Wall clock time and date at job start Wed Apr 1 2020 01:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46825 * 2 1 4 4 H 1.09008 * 109.47115 * 179.00973 * 3 2 1 5 5 S 1.81401 * 109.47143 * 299.00303 * 3 2 1 6 6 C 1.81402 * 103.00423 * 288.27434 * 5 3 2 7 7 C 1.50699 * 109.47688 * 59.00778 * 3 2 1 8 8 O 1.21276 * 120.00035 * 265.00234 * 7 3 2 9 9 N 1.34775 * 119.99827 * 84.99310 * 7 3 2 10 10 C 1.47078 * 120.87674 * 180.02562 * 9 7 3 11 11 C 1.53243 * 108.51777 * 128.84128 * 10 9 7 12 12 N 1.46898 * 109.34109 * 53.83059 * 11 10 9 13 13 C 1.46903 * 110.99744 * 172.74771 * 12 11 10 14 14 H 1.09001 * 110.64463 * 56.68523 * 13 12 11 15 15 C 1.55164 * 110.71814 * 180.02562 * 13 12 11 16 16 C 1.54905 * 101.57997 * 153.86362 * 15 13 12 17 17 N 1.47426 * 104.83560 * 322.98709 * 16 15 13 18 18 C 1.36931 * 125.65236 * 204.16290 * 17 16 15 19 19 H 1.07999 * 120.00359 * 154.61237 * 18 17 16 20 20 C 1.38815 * 120.00114 * 334.61743 * 18 17 16 21 21 N 1.31620 * 119.99984 * 156.31732 * 20 18 17 22 22 Si 1.86795 * 119.99758 * 336.31734 * 20 18 17 23 23 H 1.48502 * 109.47393 * 88.28119 * 22 20 18 24 24 H 1.48500 * 109.47117 * 208.28119 * 22 20 18 25 25 H 1.48500 * 109.47299 * 328.28061 * 22 20 18 26 26 C 1.47026 * 108.69825 * 24.13058 * 17 16 15 27 27 C 1.46902 * 111.26606 * 296.89243 * 12 11 10 28 28 C 1.47078 * 120.88216 * 0.02710 * 9 7 3 29 29 H 1.09000 * 109.47017 * 293.27048 * 1 2 3 30 30 H 1.09003 * 109.47515 * 53.26854 * 1 2 3 31 31 H 1.08999 * 109.47321 * 173.27020 * 1 2 3 32 32 H 1.09004 * 109.46783 * 240.00212 * 2 1 3 33 33 H 1.08990 * 109.46986 * 119.99960 * 2 1 3 34 34 H 1.09001 * 109.46469 * 60.46237 * 6 5 3 35 35 H 1.08997 * 109.47333 * 180.46610 * 6 5 3 36 36 H 1.08996 * 109.46934 * 300.46626 * 6 5 3 37 37 H 1.08997 * 109.63291 * 9.12902 * 10 9 7 38 38 H 1.09001 * 109.62744 * 248.54718 * 10 9 7 39 39 H 1.09004 * 109.49114 * 173.78554 * 11 10 9 40 40 H 1.08994 * 109.49264 * 293.86390 * 11 10 9 41 41 H 1.08999 * 111.00266 * 271.94097 * 15 13 12 42 42 H 1.09005 * 111.00130 * 35.79048 * 15 13 12 43 43 H 1.08999 * 110.36663 * 204.14992 * 16 15 13 44 44 H 1.08998 * 110.46172 * 81.87934 * 16 15 13 45 45 H 0.96995 * 119.99837 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.88171 * 239.51580 * 26 17 16 47 47 H 1.09004 * 109.87936 * 118.35803 * 26 17 16 48 48 H 1.09000 * 109.49156 * 183.07048 * 27 12 11 49 49 H 1.09002 * 109.49280 * 303.14424 * 27 12 11 50 50 H 1.09006 * 109.62711 * 111.45297 * 28 9 7 51 51 H 1.08995 * 109.63252 * 350.87428 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 0.0178 5 16 1.4596 2.2890 -1.4958 6 6 2.4544 1.5274 -2.8077 7 6 1.5176 2.1601 1.2179 8 8 0.5054 2.8238 1.1431 9 7 2.1754 2.0640 2.3903 10 6 1.6826 2.7557 3.5911 11 6 1.6040 1.7429 4.7385 12 7 2.9064 1.0812 4.8933 13 6 2.9249 0.2290 6.0897 14 1 2.1212 -0.5064 6.0502 15 6 4.3031 -0.4661 6.2473 16 6 4.3586 -0.7034 7.7771 17 7 3.7225 0.4884 8.3673 18 6 3.9368 0.9629 9.6337 19 1 3.7783 2.0086 9.8527 20 6 4.3579 0.1000 10.6362 21 7 4.9996 0.5719 11.6841 22 14 4.0137 -1.7307 10.4981 23 1 5.1214 -2.3883 9.7592 24 1 3.9082 -2.3185 11.8577 25 1 2.7381 -1.9409 9.7676 26 6 2.8204 1.0836 7.3704 27 6 3.2587 0.3111 3.6930 28 6 3.4049 1.2647 2.5029 29 1 -0.3633 0.4060 0.9441 30 1 -0.3634 0.6146 -0.8236 31 1 -0.3634 -1.0206 -0.1204 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.2567 0.4559 -2.8378 35 1 2.1920 1.9725 -3.7675 36 1 3.5122 1.6963 -2.6060 37 1 0.6918 3.1663 3.3966 38 1 2.3690 3.5592 3.8584 39 1 1.3466 2.2599 5.6630 40 1 0.8415 0.9973 4.5138 41 1 4.3286 -1.4108 5.7042 42 1 5.1110 0.1905 5.9242 43 1 5.3929 -0.7858 8.1109 44 1 3.8020 -1.6018 8.0438 45 1 5.2941 -0.0312 12.3844 46 1 3.1264 2.1081 7.1585 47 1 1.7960 1.0700 7.7426 48 1 4.2013 -0.2105 3.8592 49 1 2.4732 -0.4147 3.4828 50 1 4.2571 1.9247 2.6654 51 1 3.5527 0.6896 1.5889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046023285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:15 Heat of formation + Delta-G solvation = -11.909786 kcal Electronic energy + Delta-G solvation = -28865.815526 eV Core-core repulsion = 25119.663781 eV Total energy + Delta-G solvation = -3746.151746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.52382 -40.08148 -38.21362 -35.97203 -35.46228 -34.09439 -32.43171 -31.30538 -30.06955 -29.71969 -28.83717 -27.50388 -25.67017 -24.72288 -23.59143 -22.39778 -22.27838 -21.15885 -20.02721 -18.96374 -18.45218 -17.82402 -17.21443 -17.14053 -16.67948 -16.34792 -16.02050 -15.82174 -15.70459 -15.44397 -15.32871 -14.99672 -14.71184 -14.53271 -14.38919 -14.04919 -14.00707 -13.83568 -13.60923 -13.44273 -13.10429 -13.05412 -12.81269 -12.78325 -12.65839 -12.59514 -12.35717 -12.28160 -12.15895 -12.07588 -11.96755 -11.74165 -11.60501 -11.49264 -10.87067 -10.75752 -10.73255 -9.88124 -9.29230 -8.97647 -8.64860 -8.21189 -5.49875 0.46220 1.29640 1.38397 1.46793 1.48430 1.67578 1.89997 2.40673 2.70932 3.02199 3.28369 3.45256 3.60036 3.69479 3.78302 3.88085 3.89827 4.01672 4.17474 4.18959 4.23952 4.28326 4.37190 4.39261 4.40597 4.41939 4.48284 4.49577 4.58393 4.70133 4.75497 4.82320 4.86229 4.87557 4.91973 4.95032 4.99342 5.02713 5.06545 5.07648 5.10633 5.28342 5.35658 5.39646 5.73556 5.99338 6.07660 6.10991 6.30367 6.77989 7.01775 7.52782 8.12380 8.99205 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.029119 B = 0.002290 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.350153 B =12221.778002 C =12507.291694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.079 4.079 4 H 0.134 0.866 5 S -0.259 6.259 6 C -0.122 4.122 7 C 0.534 3.466 8 O -0.565 6.565 9 N -0.606 5.606 10 C 0.124 3.876 11 C 0.048 3.952 12 N -0.530 5.530 13 C 0.088 3.912 14 H 0.053 0.947 15 C -0.104 4.104 16 C 0.107 3.893 17 N -0.625 5.625 18 C -0.239 4.239 19 H 0.050 0.950 20 C -0.031 4.031 21 N -0.952 5.952 22 Si 0.946 3.054 23 H -0.266 1.266 24 H -0.306 1.306 25 H -0.271 1.271 26 C 0.141 3.859 27 C 0.038 3.962 28 C 0.109 3.891 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.035 0.965 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.041 0.959 44 H 0.019 0.981 45 H 0.264 0.736 46 H 0.037 0.963 47 H 0.018 0.982 48 H 0.110 0.890 49 H 0.042 0.958 50 H 0.087 0.913 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -4.851 -32.160 32.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.145 4.145 3 C -0.210 4.210 4 H 0.152 0.848 5 S -0.033 6.033 6 C -0.290 4.290 7 C 0.321 3.679 8 O -0.444 6.444 9 N -0.340 5.340 10 C 0.001 3.999 11 C -0.081 4.081 12 N -0.255 5.255 13 C -0.021 4.021 14 H 0.071 0.929 15 C -0.143 4.143 16 C -0.018 4.018 17 N -0.352 5.352 18 C -0.368 4.368 19 H 0.068 0.932 20 C -0.226 4.226 21 N -0.597 5.597 22 Si 0.774 3.226 23 H -0.192 1.192 24 H -0.234 1.234 25 H -0.196 1.196 26 C 0.016 3.984 27 C -0.090 4.090 28 C -0.013 4.013 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.059 0.941 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.036 0.964 48 H 0.128 0.872 49 H 0.060 0.940 50 H 0.105 0.895 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.724 -3.320 -32.047 32.433 hybrid contribution -0.052 -1.822 1.189 2.176 sum -3.776 -5.142 -30.858 31.511 Atomic orbital electron populations 1.21865 0.95586 1.02302 1.01652 1.21710 0.96800 0.91141 1.04873 1.23485 1.05159 0.99394 0.92999 0.84823 1.87699 1.56902 1.55958 1.02700 1.23586 1.02239 1.04524 0.98666 1.20140 0.83210 0.80329 0.84223 1.90713 1.26242 1.42620 1.84826 1.48187 1.27003 1.49970 1.08821 1.21603 1.00859 0.94565 0.82850 1.22401 0.89805 0.96973 0.98940 1.61918 1.29597 1.31538 1.02457 1.22418 0.97667 0.93072 0.88966 0.92869 1.22756 0.96584 1.01252 0.93677 1.22015 0.96209 0.89305 0.94233 1.44796 1.48478 1.31044 1.10932 1.18488 1.40574 0.92856 0.84873 0.93179 1.25803 0.99289 1.02195 0.95345 1.69989 1.40072 1.36922 1.12766 0.85843 0.79368 0.81895 0.75526 1.19204 1.23385 1.19622 1.21430 0.92122 0.96549 0.88323 1.22608 1.02706 0.94853 0.88803 1.22167 0.85909 0.93976 0.99272 0.95364 0.91663 0.91079 0.88104 0.89402 0.88820 0.87113 0.89067 0.89913 0.90302 0.89869 0.94721 0.87939 0.89519 0.94104 0.96312 0.92731 0.94499 0.96373 0.87192 0.93953 0.89455 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.30 71.98 0.67 -1.79 16 2 C -0.11 -1.09 5.48 30.59 0.17 -0.92 16 3 C -0.08 -1.09 2.04 29.85 0.06 -1.03 16 4 H 0.13 1.09 6.56 -2.39 -0.02 1.07 16 5 S -0.26 -4.44 19.53 -56.49 -1.10 -5.54 16 6 C -0.12 -0.87 10.63 113.37 1.21 0.34 16 7 C 0.53 11.34 5.82 87.66 0.51 11.85 16 8 O -0.57 -17.08 15.14 -3.02 -0.05 -17.12 16 9 N -0.61 -11.19 3.01 -818.02 -2.46 -13.65 16 10 C 0.12 2.66 6.60 86.35 0.57 3.23 16 11 C 0.05 1.06 5.51 86.38 0.48 1.54 16 12 N -0.53 -11.82 4.45 -863.14 -3.84 -15.67 16 13 C 0.09 2.45 2.65 46.10 0.12 2.57 16 14 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 15 C -0.10 -2.87 5.14 31.99 0.16 -2.70 16 16 C 0.11 4.30 4.83 86.85 0.42 4.72 16 17 N -0.63 -29.95 3.10 -691.99 -2.14 -32.10 16 18 C -0.24 -13.95 10.51 84.04 0.88 -13.07 16 19 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 20 C -0.03 -1.83 5.42 84.86 0.46 -1.37 16 21 N -0.95 -60.26 13.97 21.65 0.30 -59.96 16 22 Si 0.95 46.57 24.49 68.60 1.68 48.25 16 23 H -0.27 -12.17 6.97 99.48 0.69 -11.48 16 24 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16 25 H -0.27 -12.95 6.86 99.48 0.68 -12.26 16 26 C 0.14 5.43 5.81 86.73 0.50 5.93 16 27 C 0.04 0.57 5.42 86.37 0.47 1.04 16 28 C 0.11 1.31 6.24 86.34 0.54 1.85 16 29 H 0.03 0.59 7.22 -2.39 -0.02 0.57 16 30 H 0.06 1.20 6.72 -2.39 -0.02 1.19 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 0.57 7.34 -2.38 -0.02 0.55 16 33 H 0.09 0.71 7.42 -2.39 -0.02 0.70 16 34 H 0.09 0.39 7.43 -2.39 -0.02 0.37 16 35 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.08 2.00 7.06 -2.39 -0.02 1.98 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 2.03 7.13 -2.39 -0.02 2.02 16 40 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 2.05 7.95 -2.39 -0.02 2.03 16 42 H 0.09 2.33 8.12 -2.38 -0.02 2.31 16 43 H 0.04 1.77 7.61 -2.39 -0.02 1.75 16 44 H 0.02 0.78 5.53 -2.39 -0.01 0.77 16 45 H 0.26 15.77 8.31 -92.71 -0.77 14.99 16 46 H 0.04 1.47 7.98 -2.39 -0.02 1.46 16 47 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 48 H 0.11 1.32 6.62 -2.39 -0.02 1.31 16 49 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 51 H 0.12 0.67 5.01 -2.39 -0.01 0.66 16 Total: -1.00 -77.25 391.37 0.47 -76.79 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.86 Total: 6.82 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 7.22 Total: 12.19 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -8.14 Total: -121.37 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.05 Total: -17.12 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.68 Total: 48.25 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -1.10 Total: -5.54 kcal Total: -77.25 0.47 -76.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046023285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.877 kcal (2) G-P(sol) polarization free energy of solvation -77.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds