Wall clock time and date at job start Wed Apr 1 2020 01:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47258 * 2 1 4 4 H 1.09006 * 109.49384 * 55.06196 * 3 2 1 5 5 C 1.53199 * 109.49451 * 295.00507 * 3 2 1 6 6 N 1.46925 * 108.77023 * 185.40854 * 5 3 2 7 7 C 1.34778 * 120.63371 * 233.58129 * 6 5 3 8 8 O 1.21781 * 119.99570 * 5.64395 * 7 6 5 9 9 C 1.46205 * 120.00255 * 185.64462 * 7 6 5 10 10 C 1.41737 * 126.80142 * 40.42159 * 9 7 6 11 11 C 1.34522 * 107.77630 * 180.14650 * 10 9 7 12 12 N 1.36953 * 109.60204 * 359.61677 * 11 10 9 13 13 C 1.36704 * 131.34895 * 180.26684 * 12 11 10 14 14 C 1.34998 * 120.75618 * 179.97438 * 13 12 11 15 15 C 1.40307 * 120.37856 * 359.97438 * 14 13 12 16 16 C 1.36341 * 119.46058 * 0.02562 * 15 14 13 17 17 C 1.36944 * 108.74093 * 0.24179 * 12 11 10 18 18 C 1.46926 * 118.74127 * 53.85932 * 6 5 3 19 19 C 1.53624 * 108.54310 * 306.09455 * 18 6 5 20 20 C 1.53035 * 109.24445 * 54.85278 * 19 18 6 21 21 H 1.09004 * 109.46253 * 58.53285 * 20 19 18 22 22 N 1.46496 * 109.46163 * 178.49103 * 20 19 18 23 23 C 1.36934 * 120.00098 * 275.06837 * 22 20 19 24 24 H 1.07997 * 120.00559 * 0.02562 * 23 22 20 25 25 C 1.38813 * 120.00087 * 179.97438 * 23 22 20 26 26 N 1.31613 * 120.00198 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99862 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47174 * 89.99913 * 27 25 23 29 29 H 1.48500 * 109.46902 * 209.99996 * 27 25 23 30 30 H 1.48494 * 109.47313 * 330.00064 * 27 25 23 31 31 H 1.09007 * 109.46731 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47029 * 299.99741 * 1 2 3 33 33 H 1.08999 * 109.47290 * 60.00177 * 1 2 3 34 34 H 1.09007 * 109.47424 * 240.00666 * 2 1 3 35 35 H 1.08993 * 109.47497 * 120.00177 * 2 1 3 36 36 H 1.08997 * 109.58920 * 65.62275 * 5 3 2 37 37 H 1.08999 * 109.70476 * 305.26369 * 5 3 2 38 38 H 1.07997 * 126.11116 * 0.02562 * 10 9 7 39 39 H 1.08000 * 125.19778 * 179.88212 * 11 10 9 40 40 H 1.08004 * 119.62513 * 359.96794 * 13 12 11 41 41 H 1.07996 * 119.81233 * 180.02562 * 14 13 12 42 42 H 1.08002 * 120.27255 * 180.02562 * 15 14 13 43 43 H 1.07992 * 120.34239 * 179.97438 * 16 15 14 44 44 H 1.09008 * 109.58354 * 65.92537 * 18 6 5 45 45 H 1.08993 * 109.59028 * 186.34591 * 18 6 5 46 46 H 1.08998 * 109.63295 * 294.85888 * 19 18 6 47 47 H 1.09000 * 109.43241 * 174.72538 * 19 18 6 48 48 H 0.97002 * 119.99696 * 95.06999 * 22 20 19 49 49 H 0.97008 * 120.00007 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6349 2.1280 -1.3088 6 7 2.2413 3.4657 -1.3493 7 6 1.4815 4.5580 -1.5637 8 8 0.2696 4.4544 -1.6236 9 6 2.1121 5.8672 -1.7243 10 6 3.3014 6.1548 -2.4398 11 6 3.5336 7.4757 -2.3364 12 7 2.5430 8.0596 -1.5925 13 6 2.3396 9.3593 -1.2208 14 6 1.2707 9.7039 -0.4718 15 6 0.3477 8.7299 -0.0619 16 6 0.5387 7.4299 -0.4258 17 6 1.6559 7.0914 -1.2040 18 6 3.6928 3.5895 -1.1578 19 6 4.0740 2.8881 0.1548 20 6 3.5655 1.4450 0.1217 21 1 3.9989 0.9268 -0.7338 22 7 3.9578 0.7608 1.3562 23 6 5.1962 0.1851 1.4561 24 1 5.8840 0.2356 0.6249 25 6 5.5681 -0.4628 2.6261 26 7 6.7582 -1.0166 2.7219 27 14 4.3789 -0.5497 4.0641 28 1 3.5464 -1.7736 3.9447 29 1 5.1433 -0.5931 5.3365 30 1 3.5018 0.6484 4.0542 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 0.5496 2.2174 -1.3538 37 1 1.9887 1.5407 -2.1561 38 1 3.9129 5.4406 -2.9711 39 1 4.3709 7.9969 -2.7766 40 1 3.0422 10.1192 -1.5297 41 1 1.1246 10.7354 -0.1871 42 1 -0.5071 9.0075 0.5369 43 1 -0.1625 6.6685 -0.1179 44 1 4.2129 3.1180 -1.9917 45 1 3.9656 4.6433 -1.1032 46 1 3.6219 3.4139 0.9957 47 1 5.1584 2.8893 0.2650 48 1 3.3403 0.7157 2.1029 49 1 7.0182 -1.4690 3.5397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037881825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:11 Heat of formation + Delta-G solvation = 35.834529 kcal Electronic energy + Delta-G solvation = -30115.810867 eV Core-core repulsion = 26236.285519 eV Total energy + Delta-G solvation = -3879.525348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.25276 -41.08915 -39.04429 -37.53129 -36.20677 -35.34594 -33.94467 -33.59757 -31.48062 -31.11148 -30.20373 -28.92728 -26.73858 -25.29801 -24.56315 -24.53004 -23.27336 -22.38842 -22.08873 -21.29133 -20.24591 -19.45436 -18.62395 -17.52379 -17.41520 -16.99398 -16.74074 -16.47688 -16.26907 -15.99984 -15.88451 -15.32997 -15.25523 -15.03860 -14.70528 -14.63293 -14.53759 -14.12844 -14.01506 -13.82879 -13.56333 -13.23964 -13.08806 -12.92020 -12.81816 -12.65783 -12.55729 -12.53363 -12.27844 -12.11062 -12.06693 -11.84236 -11.61782 -11.55521 -11.38307 -11.11888 -10.99392 -10.79440 -9.64050 -9.60225 -9.25088 -8.32004 -7.99650 -5.31006 -0.19971 0.29262 1.37053 1.37616 1.38524 1.45540 1.67120 2.05628 2.29710 2.49035 2.61644 3.31791 3.52533 3.58567 3.69137 3.83328 3.88016 3.96345 4.01526 4.04118 4.11134 4.24036 4.27735 4.31154 4.37687 4.45372 4.49306 4.62976 4.69313 4.76251 4.79465 4.82306 4.85460 4.91974 4.93900 5.00757 5.05122 5.14486 5.19809 5.26507 5.32148 5.34077 5.37317 5.45618 5.51198 5.63999 5.72727 5.81059 5.87153 6.24767 6.32757 6.49689 7.10304 7.24298 7.87315 8.06174 9.21995 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.003017 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.532283 B = 9279.852662 C = 9934.846142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.095 4.095 4 H 0.055 0.945 5 C 0.126 3.874 6 N -0.602 5.602 7 C 0.590 3.410 8 O -0.595 6.595 9 C -0.275 4.275 10 C -0.115 4.115 11 C -0.056 4.056 12 N -0.343 5.343 13 C 0.051 3.949 14 C -0.149 4.149 15 C -0.097 4.097 16 C -0.130 4.130 17 C 0.087 3.913 18 C 0.114 3.886 19 C -0.141 4.141 20 C 0.184 3.816 21 H 0.052 0.948 22 N -0.747 5.747 23 C -0.216 4.216 24 H 0.063 0.937 25 C -0.061 4.061 26 N -0.983 5.983 27 Si 0.944 3.056 28 H -0.279 1.279 29 H -0.298 1.298 30 H -0.261 1.261 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.170 0.830 39 H 0.213 0.787 40 H 0.206 0.794 41 H 0.187 0.813 42 H 0.160 0.840 43 H 0.125 0.875 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.044 0.956 47 H 0.065 0.935 48 H 0.361 0.639 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.165 24.156 -11.251 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.115 4.115 4 H 0.074 0.926 5 C 0.003 3.997 6 N -0.333 5.333 7 C 0.382 3.618 8 O -0.477 6.477 9 C -0.285 4.285 10 C -0.136 4.136 11 C -0.180 4.180 12 N -0.007 5.007 13 C -0.070 4.070 14 C -0.168 4.168 15 C -0.118 4.118 16 C -0.149 4.149 17 C -0.023 4.023 18 C -0.009 4.009 19 C -0.182 4.182 20 C 0.076 3.924 21 H 0.070 0.930 22 N -0.389 5.389 23 C -0.347 4.347 24 H 0.081 0.919 25 C -0.252 4.252 26 N -0.635 5.635 27 Si 0.773 3.227 28 H -0.206 1.206 29 H -0.225 1.225 30 H -0.186 1.186 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.187 0.813 39 H 0.230 0.770 40 H 0.223 0.777 41 H 0.204 0.796 42 H 0.177 0.823 43 H 0.143 0.857 44 H 0.104 0.896 45 H 0.122 0.878 46 H 0.062 0.938 47 H 0.083 0.917 48 H 0.194 0.806 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.469 24.245 -11.374 29.133 hybrid contribution -0.272 -0.839 1.399 1.654 sum -11.740 23.406 -9.975 28.021 Atomic orbital electron populations 1.21793 0.94746 1.02068 1.01834 1.21418 0.96209 0.94894 1.02375 1.21674 0.95391 0.96778 0.97700 0.92607 1.21635 0.99387 0.81757 0.96909 1.48000 1.08874 1.06186 1.70192 1.17503 0.85504 0.83858 0.74885 1.90726 1.15475 1.86946 1.54598 1.19280 1.02963 0.91189 1.15036 1.21295 0.95306 0.96144 1.00812 1.22292 0.97106 0.93461 1.05117 1.41773 1.18176 1.06840 1.33917 1.22553 1.01268 0.83749 0.99391 1.21282 0.93719 1.02444 0.99366 1.21514 1.00378 0.91443 0.98506 1.20703 0.96242 0.98698 0.99252 1.18723 0.93553 0.88290 1.01688 1.22115 0.78821 1.02786 0.97175 1.22517 1.01163 0.97447 0.97082 1.20384 0.92496 0.91091 0.88455 0.92952 1.42809 1.15064 1.66485 1.14584 1.19018 0.91428 1.25145 0.99113 0.91862 1.25341 0.98111 1.01191 1.00589 1.69858 1.21535 1.43773 1.28303 0.85563 0.78962 0.78493 0.79681 1.20560 1.22519 1.18566 0.91810 0.93380 0.91942 0.91361 0.92993 0.89522 0.90018 0.81310 0.77022 0.77701 0.79555 0.82279 0.85711 0.89645 0.87758 0.93755 0.91658 0.80614 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.67 71.98 0.70 -3.09 16 2 C -0.11 -3.40 5.31 30.59 0.16 -3.24 16 3 C -0.10 -3.07 1.93 -10.71 -0.02 -3.09 16 4 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 5 C 0.13 3.67 5.33 86.37 0.46 4.13 16 6 N -0.60 -17.83 2.97 -823.24 -2.44 -20.27 16 7 C 0.59 19.33 7.53 86.31 0.65 19.98 16 8 O -0.59 -23.10 16.47 -4.61 -0.08 -23.17 16 9 C -0.28 -7.64 5.25 -19.76 -0.10 -7.75 16 10 C -0.11 -2.32 8.39 22.28 0.19 -2.14 16 11 C -0.06 -0.87 11.53 83.04 0.96 0.09 16 12 N -0.34 -6.21 2.92 -346.29 -1.01 -7.22 16 13 C 0.05 0.54 10.89 83.19 0.91 1.44 16 14 C -0.15 -1.43 9.98 22.03 0.22 -1.21 16 15 C -0.10 -1.47 10.09 22.33 0.23 -1.24 16 16 C -0.13 -3.07 10.06 22.33 0.22 -2.85 16 17 C 0.09 2.23 6.71 39.43 0.26 2.50 16 18 C 0.11 3.03 5.52 86.51 0.48 3.51 16 19 C -0.14 -4.79 5.67 30.82 0.17 -4.62 16 20 C 0.18 6.84 2.19 45.02 0.10 6.94 16 21 H 0.05 2.01 8.08 -2.38 -0.02 1.99 16 22 N -0.75 -34.47 4.14 -322.84 -1.34 -35.80 16 23 C -0.22 -12.03 10.41 84.03 0.87 -11.15 16 24 H 0.06 3.82 8.06 -2.91 -0.02 3.79 16 25 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 26 N -0.98 -62.79 13.97 21.65 0.30 -62.49 16 27 Si 0.94 46.26 27.74 68.60 1.90 48.17 16 28 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 29 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 30 H -0.26 -11.86 6.52 99.48 0.65 -11.21 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.49 6.70 -2.39 -0.02 1.48 16 34 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.05 1.85 7.22 -2.39 -0.02 1.83 16 36 H 0.09 2.66 5.71 -2.39 -0.01 2.65 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.17 2.73 7.39 -2.91 -0.02 2.71 16 39 H 0.21 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.21 0.32 8.06 -2.91 -0.02 0.30 16 41 H 0.19 0.29 8.06 -2.91 -0.02 0.26 16 42 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.12 3.35 8.02 -2.91 -0.02 3.33 16 44 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.10 2.52 4.78 -2.39 -0.01 2.51 16 46 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.36 16.59 5.37 -92.71 -0.50 16.10 16 49 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -78.98 387.90 4.66 -74.32 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.40 Total: 31.37 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 6.92 Total: -4.90 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -4.49 Total: -125.78 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.08 Total: -23.17 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.90 Total: 48.17 kcal Total: -78.98 4.66 -74.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037881825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.155 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds