Wall clock time and date at job start Wed Apr 1 2020 01:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47424 * 2 1 4 4 H 1.09003 * 109.47276 * 305.94957 * 3 2 1 5 5 S 1.81409 * 109.46964 * 65.94571 * 3 2 1 6 6 C 1.81402 * 102.99915 * 186.58839 * 5 3 2 7 7 C 1.50703 * 109.47608 * 185.94463 * 3 2 1 8 8 O 1.21278 * 120.00153 * 265.00151 * 7 3 2 9 9 N 1.34773 * 119.99700 * 85.00405 * 7 3 2 10 10 C 1.47074 * 120.87993 * 180.02562 * 9 7 3 11 11 C 1.53244 * 108.51990 * 231.20210 * 10 9 7 12 12 N 1.46901 * 109.33983 * 306.16704 * 11 10 9 13 13 C 1.46901 * 110.99799 * 187.25016 * 12 11 10 14 14 H 1.09000 * 110.88621 * 303.88248 * 13 12 11 15 15 C 1.55157 * 111.00069 * 180.02562 * 13 12 11 16 16 C 1.54319 * 102.94025 * 206.42571 * 15 13 12 17 17 N 1.47022 * 107.27418 * 22.19468 * 16 15 13 18 18 C 1.36939 * 125.65145 * 181.02229 * 17 16 15 19 19 H 1.07992 * 119.99872 * 186.00057 * 18 17 16 20 20 C 1.38815 * 119.99467 * 5.99885 * 18 17 16 21 21 N 1.31613 * 120.00403 * 7.47510 * 20 18 17 22 22 Si 1.86803 * 119.99494 * 187.47509 * 20 18 17 23 23 H 1.48496 * 109.47472 * 84.98979 * 22 20 18 24 24 H 1.48503 * 109.46964 * 324.99068 * 22 20 18 25 25 H 1.48499 * 109.47101 * 204.99113 * 22 20 18 26 26 C 1.47427 * 108.70083 * 1.28803 * 17 16 15 27 27 C 1.46903 * 111.26430 * 63.10717 * 12 11 10 28 28 C 1.47079 * 120.88175 * 0.02562 * 9 7 3 29 29 H 1.09005 * 109.47152 * 304.09614 * 1 2 3 30 30 H 1.08998 * 109.47347 * 64.10303 * 1 2 3 31 31 H 1.09007 * 109.46970 * 184.09810 * 1 2 3 32 32 H 1.09005 * 109.47508 * 240.00044 * 2 1 3 33 33 H 1.09005 * 109.47790 * 120.00120 * 2 1 3 34 34 H 1.09004 * 109.46613 * 184.72357 * 6 5 3 35 35 H 1.08997 * 109.46981 * 304.71925 * 6 5 3 36 36 H 1.08995 * 109.46986 * 64.72443 * 6 5 3 37 37 H 1.09000 * 109.63120 * 111.49806 * 10 9 7 38 38 H 1.08996 * 109.79237 * 351.00630 * 10 9 7 39 39 H 1.09001 * 109.49048 * 186.21076 * 11 10 9 40 40 H 1.09002 * 109.51498 * 66.14185 * 11 10 9 41 41 H 1.09003 * 110.71904 * 88.06398 * 15 13 12 42 42 H 1.08997 * 110.87403 * 324.85953 * 15 13 12 43 43 H 1.09000 * 109.88333 * 262.77604 * 16 15 13 44 44 H 1.09007 * 109.88295 * 141.61298 * 16 15 13 45 45 H 0.97004 * 119.99782 * 180.02562 * 21 20 18 46 46 H 1.09001 * 110.36781 * 94.47899 * 26 17 16 47 47 H 1.09000 * 110.36454 * 216.80451 * 26 17 16 48 48 H 1.08994 * 109.49492 * 56.85389 * 27 12 11 49 49 H 1.09004 * 109.48882 * 176.93690 * 27 12 11 50 50 H 1.09002 * 109.63204 * 248.50364 * 28 9 7 51 51 H 1.09001 * 109.63159 * 9.08770 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5923 1.9862 -0.8319 5 16 1.5843 2.2449 1.5618 6 6 2.0840 3.9684 1.2961 7 6 3.5398 1.4450 -0.1471 8 8 4.2456 1.5014 0.8375 9 7 4.0967 1.3848 -1.3730 10 6 5.5580 1.3855 -1.5391 11 6 5.9317 2.4690 -2.5563 12 7 5.1662 2.2603 -3.7926 13 6 5.6188 3.1717 -4.8522 14 1 5.5569 4.2095 -4.5247 15 6 4.8098 2.9517 -6.1578 16 6 5.7913 3.4156 -7.2547 17 7 7.1467 3.3328 -6.6912 18 6 8.3029 3.6762 -7.3395 19 1 9.2592 3.4884 -6.8740 20 6 8.2458 4.2657 -8.5949 21 7 7.0857 4.6291 -9.0992 22 14 9.8156 4.5433 -9.5686 23 1 10.1567 3.3089 -10.3204 24 1 10.9231 4.8777 -8.6375 25 1 9.6151 5.6640 -10.5220 26 6 7.0554 2.8127 -5.3147 27 6 3.7233 2.4029 -3.5564 28 6 3.2592 1.3165 -2.5801 29 1 -0.3634 0.5761 0.8510 30 1 -0.3634 0.4488 -0.9244 31 1 -0.3633 -1.0251 0.0734 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.9316 4.5365 2.2138 35 1 3.1375 4.0025 1.0184 36 1 1.4832 4.4017 0.4965 37 1 5.8856 0.4121 -1.9040 38 1 6.0379 1.5989 -0.5840 39 1 6.9980 2.4106 -2.7746 40 1 5.6978 3.4509 -2.1450 41 1 3.9092 3.5657 -6.1615 42 1 4.5578 1.8991 -6.2859 43 1 5.5702 4.4444 -7.5389 44 1 5.7108 2.7631 -8.1242 45 1 7.0458 5.0407 -9.9767 46 1 7.2001 1.7324 -5.3070 47 1 7.7920 3.2996 -4.6756 48 1 3.5198 3.3855 -3.1309 49 1 3.1881 2.2967 -4.5000 50 1 3.3660 0.3364 -3.0450 51 1 2.2163 1.4861 -2.3123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046023286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:20 Heat of formation + Delta-G solvation = -13.175588 kcal Electronic energy + Delta-G solvation = -28723.392624 eV Core-core repulsion = 24977.185989 eV Total energy + Delta-G solvation = -3746.206635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.47324 -39.93826 -38.09324 -36.01188 -35.39283 -33.80954 -32.43143 -30.97889 -30.23336 -29.63793 -28.60919 -27.33972 -25.85694 -24.70045 -23.31773 -22.36819 -21.78490 -21.20770 -20.15750 -18.94170 -18.60705 -17.64095 -17.15703 -16.69434 -16.58271 -16.48700 -16.01391 -15.92730 -15.79146 -15.38743 -15.11086 -14.87270 -14.54995 -14.41442 -14.26989 -14.01288 -13.87080 -13.76580 -13.54319 -13.38834 -13.08746 -12.96382 -12.87936 -12.75496 -12.64928 -12.41549 -12.27548 -12.13493 -12.00734 -11.96506 -11.83287 -11.68613 -11.60489 -11.51213 -11.00718 -10.83760 -10.72945 -9.89186 -9.31932 -8.89334 -8.64606 -7.83826 -5.22737 0.51251 1.32382 1.45509 1.47841 1.54568 1.55601 1.94382 2.47080 2.76058 3.25161 3.32017 3.61275 3.68191 3.76779 3.82219 3.92685 3.96275 4.10996 4.19240 4.20873 4.24891 4.25851 4.28958 4.34698 4.38951 4.47256 4.50490 4.61888 4.71353 4.72727 4.78441 4.80747 4.84858 4.89467 4.96722 5.01790 5.07839 5.10385 5.16461 5.19547 5.34365 5.43776 5.44870 5.60513 5.79027 5.98849 6.07234 6.22165 6.29098 6.99771 7.09449 7.77020 8.41212 9.23618 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.026043 B = 0.002200 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.872102 B =12724.377069 C =12968.086463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.077 4.077 4 H 0.131 0.869 5 S -0.232 6.232 6 C -0.123 4.123 7 C 0.510 3.490 8 O -0.562 6.562 9 N -0.605 5.605 10 C 0.124 3.876 11 C 0.047 3.953 12 N -0.524 5.524 13 C 0.088 3.912 14 H 0.037 0.963 15 C -0.113 4.113 16 C 0.178 3.822 17 N -0.627 5.627 18 C -0.243 4.243 19 H 0.080 0.920 20 C -0.065 4.065 21 N -0.948 5.948 22 Si 0.977 3.023 23 H -0.285 1.285 24 H -0.270 1.270 25 H -0.294 1.294 26 C 0.147 3.853 27 C 0.037 3.963 28 C 0.111 3.889 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.027 0.973 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.027 0.973 44 H -0.005 1.005 45 H 0.247 0.753 46 H 0.033 0.967 47 H 0.032 0.968 48 H 0.033 0.967 49 H 0.105 0.895 50 H 0.094 0.906 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.444 -7.586 18.339 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.208 4.208 4 H 0.148 0.852 5 S -0.005 6.005 6 C -0.291 4.291 7 C 0.295 3.705 8 O -0.441 6.441 9 N -0.338 5.338 10 C 0.001 3.999 11 C -0.082 4.082 12 N -0.249 5.249 13 C -0.021 4.021 14 H 0.055 0.945 15 C -0.152 4.152 16 C 0.052 3.948 17 N -0.354 5.354 18 C -0.372 4.372 19 H 0.097 0.903 20 C -0.258 4.258 21 N -0.597 5.597 22 Si 0.805 3.195 23 H -0.212 1.212 24 H -0.195 1.195 25 H -0.220 1.220 26 C 0.022 3.978 27 C -0.092 4.092 28 C -0.011 4.011 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.046 0.954 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.045 0.955 44 H 0.013 0.987 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.123 0.877 50 H 0.113 0.887 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.406 -8.360 19.450 26.784 hybrid contribution 1.715 1.908 -1.685 3.069 sum -14.691 -6.452 17.766 23.939 Atomic orbital electron populations 1.21824 0.92577 1.03031 1.03249 1.21314 0.98407 0.89989 1.03668 1.23708 0.93541 1.03608 0.99972 0.85158 1.86792 1.79656 1.08864 1.25200 1.23467 1.03743 0.94612 1.07328 1.20936 0.91121 0.75749 0.82648 1.90727 1.64055 1.50897 1.38403 1.48253 1.07457 1.72034 1.06091 1.21626 0.79937 0.99570 0.98763 1.22426 0.99360 0.96857 0.89553 1.61934 1.04320 1.52301 1.06336 1.22566 0.95483 0.92985 0.91114 0.94463 1.22725 0.97410 1.01927 0.93115 1.21006 0.83176 0.97869 0.92735 1.44734 1.03190 1.76041 1.11437 1.19409 0.85692 1.32718 0.99418 0.90257 1.25645 1.00115 1.00853 0.99219 1.70163 1.24428 1.47097 1.18007 0.85116 0.79034 0.76968 0.78351 1.21224 1.19474 1.22025 1.21618 0.94517 0.96564 0.85131 1.22616 0.88261 0.97540 1.00758 1.22182 0.95136 1.00406 0.83348 0.92176 0.90828 0.91149 0.88676 0.92043 0.86896 0.92146 0.88783 0.89769 0.89773 0.89557 0.95432 0.90089 0.90013 0.95516 0.98657 0.94357 0.94928 0.94949 0.94867 0.87672 0.88743 0.86656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.81 71.98 0.71 -0.64 16 2 C -0.10 -1.16 5.35 30.59 0.16 -0.99 16 3 C -0.08 -1.16 1.79 29.85 0.05 -1.11 16 4 H 0.13 1.37 6.22 -2.39 -0.01 1.35 16 5 S -0.23 -4.32 19.89 -56.49 -1.12 -5.44 16 6 C -0.12 -1.92 10.60 113.37 1.20 -0.72 16 7 C 0.51 10.82 6.46 87.66 0.57 11.39 16 8 O -0.56 -16.63 15.60 -3.02 -0.05 -16.68 16 9 N -0.61 -11.28 3.01 -817.90 -2.46 -13.74 16 10 C 0.12 2.61 6.59 86.35 0.57 3.18 16 11 C 0.05 1.10 5.52 86.38 0.48 1.57 16 12 N -0.52 -12.80 4.53 -861.37 -3.90 -16.70 16 13 C 0.09 2.83 2.73 46.38 0.13 2.96 16 14 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 15 C -0.11 -3.82 5.03 31.78 0.16 -3.66 16 16 C 0.18 8.58 5.45 86.73 0.47 9.06 16 17 N -0.63 -32.21 3.39 -691.54 -2.35 -34.56 16 18 C -0.24 -13.71 10.26 84.03 0.86 -12.85 16 19 H 0.08 4.29 7.84 -2.91 -0.02 4.27 16 20 C -0.07 -3.71 5.45 84.86 0.46 -3.25 16 21 N -0.95 -56.84 10.46 21.65 0.23 -56.61 16 22 Si 0.98 45.77 29.56 68.60 2.03 47.80 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 C 0.15 5.93 5.96 86.93 0.52 6.44 16 27 C 0.04 0.66 5.43 86.39 0.47 1.13 16 28 C 0.11 1.48 6.22 86.36 0.54 2.01 16 29 H 0.06 0.68 7.05 -2.38 -0.02 0.67 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.09 0.89 7.88 -2.38 -0.02 0.88 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.17 7.93 -2.39 -0.02 1.15 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.97 7.07 -2.39 -0.02 1.95 16 39 H 0.09 2.13 7.05 -2.39 -0.02 2.11 16 40 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 2.34 7.96 -2.39 -0.02 2.32 16 42 H 0.08 2.53 8.10 -2.39 -0.02 2.52 16 43 H 0.03 1.47 6.87 -2.39 -0.02 1.45 16 44 H 0.00 -0.26 7.99 -2.38 -0.02 -0.28 16 45 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 46 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.03 1.30 7.87 -2.39 -0.02 1.28 16 48 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.11 1.71 6.64 -2.39 -0.02 1.70 16 50 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.12 0.88 5.46 -2.39 -0.01 0.86 16 Total: -1.00 -71.87 400.20 0.61 -71.25 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.89 Total: 10.16 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 7.34 Total: 14.53 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -8.48 Total: -121.61 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.05 Total: -16.68 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -1.12 Total: -5.44 kcal Total: -71.87 0.61 -71.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046023286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.079 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds