7608 1.3562 23 6 5.1962 0.1851 1.4561 24 1 5.8840 0.2356 0.6249 25 6 5.5681 -0.4628 2.6261 26 7 6.7582 -1.0166 2.7219 27 14 4.3789 -0.5497 4.0641 28 1 3.5464 -1.7736 3.9447 29 1 5.1433 -0.5931 5.3365 30 1 3.5018 0.6484 4.0542 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 0.5496 2.2174 -1.3538 37 1 1.9887 1.5407 -2.1561 38 1 3.9129 5.4406 -2.9711 39 1 4.3709 7.9969 -2.7766 40 1 3.0422 10.1192 -1.5297 41 1 1.1246 10.7354 -0.1871 42 1 -0.5071 9.0075 0.5369 43 1 -0.1625 6.6685 -0.1179 44 1 4.2129 3.1180 -1.9917 45 1 3.9656 4.6433 -1.1032 46 1 3.6219 3.4139 0.9957 47 1 5.1584 2.8893 0.2650 48 1 3.3403 0.7157 2.1029 49 1 7.0182 -1.4690 3.5397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037881825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:12 Heat of formation + Delta-G solvation = 55.526010 kcal Electronic energy + Delta-G solvation = -30114.956980 eV Core-core repulsion = 26236.285519 eV Total energy + Delta-G solvation = -3878.671461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.50936 -39.86010 -37.69188 -36.81451 -34.68438 -33.87123 -33.16563 -31.71240 -30.37489 -29.79628 -29.12034 -27.98569 -25.32038 -24.09857 -23.77432 -23.07366 -22.12203 -21.48569 -20.74204 -19.90312 -19.09626 -17.85440 -17.42998 -16.64573 -16.43962 -16.08875 -15.65225 -15.47067 -14.99277 -14.75559 -14.53681 -14.21706 -14.08742 -13.62391 -13.54060 -13.26926 -13.12696 -12.98432 -12.72495 -12.59047 -12.33365 -12.06438 -11.92030 -11.89509 -11.69823 -11.53487 -11.34798 -10.98336 -10.95379 -10.72285 -10.55181 -10.39791 -10.25217 -10.16104 -9.71280 -9.64370 -9.55248 -8.94136 -8.81974 -8.38806 -7.55963 -7.23833 -5.76305 -3.10951 0.50388 1.01089 2.26111 2.38073 3.02902 3.22217 3.38359 3.42020 3.46288 3.54326 4.18427 4.50238 4.52676 4.60115 4.63949 4.80109 4.94370 5.02848 5.10267 5.16053 5.29740 5.33506 5.42882 5.47787 5.49043 5.55295 5.58585 5.60074 5.68274 5.72129 5.84982 5.89515 5.99929 6.01778 6.06275 6.09554 6.12738 6.19715 6.31574 6.37043 6.41280 6.45405 6.56076 6.61447 6.68307 6.76754 6.90031 6.97823 7.02971 7.65918 8.00212 8.41821 8.43152 9.21881 9.94870 10.15314 11.42160 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.003017 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.532283 B = 9279.852662 C = 9934.846142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.068 0.932 5 C 0.121 3.879 6 N -0.601 5.601 7 C 0.593 3.407 8 O -0.557 6.557 9 C -0.228 4.228 10 C -0.105 4.105 11 C -0.063 4.063 12 N -0.340 5.340 13 C 0.048 3.952 14 C -0.144 4.144 15 C -0.120 4.120 16 C -0.080 4.080 17 C 0.102 3.898 18 C 0.102 3.898 19 C -0.150 4.150 20 C 0.188 3.812 21 H 0.057 0.943 22 N -0.746 5.746 23 C -0.239 4.239 24 H 0.090 0.910 25 C 0.005 3.995 26 N -0.935 5.935 27 Si 0.881 3.119 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.278 1.278 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.156 0.844 39 H 0.173 0.827 40 H 0.163 0.837 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.148 0.852 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.078 0.922 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.499 20.819 -10.465 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.001 4.001 6 N -0.332 5.332 7 C 0.383 3.617 8 O -0.437 6.437 9 C -0.237 4.237 10 C -0.127 4.127 11 C -0.189 4.189 12 N -0.004 5.004 13 C -0.073 4.073 14 C -0.164 4.164 15 C -0.141 4.141 16 C -0.099 4.099 17 C -0.006 4.006 18 C -0.021 4.021 19 C -0.191 4.191 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.369 4.369 24 H 0.108 0.892 25 C -0.191 4.191 26 N -0.583 5.583 27 Si 0.711 3.289 28 H -0.211 1.211 29 H -0.219 1.219 30 H -0.204 1.204 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.173 0.827 39 H 0.191 0.809 40 H 0.180 0.820 41 H 0.164 0.836 42 H 0.155 0.845 43 H 0.166 0.834 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.097 0.903 48 H 0.193 0.807 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.784 20.877 -10.550 25.758 hybrid contribution -0.458 -0.001 1.217 1.301 sum -11.242 20.876 -9.332 25.481 Atomic orbital electron populations 1.21854 0.96657 1.01091 1.01494 1.21458 0.94526 0.95779 1.03325 1.21820 0.97551 0.96156 0.97244 0.91326 1.21694 0.99515 0.81509 0.97403 1.47959 1.08556 1.06338 1.70382 1.17095 0.85894 0.82918 0.75799 1.90770 1.13843 1.86342 1.52698 1.19311 1.00782 0.91857 1.11772 1.21075 0.96032 0.94776 1.00788 1.21692 0.96926 0.93830 1.06405 1.41483 1.18585 1.06157 1.34133 1.21673 1.00579 0.84330 1.00699 1.20760 0.94597 1.01047 1.00017 1.21084 0.99954 0.92410 1.00648 1.20736 0.95446 0.97512 0.96164 1.18558 0.92826 0.87694 1.01552 1.22148 0.79304 1.02032 0.98597 1.22697 1.02335 0.98571 0.95489 1.20170 0.90718 0.90711 0.90528 0.92546 1.42791 1.16586 1.66292 1.13063 1.19057 0.90651 1.26782 1.00404 0.89203 1.24643 0.96413 1.00384 0.97639 1.69696 1.19284 1.41720 1.27588 0.86605 0.80979 0.77835 0.83462 1.21072 1.21863 1.20373 0.93107 0.93104 0.92881 0.91930 0.90601 0.89093 0.91592 0.82660 0.80928 0.81971 0.83555 0.84538 0.83446 0.91595 0.89338 0.92447 0.90309 0.80664 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C -0.11 -1.73 1.93 -90.50 -0.17 -1.91 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 5 C 0.12 1.79 5.33 -3.71 -0.02 1.77 16 6 N -0.60 -8.89 2.97 -174.20 -0.52 -9.41 16 7 C 0.59 9.45 7.53 -13.06 -0.10 9.35 16 8 O -0.56 -10.32 16.47 5.12 0.08 -10.24 16 9 C -0.23 -3.15 5.25 -104.46 -0.55 -3.70 16 10 C -0.11 -1.14 8.39 -39.56 -0.33 -1.48 16 11 C -0.06 -0.59 11.53 -16.58 -0.19 -0.78 16 12 N -0.34 -3.51 2.92 -60.81 -0.18 -3.68 16 13 C 0.05 0.36 10.89 -16.53 -0.18 0.18 16 14 C -0.14 -0.98 9.98 -39.95 -0.40 -1.38 16 15 C -0.12 -1.02 10.09 -39.49 -0.40 -1.42 16 16 C -0.08 -0.93 10.06 -39.49 -0.40 -1.32 16 17 C 0.10 1.32 6.71 -83.91 -0.56 0.76 16 18 C 0.10 1.40 5.52 -3.49 -0.02 1.38 16 19 C -0.15 -2.53 5.67 -26.39 -0.15 -2.68 16 20 C 0.19 3.48 2.19 -67.90 -0.15 3.34 16 21 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 22 N -0.75 -17.04 4.14 -53.39 -0.22 -17.26 16 23 C -0.24 -6.52 10.41 -15.06 -0.16 -6.68 16 24 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 25 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 26 N -0.93 -29.03 13.97 55.49 0.78 -28.26 16 27 Si 0.88 22.06 27.74 -169.99 -4.71 17.35 16 28 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 30 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16 31 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 34 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.08 1.36 7.22 -51.93 -0.37 0.98 16 36 H 0.09 1.39 5.71 -51.93 -0.30 1.09 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.16 1.40 7.39 -52.49 -0.39 1.01 16 39 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.16 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.15 1.78 8.02 -52.49 -0.42 1.36 16 44 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 45 H 0.09 1.11 4.78 -51.93 -0.25 0.86 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.36 8.31 5.37 -40.82 -0.22 8.09 16 49 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -34.37 387.90 -9.96 -44.33 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -7.38 Total: 9.44 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -3.65 Total: -8.11 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.14 Total: -58.61 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.37 -9.96 -44.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037881825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.858 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds