Wall clock time and date at job start Wed Apr 1 2020 01:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47424 * 2 1 4 4 H 1.09003 * 109.47276 * 305.94957 * 3 2 1 5 5 S 1.81409 * 109.46964 * 65.94571 * 3 2 1 6 6 C 1.81402 * 102.99915 * 186.58839 * 5 3 2 7 7 C 1.50703 * 109.47608 * 185.94463 * 3 2 1 8 8 O 1.21278 * 120.00153 * 265.00151 * 7 3 2 9 9 N 1.34773 * 119.99700 * 85.00405 * 7 3 2 10 10 C 1.47074 * 120.87993 * 180.02562 * 9 7 3 11 11 C 1.53244 * 108.51990 * 231.20210 * 10 9 7 12 12 N 1.46901 * 109.33983 * 306.16704 * 11 10 9 13 13 C 1.46901 * 110.99799 * 187.25016 * 12 11 10 14 14 H 1.09000 * 110.88621 * 303.88248 * 13 12 11 15 15 C 1.55157 * 111.00069 * 180.02562 * 13 12 11 16 16 C 1.54319 * 102.94025 * 206.42571 * 15 13 12 17 17 N 1.47022 * 107.27418 * 22.19468 * 16 15 13 18 18 C 1.36939 * 125.65145 * 181.02229 * 17 16 15 19 19 H 1.07992 * 119.99872 * 186.00057 * 18 17 16 20 20 C 1.38815 * 119.99467 * 5.99885 * 18 17 16 21 21 N 1.31613 * 120.00403 * 7.47510 * 20 18 17 22 22 Si 1.86803 * 119.99494 * 187.47509 * 20 18 17 23 23 H 1.48496 * 109.47472 * 84.98979 * 22 20 18 24 24 H 1.48503 * 109.46964 * 324.99068 * 22 20 18 25 25 H 1.48499 * 109.47101 * 204.99113 * 22 20 18 26 26 C 1.47427 * 108.70083 * 1.28803 * 17 16 15 27 27 C 1.46903 * 111.26430 * 63.10717 * 12 11 10 28 28 C 1.47079 * 120.88175 * 0.02562 * 9 7 3 29 29 H 1.09005 * 109.47152 * 304.09614 * 1 2 3 30 30 H 1.08998 * 109.47347 * 64.10303 * 1 2 3 31 31 H 1.09007 * 109.46970 * 184.09810 * 1 2 3 32 32 H 1.09005 * 109.47508 * 240.00044 * 2 1 3 33 33 H 1.09005 * 109.47790 * 120.00120 * 2 1 3 34 34 H 1.09004 * 109.46613 * 184.72357 * 6 5 3 35 35 H 1.08997 * 109.46981 * 304.71925 * 6 5 3 36 36 H 1.08995 * 109.46986 * 64.72443 * 6 5 3 37 37 H 1.09000 * 109.63120 * 111.49806 * 10 9 7 38 38 H 1.08996 * 109.79237 * 351.00630 * 10 9 7 39 39 H 1.09001 * 109.49048 * 186.21076 * 11 10 9 40 40 H 1.09002 * 109.51498 * 66.14185 * 11 10 9 41 41 H 1.09003 * 110.71904 * 88.06398 * 15 13 12 42 42 H 1.08997 * 110.87403 * 324.85953 * 15 13 12 43 43 H 1.09000 * 109.88333 * 262.77604 * 16 15 13 44 44 H 1.09007 * 109.88295 * 141.61298 * 16 15 13 45 45 H 0.97004 * 119.99782 * 180.02562 * 21 20 18 46 46 H 1.09001 * 110.36781 * 94.47899 * 26 17 16 47 47 H 1.09000 * 110.36454 * 216.80451 * 26 17 16 48 48 H 1.08994 * 109.49492 * 56.85389 * 27 12 11 49 49 H 1.09004 * 109.48882 * 176.93690 * 27 12 11 50 50 H 1.09002 * 109.63204 * 248.50364 * 28 9 7 51 51 H 1.09001 * 109.63159 * 9.08770 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5923 1.9862 -0.8319 5 16 1.5843 2.2449 1.5618 6 6 2.0840 3.9684 1.2961 7 6 3.5398 1.4450 -0.1471 8 8 4.2456 1.5014 0.8375 9 7 4.0967 1.3848 -1.3730 10 6 5.5580 1.3855 -1.5391 11 6 5.9317 2.4690 -2.5563 12 7 5.1662 2.2603 -3.7926 13 6 5.6188 3.1717 -4.8522 14 1 5.5569 4.2095 -4.5247 15 6 4.8098 2.9517 -6.1578 16 6 5.7913 3.4156 -7.2547 17 7 7.1467 3.3328 -6.6912 18 6 8.3029 3.6762 -7.3395 19 1 9.2592 3.4884 -6.8740 20 6 8.2458 4.2657 -8.5949 21 7 7.0857 4.6291 -9.0992 22 14 9.8156 4.5433 -9.5686 23 1 10.1567 3.3089 -10.3204 24 1 10.9231 4.8777 -8.6375 25 1 9.6151 5.6640 -10.5220 26 6 7.0554 2.8127 -5.3147 27 6 3.7233 2.4029 -3.5564 28 6 3.2592 1.3165 -2.5801 29 1 -0.3634 0.5761 0.8510 30 1 -0.3634 0.4488 -0.9244 31 1 -0.3633 -1.0251 0.0734 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.9316 4.5365 2.2138 35 1 3.1375 4.0025 1.0184 36 1 1.4832 4.4017 0.4965 37 1 5.8856 0.4121 -1.9040 38 1 6.0379 1.5989 -0.5840 39 1 6.9980 2.4106 -2.7746 40 1 5.6978 3.4509 -2.1450 41 1 3.9092 3.5657 -6.1615 42 1 4.5578 1.8991 -6.2859 43 1 5.5702 4.4444 -7.5389 44 1 5.7108 2.7631 -8.1242 45 1 7.0458 5.0407 -9.9767 46 1 7.2001 1.7324 -5.3070 47 1 7.7920 3.2996 -4.6756 48 1 3.5198 3.3855 -3.1309 49 1 3.1881 2.2967 -4.5000 50 1 3.3660 0.3364 -3.0450 51 1 2.2163 1.4861 -2.3123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046023286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:21 Heat of formation + Delta-G solvation = 6.652496 kcal Electronic energy + Delta-G solvation = -28722.532814 eV Core-core repulsion = 24977.185989 eV Total energy + Delta-G solvation = -3745.346825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.56188 -38.68501 -36.71501 -35.24629 -34.18877 -32.04319 -31.49660 -29.51720 -29.25236 -28.62992 -27.53596 -25.96194 -24.23204 -23.63232 -22.64134 -21.48304 -19.97989 -19.85018 -19.24591 -17.83070 -16.96438 -16.76971 -16.00711 -15.82034 -15.48336 -15.14903 -14.93835 -14.61708 -14.56781 -14.34977 -14.17758 -13.90709 -13.72044 -13.36711 -13.03977 -12.94622 -12.68316 -12.46081 -12.36346 -12.33285 -12.15145 -11.88059 -11.75120 -11.56489 -11.43640 -11.40110 -11.21363 -10.91802 -10.82911 -10.32914 -10.19792 -10.12851 -10.07531 -10.00123 -9.90987 -9.70173 -8.96190 -8.64015 -8.23140 -7.89758 -6.84166 -5.71724 -3.08296 1.21079 2.06131 2.36608 2.75414 3.39065 3.43948 3.45488 3.83058 4.01122 4.29994 4.42817 4.50220 4.68458 4.78284 4.84643 4.86944 4.88814 4.89059 5.01005 5.06824 5.20118 5.24745 5.28497 5.42468 5.44662 5.46540 5.51376 5.54585 5.56139 5.64714 5.65233 5.68957 5.80217 5.84002 5.88051 5.91679 6.18549 6.23421 6.43411 6.47486 6.60628 6.69928 7.07616 7.10639 7.31845 7.46301 7.63276 7.79798 7.86072 8.25261 9.19167 9.80404 10.46221 11.37478 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.026043 B = 0.002200 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.872102 B =12724.377069 C =12968.086463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.098 4.098 3 C -0.087 4.087 4 H 0.108 0.892 5 S -0.198 6.198 6 C -0.130 4.130 7 C 0.511 3.489 8 O -0.521 6.521 9 N -0.607 5.607 10 C 0.118 3.882 11 C 0.042 3.958 12 N -0.525 5.525 13 C 0.067 3.933 14 H 0.047 0.953 15 C -0.134 4.134 16 C 0.173 3.827 17 N -0.604 5.604 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.281 1.281 25 H -0.291 1.291 26 C 0.149 3.851 27 C 0.040 3.960 28 C 0.108 3.892 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.029 0.971 45 H 0.252 0.748 46 H 0.031 0.969 47 H 0.033 0.967 48 H 0.033 0.967 49 H 0.094 0.906 50 H 0.082 0.918 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.981 -6.765 17.892 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.136 4.136 3 C -0.219 4.219 4 H 0.126 0.874 5 S 0.029 5.971 6 C -0.299 4.299 7 C 0.296 3.704 8 O -0.396 6.396 9 N -0.341 5.341 10 C -0.005 4.005 11 C -0.087 4.087 12 N -0.250 5.250 13 C -0.041 4.041 14 H 0.065 0.935 15 C -0.172 4.172 16 C 0.048 3.952 17 N -0.331 5.331 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.215 1.215 24 H -0.207 1.207 25 H -0.217 1.217 26 C 0.023 3.977 27 C -0.089 4.089 28 C -0.015 4.015 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.112 0.888 50 H 0.101 0.899 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.926 -7.517 18.981 25.290 hybrid contribution 1.236 1.671 -1.593 2.618 sum -13.690 -5.847 17.388 22.890 Atomic orbital electron populations 1.21856 0.93887 1.02479 1.02924 1.21281 0.97378 0.91168 1.03813 1.23671 0.95598 1.02508 1.00151 0.87432 1.86652 1.79825 1.07278 1.23350 1.23463 1.04757 0.95516 1.06148 1.20478 0.90134 0.76750 0.83084 1.90742 1.62868 1.48987 1.37014 1.48169 1.07637 1.72729 1.05550 1.21770 0.79117 0.99853 0.99736 1.22475 0.99719 0.96715 0.89787 1.61978 1.02450 1.53788 1.06816 1.22951 0.98006 0.92879 0.90275 0.93465 1.22920 0.98210 1.00773 0.95325 1.21209 0.82044 1.00467 0.91527 1.44414 1.03243 1.76094 1.09346 1.19032 0.84486 1.33196 0.98898 0.90494 1.24811 0.97055 1.00482 0.98135 1.69946 1.22562 1.46207 1.18073 0.86139 0.82325 0.77403 0.79911 1.21529 1.20721 1.21727 1.21513 0.91993 0.96894 0.87341 1.22469 0.90340 0.96637 0.99496 1.22017 0.94083 1.00618 0.84770 0.91165 0.92322 0.91969 0.90125 0.90306 0.87859 0.90327 0.90547 0.90414 0.88822 0.88904 0.94776 0.92653 0.91566 0.91996 0.95275 0.93760 0.95169 0.94843 0.94843 0.88820 0.89931 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.81 37.15 0.36 -0.55 16 2 C -0.10 -0.72 5.35 -26.74 -0.14 -0.86 16 3 C -0.09 -0.77 1.79 -27.88 -0.05 -0.82 16 4 H 0.11 0.78 6.22 -51.92 -0.32 0.46 16 5 S -0.20 -1.96 19.89 -107.50 -2.14 -4.10 16 6 C -0.13 -1.11 10.60 101.05 1.07 -0.04 16 7 C 0.51 5.87 6.46 -10.99 -0.07 5.80 16 8 O -0.52 -7.80 15.60 5.56 0.09 -7.72 16 9 N -0.61 -6.40 3.01 -172.45 -0.52 -6.92 16 10 C 0.12 1.33 6.59 -3.60 -0.02 1.31 16 11 C 0.04 0.52 5.52 -3.70 -0.02 0.50 16 12 N -0.53 -7.05 4.53 -223.61 -1.01 -8.06 16 13 C 0.07 1.14 2.73 -65.44 -0.18 0.96 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C -0.13 -2.37 5.03 -24.90 -0.13 -2.49 16 16 C 0.17 4.10 5.45 -3.07 -0.02 4.09 16 17 N -0.60 -15.30 3.39 -169.93 -0.58 -15.88 16 18 C -0.23 -6.32 10.26 -15.06 -0.15 -6.48 16 19 H 0.08 2.07 7.84 -52.49 -0.41 1.65 16 20 C -0.01 -0.24 5.45 -17.43 -0.09 -0.33 16 21 N -0.92 -26.84 10.46 55.49 0.58 -26.26 16 22 Si 0.91 22.00 29.56 -169.99 -5.02 16.98 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.15 3.03 5.96 -2.41 -0.01 3.02 16 27 C 0.04 0.43 5.43 -3.69 -0.02 0.41 16 28 C 0.11 0.94 6.22 -3.59 -0.02 0.91 16 29 H 0.07 0.47 7.05 -51.93 -0.37 0.10 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.08 0.52 7.88 -51.93 -0.41 0.12 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.12 7.07 -51.93 -0.37 0.75 16 39 H 0.09 1.18 7.05 -51.93 -0.37 0.82 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.87 7.96 -51.93 -0.41 0.46 16 42 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 43 H 0.06 1.65 6.87 -51.93 -0.36 1.29 16 44 H 0.03 0.76 7.99 -51.93 -0.41 0.34 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.03 0.67 7.87 -51.93 -0.41 0.26 16 48 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.98 6.64 -51.93 -0.34 0.63 16 50 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.09 0.54 5.46 -51.93 -0.28 0.26 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -31.98 400.20 -11.15 -43.14 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -9.08 Total: -2.63 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 0.50 Total: 5.42 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -1.53 Total: -57.12 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.09 Total: -7.72 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.14 Total: -4.10 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.98 -11.15 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046023286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.788 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds