Wall clock time and date at job start Wed Apr 1 2020 01:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46825 * 2 1 4 4 H 1.09008 * 109.47115 * 179.00973 * 3 2 1 5 5 S 1.81401 * 109.47143 * 299.00303 * 3 2 1 6 6 C 1.81402 * 103.00423 * 288.27434 * 5 3 2 7 7 C 1.50699 * 109.47688 * 59.00778 * 3 2 1 8 8 O 1.21276 * 120.00035 * 265.00234 * 7 3 2 9 9 N 1.34775 * 119.99827 * 84.99310 * 7 3 2 10 10 C 1.47078 * 120.87674 * 180.02562 * 9 7 3 11 11 C 1.53243 * 108.51777 * 128.84128 * 10 9 7 12 12 N 1.46898 * 109.34109 * 53.83059 * 11 10 9 13 13 C 1.46903 * 110.99744 * 172.74771 * 12 11 10 14 14 H 1.09001 * 110.64463 * 56.68523 * 13 12 11 15 15 C 1.55164 * 110.71814 * 180.02562 * 13 12 11 16 16 C 1.54905 * 101.57997 * 153.86362 * 15 13 12 17 17 N 1.47426 * 104.83560 * 322.98709 * 16 15 13 18 18 C 1.36931 * 125.65236 * 204.16290 * 17 16 15 19 19 H 1.07999 * 120.00359 * 154.61237 * 18 17 16 20 20 C 1.38815 * 120.00114 * 334.61743 * 18 17 16 21 21 N 1.31620 * 119.99984 * 156.31732 * 20 18 17 22 22 Si 1.86795 * 119.99758 * 336.31734 * 20 18 17 23 23 H 1.48502 * 109.47393 * 88.28119 * 22 20 18 24 24 H 1.48500 * 109.47117 * 208.28119 * 22 20 18 25 25 H 1.48500 * 109.47299 * 328.28061 * 22 20 18 26 26 C 1.47026 * 108.69825 * 24.13058 * 17 16 15 27 27 C 1.46902 * 111.26606 * 296.89243 * 12 11 10 28 28 C 1.47078 * 120.88216 * 0.02710 * 9 7 3 29 29 H 1.09000 * 109.47017 * 293.27048 * 1 2 3 30 30 H 1.09003 * 109.47515 * 53.26854 * 1 2 3 31 31 H 1.08999 * 109.47321 * 173.27020 * 1 2 3 32 32 H 1.09004 * 109.46783 * 240.00212 * 2 1 3 33 33 H 1.08990 * 109.46986 * 119.99960 * 2 1 3 34 34 H 1.09001 * 109.46469 * 60.46237 * 6 5 3 35 35 H 1.08997 * 109.47333 * 180.46610 * 6 5 3 36 36 H 1.08996 * 109.46934 * 300.46626 * 6 5 3 37 37 H 1.08997 * 109.63291 * 9.12902 * 10 9 7 38 38 H 1.09001 * 109.62744 * 248.54718 * 10 9 7 39 39 H 1.09004 * 109.49114 * 173.78554 * 11 10 9 40 40 H 1.08994 * 109.49264 * 293.86390 * 11 10 9 41 41 H 1.08999 * 111.00266 * 271.94097 * 15 13 12 42 42 H 1.09005 * 111.00130 * 35.79048 * 15 13 12 43 43 H 1.08999 * 110.36663 * 204.14992 * 16 15 13 44 44 H 1.08998 * 110.46172 * 81.87934 * 16 15 13 45 45 H 0.96995 * 119.99837 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.88171 * 239.51580 * 26 17 16 47 47 H 1.09004 * 109.87936 * 118.35803 * 26 17 16 48 48 H 1.09000 * 109.49156 * 183.07048 * 27 12 11 49 49 H 1.09002 * 109.49280 * 303.14424 * 27 12 11 50 50 H 1.09006 * 109.62711 * 111.45297 * 28 9 7 51 51 H 1.08995 * 109.63252 * 350.87428 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 0.0178 5 16 1.4596 2.2890 -1.4958 6 6 2.4544 1.5274 -2.8077 7 6 1.5176 2.1601 1.2179 8 8 0.5054 2.8238 1.1431 9 7 2.1754 2.0640 2.3903 10 6 1.6826 2.7557 3.5911 11 6 1.6040 1.7429 4.7385 12 7 2.9064 1.0812 4.8933 13 6 2.9249 0.2290 6.0897 14 1 2.1212 -0.5064 6.0502 15 6 4.3031 -0.4661 6.2473 16 6 4.3586 -0.7034 7.7771 17 7 3.7225 0.4884 8.3673 18 6 3.9368 0.9629 9.6337 19 1 3.7783 2.0086 9.8527 20 6 4.3579 0.1000 10.6362 21 7 4.9996 0.5719 11.6841 22 14 4.0137 -1.7307 10.4981 23 1 5.1214 -2.3883 9.7592 24 1 3.9082 -2.3185 11.8577 25 1 2.7381 -1.9409 9.7676 26 6 2.8204 1.0836 7.3704 27 6 3.2587 0.3111 3.6930 28 6 3.4049 1.2647 2.5029 29 1 -0.3633 0.4060 0.9441 30 1 -0.3634 0.6146 -0.8236 31 1 -0.3634 -1.0206 -0.1204 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.2567 0.4559 -2.8378 35 1 2.1920 1.9725 -3.7675 36 1 3.5122 1.6963 -2.6060 37 1 0.6918 3.1663 3.3966 38 1 2.3690 3.5592 3.8584 39 1 1.3466 2.2599 5.6630 40 1 0.8415 0.9973 4.5138 41 1 4.3286 -1.4108 5.7042 42 1 5.1110 0.1905 5.9242 43 1 5.3929 -0.7858 8.1109 44 1 3.8020 -1.6018 8.0438 45 1 5.2941 -0.0312 12.3844 46 1 3.1264 2.1081 7.1585 47 1 1.7960 1.0700 7.7426 48 1 4.2013 -0.2105 3.8592 49 1 2.4732 -0.4147 3.4828 50 1 4.2571 1.9247 2.6654 51 1 3.5527 0.6896 1.5889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046023285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:17 Heat of formation + Delta-G solvation = 11.029790 kcal Electronic energy + Delta-G solvation = -28864.820792 eV Core-core repulsion = 25119.663781 eV Total energy + Delta-G solvation = -3745.157011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.66834 -38.89852 -36.94693 -35.21662 -34.32055 -32.19649 -31.54290 -29.74217 -29.34535 -28.90072 -27.84418 -26.30279 -24.21767 -23.56561 -22.86150 -21.55777 -20.68496 -19.83330 -19.17977 -17.71006 -17.07349 -16.91130 -16.02677 -15.88153 -15.55444 -15.37698 -15.20723 -14.94747 -14.65433 -14.43519 -13.98617 -13.91916 -13.71292 -13.62848 -13.56643 -13.07760 -12.79025 -12.66612 -12.40566 -12.33242 -12.17114 -11.92508 -11.77410 -11.74793 -11.63280 -11.49713 -11.39339 -11.10727 -10.95507 -10.70986 -10.42699 -10.21930 -10.19507 -10.09682 -9.99447 -9.52728 -9.00731 -8.61375 -8.32567 -7.98844 -6.97821 -5.98297 -3.30289 1.05446 2.08430 2.35420 2.67909 3.33187 3.46187 3.50071 3.73410 3.96707 4.27911 4.35932 4.53783 4.60176 4.67294 4.69644 4.71691 4.78872 4.86083 4.95224 4.99756 5.03659 5.10455 5.16947 5.22749 5.28769 5.32657 5.40207 5.43148 5.49360 5.54663 5.56543 5.59327 5.69354 5.70397 5.84298 5.88441 6.05116 6.10133 6.18341 6.19298 6.46696 6.52618 6.60872 6.75308 7.01454 7.03233 7.21467 7.78199 7.83194 8.31183 8.83922 9.67396 10.19644 11.17951 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.029119 B = 0.002290 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.350153 B =12221.778002 C =12507.291694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.111 4.111 3 C -0.094 4.094 4 H 0.107 0.893 5 S -0.183 6.183 6 C -0.141 4.141 7 C 0.539 3.461 8 O -0.521 6.521 9 N -0.607 5.607 10 C 0.119 3.881 11 C 0.041 3.959 12 N -0.524 5.524 13 C 0.070 3.930 14 H 0.047 0.953 15 C -0.123 4.123 16 C 0.118 3.882 17 N -0.605 5.605 18 C -0.242 4.242 19 H 0.089 0.911 20 C 0.027 3.973 21 N -0.904 5.904 22 Si 0.878 3.122 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.276 1.276 26 C 0.144 3.856 27 C 0.040 3.960 28 C 0.108 3.892 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.020 0.980 45 H 0.263 0.737 46 H 0.045 0.955 47 H 0.026 0.974 48 H 0.093 0.907 49 H 0.036 0.964 50 H 0.082 0.918 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.027 -1.935 -28.722 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.150 4.150 3 C -0.226 4.226 4 H 0.125 0.875 5 S 0.043 5.957 6 C -0.310 4.310 7 C 0.325 3.675 8 O -0.396 6.396 9 N -0.342 5.342 10 C -0.003 4.003 11 C -0.088 4.088 12 N -0.249 5.249 13 C -0.038 4.038 14 H 0.064 0.936 15 C -0.162 4.162 16 C -0.008 4.008 17 N -0.333 5.333 18 C -0.370 4.370 19 H 0.106 0.894 20 C -0.172 4.172 21 N -0.547 5.547 22 Si 0.708 3.292 23 H -0.213 1.213 24 H -0.228 1.228 25 H -0.202 1.202 26 C 0.018 3.982 27 C -0.089 4.089 28 C -0.015 4.015 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.111 0.889 49 H 0.054 0.946 50 H 0.101 0.899 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.908 -0.383 -28.557 28.978 hybrid contribution 0.336 -2.866 0.170 2.890 sum -4.572 -3.248 -28.387 28.936 Atomic orbital electron populations 1.21913 0.93860 1.02052 1.03790 1.21669 0.98394 0.91936 1.03018 1.23530 1.04014 0.99535 0.95539 0.87484 1.87376 1.54641 1.53986 0.99684 1.23558 1.02567 1.04125 1.00720 1.19554 0.83817 0.80835 0.83284 1.90732 1.24192 1.40644 1.84065 1.48092 1.26478 1.50146 1.09435 1.21779 1.01382 0.94661 0.82492 1.22501 0.90017 0.97054 0.99230 1.61986 1.29397 1.31446 1.02097 1.22706 0.97447 0.93778 0.89855 0.93550 1.22833 0.96563 0.99085 0.97670 1.21855 0.97685 0.90732 0.90495 1.44672 1.46863 1.30014 1.11713 1.18583 1.41722 0.94144 0.82505 0.89393 1.25169 0.99019 0.97618 0.95434 1.69864 1.38072 1.35265 1.11452 0.86921 0.78991 0.87539 0.75724 1.21263 1.22847 1.20213 1.21342 0.93535 0.96228 0.87064 1.22458 1.01802 0.94659 0.89977 1.21968 0.87037 0.94085 0.98389 0.92543 0.90327 0.92453 0.90725 0.90732 0.90390 0.87753 0.90505 0.88628 0.90229 0.88697 0.94578 0.92123 0.90066 0.92362 0.96224 0.92678 0.93654 0.95605 0.88901 0.94622 0.89943 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.30 37.16 0.35 -1.03 16 2 C -0.11 -0.77 5.48 -26.73 -0.15 -0.92 16 3 C -0.09 -0.79 2.04 -27.88 -0.06 -0.84 16 4 H 0.11 0.69 6.56 -51.92 -0.34 0.34 16 5 S -0.18 -1.70 19.53 -107.50 -2.10 -3.80 16 6 C -0.14 -0.73 10.63 101.05 1.07 0.34 16 7 C 0.54 6.10 5.82 -10.99 -0.06 6.03 16 8 O -0.52 -7.73 15.14 5.56 0.08 -7.65 16 9 N -0.61 -6.23 3.01 -172.49 -0.52 -6.75 16 10 C 0.12 1.31 6.60 -3.60 -0.02 1.29 16 11 C 0.04 0.48 5.51 -3.70 -0.02 0.46 16 12 N -0.52 -6.57 4.45 -224.17 -1.00 -7.56 16 13 C 0.07 1.08 2.65 -65.87 -0.17 0.91 16 14 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 15 C -0.12 -1.93 5.14 -24.58 -0.13 -2.06 16 16 C 0.12 2.49 4.83 -2.53 -0.01 2.48 16 17 N -0.61 -14.52 3.10 -170.07 -0.53 -15.04 16 18 C -0.24 -6.85 10.51 -15.06 -0.16 -7.01 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.03 0.78 5.42 -17.43 -0.09 0.69 16 21 N -0.90 -27.72 13.97 55.49 0.78 -26.95 16 22 Si 0.88 22.40 24.49 -169.99 -4.16 18.24 16 23 H -0.29 -7.00 6.97 56.52 0.39 -6.61 16 24 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 25 H -0.28 -6.99 6.86 56.52 0.39 -6.60 16 26 C 0.14 2.80 5.81 -3.06 -0.02 2.78 16 27 C 0.04 0.39 5.42 -3.72 -0.02 0.37 16 28 C 0.11 0.88 6.24 -3.62 -0.02 0.86 16 29 H 0.06 0.61 7.22 -51.93 -0.37 0.23 16 30 H 0.08 0.75 6.72 -51.93 -0.35 0.40 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.40 7.34 -51.93 -0.38 0.02 16 33 H 0.07 0.49 7.42 -51.93 -0.39 0.10 16 34 H 0.08 0.33 7.43 -51.92 -0.39 -0.06 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 1.12 7.06 -51.93 -0.37 0.75 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.15 7.13 -51.93 -0.37 0.78 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 42 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 43 H 0.06 1.31 7.61 -51.93 -0.40 0.91 16 44 H 0.02 0.44 5.53 -51.93 -0.29 0.15 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.05 0.90 7.98 -51.93 -0.41 0.48 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 0.84 6.62 -51.93 -0.34 0.50 16 49 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.08 0.48 5.01 -51.93 -0.26 0.22 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -33.37 391.37 -9.94 -43.31 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -8.87 Total: -4.03 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 0.48 Total: 4.34 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -1.27 Total: -56.31 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.08 Total: -7.65 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.16 Total: 18.24 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.10 Total: -3.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.37 -9.94 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046023285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.336 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds