Wall clock time and date at job start Wed Apr 1 2020 00:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35473 * 124.78827 * 2 1 4 4 C 1.36369 * 109.76633 * 179.97438 * 3 2 1 5 5 C 1.46917 * 126.76370 * 179.97438 * 4 3 2 6 6 O 1.21675 * 119.99576 * 180.02562 * 5 4 3 7 7 N 1.34769 * 120.00380 * 0.02958 * 5 4 3 8 8 C 1.46502 * 120.00499 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.45730 * 60.02567 * 8 7 5 10 10 C 1.53044 * 109.45798 * 300.06845 * 8 7 5 11 11 C 1.53194 * 109.30932 * 301.34225 * 10 8 7 12 12 N 1.46922 * 108.77778 * 305.36474 * 11 10 8 13 13 C 1.36941 * 120.63189 * 233.63416 * 12 11 10 14 14 H 1.07997 * 119.99547 * 27.66444 * 13 12 11 15 15 C 1.38808 * 119.99816 * 207.66446 * 13 12 11 16 16 N 1.31617 * 120.00201 * 17.36353 * 15 13 12 17 17 Si 1.86803 * 119.99729 * 197.36110 * 15 13 12 18 18 H 1.48502 * 109.47423 * 90.00057 * 17 15 13 19 19 H 1.48501 * 109.46988 * 210.00232 * 17 15 13 20 20 H 1.48498 * 109.47193 * 330.00249 * 17 15 13 21 21 C 1.46928 * 118.74109 * 53.61012 * 12 11 10 22 22 C 1.53037 * 109.46075 * 179.97438 * 8 7 5 23 23 C 1.47444 * 106.46674 * 0.02562 * 4 3 2 24 24 C 1.39273 * 134.00315 * 180.02562 * 23 4 3 25 25 C 1.37757 * 119.66845 * 179.97438 * 24 23 4 26 26 C 1.38760 * 120.30215 * 0.02562 * 25 24 23 27 27 C 1.37767 * 120.63224 * 359.97438 * 26 25 24 28 28 C 1.37964 * 124.78522 * 179.70514 * 2 1 3 29 29 H 1.09001 * 109.47439 * 90.02242 * 1 2 3 30 30 H 1.09009 * 109.47169 * 210.02475 * 1 2 3 31 31 H 1.08994 * 109.46873 * 330.01834 * 1 2 3 32 32 H 1.08001 * 125.11381 * 0.02562 * 3 2 1 33 33 H 0.97002 * 119.99785 * 359.97438 * 7 5 4 34 34 H 1.08997 * 109.46897 * 60.00208 * 9 8 7 35 35 H 1.09000 * 109.46445 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.46846 * 300.00033 * 9 8 7 37 37 H 1.08996 * 109.49447 * 61.29164 * 10 8 7 38 38 H 1.08995 * 109.49436 * 181.39246 * 10 8 7 39 39 H 1.09007 * 109.58251 * 185.58089 * 11 10 8 40 40 H 1.08996 * 109.70447 * 65.22760 * 11 10 8 41 41 H 0.97005 * 119.99753 * 179.97438 * 16 15 13 42 42 H 1.08990 * 109.58807 * 186.60696 * 21 12 11 43 43 H 1.08996 * 109.70061 * 66.24737 * 21 12 11 44 44 H 1.09007 * 109.49788 * 178.60483 * 22 8 7 45 45 H 1.09001 * 109.49835 * 298.67191 * 22 8 7 46 46 H 1.07998 * 120.16724 * 359.97438 * 24 23 4 47 47 H 1.08004 * 119.85273 * 180.02562 * 25 24 23 48 48 H 1.07989 * 119.68225 * 180.02562 * 26 25 24 49 49 H 1.07995 * 120.03559 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5550 0.7591 0.0006 5 6 4.7093 1.6680 0.0002 6 8 5.8392 1.2163 0.0004 7 7 4.5169 3.0018 -0.0001 8 6 5.6679 3.9081 0.0001 9 6 6.5147 3.6569 -1.2492 10 6 6.5153 3.6557 1.2493 11 6 5.6549 3.8747 2.4978 12 7 5.0603 5.2167 2.4330 13 6 5.2120 6.0979 3.4702 14 1 6.0791 6.0338 4.1107 15 6 4.2511 7.0733 3.6982 16 7 3.0541 6.9557 3.1636 17 14 4.6568 8.5528 4.7640 18 1 5.2021 9.6411 3.9134 19 1 3.4242 9.0262 5.4437 20 1 5.6667 8.1674 5.7822 21 6 4.3004 5.5956 1.2339 22 6 5.1759 5.3572 -0.0010 23 6 3.5922 -0.7148 0.0003 24 6 4.6181 -1.6568 0.0011 25 6 4.3107 -2.9997 0.0011 26 6 2.9867 -3.4149 -0.0002 27 6 1.9622 -2.4938 -0.0010 28 6 2.2521 -1.1331 0.0058 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5135 32 1 1.8668 2.1268 0.0004 33 1 3.6161 3.3619 -0.0005 34 1 5.9113 3.8359 -2.1391 35 1 7.3714 4.3308 -1.2489 36 1 6.8648 2.6246 -1.2492 37 1 6.8846 2.6303 1.2373 38 1 7.3583 4.3465 1.2627 39 1 6.2771 3.7934 3.3891 40 1 4.8638 3.1259 2.5349 41 1 2.3826 7.6373 3.3234 42 1 4.0289 6.6496 1.2913 43 1 3.3976 4.9889 1.1642 44 1 6.0316 6.0321 0.0242 45 1 4.5927 5.5427 -0.9030 46 1 5.6493 -1.3361 0.0017 47 1 5.1039 -3.7327 0.0021 48 1 2.7572 -4.4701 0.0002 49 1 0.9352 -2.8277 -0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045495039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:21 Heat of formation + Delta-G solvation = 50.377915 kcal Electronic energy + Delta-G solvation = -30480.238141 eV Core-core repulsion = 26601.343441 eV Total energy + Delta-G solvation = -3878.894700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.54503 -39.70880 -37.17801 -37.08534 -34.30127 -33.11265 -31.82978 -30.77827 -30.36988 -29.86226 -28.85380 -27.35848 -26.74899 -24.06514 -23.15306 -22.56850 -22.19930 -21.27262 -20.83003 -19.60385 -18.53947 -17.68187 -16.80465 -16.48043 -15.75642 -15.66312 -15.52117 -14.84859 -14.65864 -14.38941 -14.11005 -14.00276 -13.79650 -13.42131 -13.28295 -13.16691 -13.05168 -12.91242 -12.79240 -12.63215 -12.29689 -11.74847 -11.64004 -11.56490 -11.42776 -11.25419 -11.14818 -10.98892 -10.88128 -10.71207 -10.32082 -10.23552 -9.84102 -9.70184 -9.64077 -9.55522 -9.02521 -8.52426 -8.42464 -8.31993 -7.70428 -6.64115 -5.78831 -3.19059 0.98058 1.51811 2.09617 2.56551 3.38098 3.45118 3.46596 3.61468 3.67495 4.03711 4.46903 4.51112 4.53798 4.66055 4.88848 4.94624 5.05464 5.14197 5.19864 5.35342 5.39314 5.44993 5.48882 5.54629 5.61177 5.65418 5.69120 5.78377 6.01458 6.10190 6.13487 6.27041 6.35872 6.37862 6.40104 6.50834 6.53421 6.57992 6.63924 6.68361 6.80194 6.80385 6.91442 7.02810 7.05539 7.09725 7.19782 7.33062 7.59686 7.80852 8.08349 8.46253 8.76460 9.23004 9.86812 10.43948 11.29784 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.003095 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.350801 B = 9043.263540 C = 9865.619532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.475 5.475 3 C 0.106 3.894 4 C -0.220 4.220 5 C 0.592 3.408 6 O -0.545 6.545 7 N -0.709 5.709 8 C 0.187 3.813 9 C -0.160 4.160 10 C -0.142 4.142 11 C 0.151 3.849 12 N -0.591 5.591 13 C -0.246 4.246 14 H 0.065 0.935 15 C 0.000 4.000 16 N -0.906 5.906 17 Si 0.901 3.099 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.174 3.826 22 C -0.146 4.146 23 C -0.061 4.061 24 C -0.059 4.059 25 C -0.147 4.147 26 C -0.103 4.103 27 C -0.129 4.129 28 C 0.085 3.915 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.177 0.823 33 H 0.395 0.605 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.016 0.984 41 H 0.252 0.748 42 H 0.088 0.912 43 H 0.014 0.986 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.134 0.866 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.235 -15.766 -10.474 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.156 5.156 3 C -0.025 4.025 4 C -0.231 4.231 5 C 0.380 3.620 6 O -0.425 6.425 7 N -0.360 5.360 8 C 0.102 3.898 9 C -0.218 4.218 10 C -0.182 4.182 11 C 0.025 3.975 12 N -0.314 5.314 13 C -0.376 4.376 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.551 5.551 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.219 1.219 20 H -0.205 1.205 21 C 0.047 3.953 22 C -0.186 4.186 23 C -0.066 4.066 24 C -0.078 4.078 25 C -0.166 4.166 26 C -0.122 4.122 27 C -0.150 4.150 28 C -0.019 4.019 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.194 0.806 33 H 0.230 0.770 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.032 0.968 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.152 0.848 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.913 -15.942 -10.425 19.671 hybrid contribution -0.605 1.127 0.595 1.410 sum -5.517 -14.815 -9.830 18.616 Atomic orbital electron populations 1.22055 0.76683 1.04737 1.03296 1.43567 1.06306 1.04328 1.61420 1.22157 0.90009 0.91536 0.98782 1.20200 0.92273 0.92533 1.18075 1.17089 0.87582 0.81504 0.75857 1.90668 1.23836 1.76852 1.51098 1.45973 1.09989 1.05160 1.74834 1.20226 0.85445 0.89185 0.94994 1.22226 0.99591 1.03296 0.96693 1.22383 0.98460 1.01870 0.95477 1.20832 0.94445 0.87536 0.94724 1.44048 1.61703 1.09910 1.15733 1.19233 1.02403 1.08529 1.07460 0.91720 1.24992 0.94565 1.00817 0.99390 1.70020 1.02435 1.34285 1.48340 0.86297 0.77187 0.83293 0.80065 1.21514 1.21877 1.20482 1.20721 0.90409 1.01478 0.82657 1.22534 1.01792 0.93735 1.00514 1.18767 0.91971 0.91684 1.04150 1.20725 0.99149 0.91473 0.96439 1.20955 0.96307 0.95458 1.03910 1.20773 0.92346 0.98669 1.00412 1.19944 0.99440 0.88936 1.06653 1.18275 0.89882 0.88212 1.05525 0.90911 0.89886 0.89306 0.80589 0.77034 0.93475 0.92405 0.90780 0.90729 0.92000 0.93255 0.96597 0.93806 0.89353 0.96841 0.91076 0.92855 0.84829 0.85937 0.85876 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 10.99 59.85 0.66 1.15 16 2 N -0.47 -5.25 3.14 -121.60 -0.38 -5.63 16 3 C 0.11 1.30 10.76 -16.62 -0.18 1.12 16 4 C -0.22 -3.37 6.27 -103.31 -0.65 -4.01 16 5 C 0.59 10.14 7.21 -12.75 -0.09 10.05 16 6 O -0.55 -10.59 12.37 5.21 0.06 -10.53 16 7 N -0.71 -11.55 4.09 -48.78 -0.20 -11.75 16 8 C 0.19 3.24 0.66 -131.78 -0.09 3.15 16 9 C -0.16 -2.52 8.40 37.16 0.31 -2.21 16 10 C -0.14 -2.75 4.67 -26.61 -0.12 -2.87 16 11 C 0.15 3.34 6.25 -3.71 -0.02 3.32 16 12 N -0.59 -14.62 3.00 -172.29 -0.52 -15.14 16 13 C -0.25 -6.74 9.58 -15.06 -0.14 -6.89 16 14 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 15 C 0.00 0.01 4.91 -17.43 -0.09 -0.08 16 16 N -0.91 -25.52 11.19 55.49 0.62 -24.90 16 17 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 C 0.17 3.89 5.04 -3.68 -0.02 3.88 16 22 C -0.15 -2.65 4.96 -26.59 -0.13 -2.79 16 23 C -0.06 -0.92 6.27 -104.95 -0.66 -1.58 16 24 C -0.06 -0.84 9.85 -39.37 -0.39 -1.23 16 25 C -0.15 -1.68 10.03 -39.56 -0.40 -2.07 16 26 C -0.10 -1.04 10.01 -39.56 -0.40 -1.44 16 27 C -0.13 -1.37 9.91 -39.42 -0.39 -1.76 16 28 C 0.08 1.09 6.79 -83.96 -0.57 0.52 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.46 8.03 -51.92 -0.42 0.04 16 31 H 0.09 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.18 1.70 7.38 -52.49 -0.39 1.31 16 33 H 0.39 5.90 6.15 -40.82 -0.25 5.65 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.27 6.16 -51.93 -0.32 0.95 16 37 H 0.07 1.48 6.20 -51.93 -0.32 1.16 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.11 7.93 -51.92 -0.41 0.69 16 40 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.09 2.25 6.03 -51.93 -0.31 1.94 16 43 H 0.01 0.31 6.94 -51.93 -0.36 -0.05 16 44 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.13 1.99 7.45 -52.49 -0.39 1.59 16 47 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 49 H 0.12 0.93 8.02 -52.49 -0.42 0.51 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -32.67 384.59 -10.36 -43.02 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.35 Total: 6.31 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -3.36 Total: -3.74 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.48 Total: -57.42 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.06 Total: -10.53 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.67 -10.36 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045495039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.403 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds