Wall clock time and date at job start Wed Apr 1 2020 00:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 110.88145 * 2 1 4 4 C 1.34773 * 120.00047 * 303.87799 * 3 2 1 5 5 O 1.21598 * 120.00234 * 0.02562 * 4 3 2 6 6 C 1.47527 * 119.99899 * 180.02562 * 4 3 2 7 7 C 1.39794 * 120.06564 * 359.72246 * 6 4 3 8 8 C 1.37617 * 119.92678 * 179.74407 * 7 6 4 9 9 C 1.39220 * 120.06778 * 0.53582 * 8 7 6 10 10 N 1.39044 * 119.93135 * 179.76345 * 9 8 7 11 11 C 1.48222 * 111.00163 * 119.52293 * 10 9 8 12 12 C 1.51119 * 105.36340 * 144.90173 * 11 10 9 13 13 C 1.30964 * 109.45284 * 343.02206 * 12 11 10 14 14 C 1.48231 * 110.99957 * 233.16223 * 10 9 8 15 15 C 1.39217 * 120.13685 * 359.74292 * 9 8 7 16 16 C 1.37611 * 120.07272 * 359.97438 * 15 9 8 17 17 C 1.55155 * 111.00445 * 123.87989 * 2 1 3 18 18 C 1.54326 * 102.93883 * 153.61353 * 17 2 1 19 19 N 1.47018 * 107.27294 * 337.80797 * 18 17 2 20 20 C 1.36934 * 125.64850 * 178.98126 * 19 18 17 21 21 H 1.08001 * 120.00282 * 174.88668 * 20 19 18 22 22 C 1.38816 * 120.00001 * 354.89631 * 20 19 18 23 23 N 1.31619 * 119.99980 * 5.94013 * 22 20 19 24 24 Si 1.86807 * 119.99789 * 185.95010 * 22 20 19 25 25 H 1.48496 * 109.47184 * 94.98930 * 24 22 20 26 26 H 1.48494 * 109.46729 * 214.98839 * 24 22 20 27 27 H 1.48493 * 109.47077 * 334.98652 * 24 22 20 28 28 C 1.47424 * 108.70427 * 358.94298 * 19 18 17 29 29 H 1.08994 * 109.47324 * 59.29709 * 1 2 3 30 30 H 1.09003 * 109.46581 * 179.30214 * 1 2 3 31 31 H 1.09006 * 109.47025 * 299.29788 * 1 2 3 32 32 H 0.97001 * 119.99652 * 123.88821 * 3 2 1 33 33 H 1.08002 * 120.03750 * 0.02662 * 7 6 4 34 34 H 1.07998 * 119.96525 * 180.27637 * 8 7 6 35 35 H 1.08996 * 110.26792 * 263.87438 * 11 10 9 36 36 H 1.09000 * 110.26502 * 25.92841 * 11 10 9 37 37 H 1.08000 * 125.27203 * 163.04808 * 12 11 10 38 38 H 1.08006 * 125.26739 * 179.97438 * 13 12 11 39 39 H 1.08995 * 110.26912 * 334.06839 * 14 10 9 40 40 H 1.09003 * 110.26538 * 96.13162 * 14 10 9 41 41 H 1.08001 * 119.96515 * 179.97438 * 15 9 8 42 42 H 1.07999 * 120.03530 * 180.02562 * 16 15 9 43 43 H 1.09005 * 110.72219 * 271.97837 * 17 2 1 44 44 H 1.09001 * 110.72225 * 35.25502 * 17 2 1 45 45 H 1.09009 * 109.87940 * 97.22640 * 18 17 2 46 46 H 1.08993 * 109.88511 * 218.38763 * 18 17 2 47 47 H 0.96999 * 119.99871 * 180.02562 * 23 22 20 48 48 H 1.09002 * 110.36618 * 265.29157 * 28 19 18 49 49 H 1.08990 * 110.36918 * 142.96941 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0522 1.3688 0.0000 4 6 1.6845 2.2303 -0.9690 5 8 0.9190 1.8717 -1.8431 6 6 2.2108 3.6085 -0.9693 7 6 3.0865 4.0240 0.0381 8 6 3.5798 5.3087 0.0321 9 6 3.1990 6.1975 -0.9695 10 7 3.6954 7.4963 -0.9700 11 6 4.4631 7.7711 -2.2078 12 6 4.1893 9.2207 -2.5353 13 6 3.1325 9.6248 -1.8756 14 6 2.5940 8.4858 -1.0411 15 6 2.3226 5.7883 -1.9709 16 6 1.8304 4.5033 -1.9737 17 6 2.0862 -0.8074 1.2025 18 6 3.4679 -1.2730 0.6968 19 7 3.4280 -1.2421 -0.7726 20 6 4.4653 -1.5654 -1.6060 21 1 4.3117 -1.5904 -2.6748 22 6 5.7143 -1.8611 -1.0773 23 7 5.8738 -1.9456 0.2265 24 14 7.1687 -2.1389 -2.2162 25 1 7.9263 -0.8710 -2.3699 26 1 8.0572 -3.1796 -1.6395 27 1 6.6788 -2.5870 -3.5444 28 6 2.0861 -0.8064 -1.2000 29 1 -0.3634 0.5247 -0.8836 30 1 -0.3632 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8963 32 1 2.6627 1.6549 0.6974 33 1 3.3790 3.3362 0.8177 34 1 4.2598 5.6290 0.8076 35 1 5.5281 7.6181 -2.0334 36 1 4.1163 7.1291 -3.0175 37 1 4.7742 9.8291 -3.2092 38 1 2.7114 10.6184 -1.9207 39 1 1.7209 8.0452 -1.5223 40 1 2.3379 8.8381 -0.0419 41 1 2.0287 6.4802 -2.7463 42 1 1.1509 4.1864 -2.7510 43 1 2.1916 -0.1693 2.0799 44 1 1.4472 -1.6631 1.4211 45 1 4.2426 -0.5981 1.0609 46 1 3.6660 -2.2880 1.0410 47 1 6.7466 -2.1519 0.5960 48 1 1.4532 -1.6705 -1.4022 49 1 2.1568 -0.1719 -2.0834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046620033.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:27 Heat of formation + Delta-G solvation = 48.432913 kcal Electronic energy + Delta-G solvation = -29683.753814 eV Core-core repulsion = 25804.774772 eV Total energy + Delta-G solvation = -3878.979041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.82784 -41.13934 -39.33721 -38.30181 -35.70480 -34.23290 -33.49314 -32.16583 -31.67552 -30.43528 -29.57000 -29.41797 -27.52839 -25.59143 -25.03817 -23.85516 -22.81680 -22.12076 -21.48313 -20.41651 -20.32801 -19.37034 -18.71499 -18.07105 -17.26607 -16.78554 -16.57470 -16.29072 -16.06942 -15.78875 -15.58917 -15.25381 -14.99872 -14.76798 -14.63045 -14.30981 -14.06017 -13.95987 -13.84576 -13.56600 -13.42725 -13.27903 -13.16988 -13.08885 -12.90355 -12.80291 -12.75748 -12.34308 -12.25365 -12.11317 -12.03835 -11.98855 -11.71919 -11.59619 -10.71942 -10.69211 -10.66183 -10.10110 -10.07339 -9.72165 -9.40894 -8.86823 -7.87593 -5.20335 -0.32978 0.30662 1.22116 1.42787 1.43829 1.52896 1.77936 2.18397 2.47092 2.74717 2.77936 3.30448 3.53489 3.64238 3.68610 3.74537 3.84647 3.87325 3.89209 4.03847 4.18205 4.19213 4.29514 4.45295 4.48013 4.51535 4.52947 4.63889 4.66969 4.69029 4.78267 4.86208 4.91793 4.92556 4.97791 5.01466 5.07796 5.10993 5.26563 5.29729 5.38448 5.39122 5.42406 5.42724 5.59102 5.63927 5.68410 5.77253 5.88035 6.19278 6.22257 6.60030 7.10869 7.24654 7.76203 8.40988 9.22515 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.002950 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.689993 B = 9490.845836 C =10998.901901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.167 3.833 3 N -0.693 5.693 4 C 0.556 3.444 5 O -0.571 6.571 6 C -0.149 4.149 7 C -0.073 4.073 8 C -0.102 4.102 9 C 0.101 3.899 10 N -0.482 5.482 11 C 0.047 3.953 12 C -0.171 4.171 13 C -0.166 4.166 14 C 0.047 3.953 15 C -0.156 4.156 16 C -0.057 4.057 17 C -0.129 4.129 18 C 0.183 3.817 19 N -0.620 5.620 20 C -0.243 4.243 21 H 0.067 0.933 22 C -0.056 4.056 23 N -0.943 5.943 24 Si 0.971 3.029 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.275 1.275 28 C 0.130 3.870 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.406 0.594 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.022 0.978 46 H 0.007 0.993 47 H 0.248 0.752 48 H 0.027 0.973 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 22.716 1.481 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.080 3.920 3 N -0.343 5.343 4 C 0.345 3.655 5 O -0.452 6.452 6 C -0.152 4.152 7 C -0.092 4.092 8 C -0.121 4.121 9 C 0.006 3.994 10 N -0.203 5.203 11 C -0.078 4.078 12 C -0.189 4.189 13 C -0.184 4.184 14 C -0.079 4.079 15 C -0.176 4.176 16 C -0.077 4.077 17 C -0.167 4.167 18 C 0.059 3.941 19 N -0.347 5.347 20 C -0.372 4.372 21 H 0.085 0.915 22 C -0.250 4.250 23 N -0.591 5.591 24 Si 0.799 3.201 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.200 1.200 28 C 0.003 3.997 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.243 0.757 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.176 0.824 38 H 0.179 0.821 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.160 0.840 42 H 0.148 0.852 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.040 0.960 46 H 0.026 0.974 47 H 0.058 0.942 48 H 0.044 0.956 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.339 22.406 1.404 23.949 hybrid contribution 0.937 -0.706 -1.139 1.635 sum -7.401 21.700 0.265 22.929 Atomic orbital electron populations 1.21959 0.91815 1.03184 1.03156 1.21384 0.94253 0.80646 0.95749 1.45727 1.48414 1.11262 1.28946 1.18465 0.80417 0.85586 0.81028 1.90685 1.37556 1.79155 1.37800 1.20047 1.02398 0.93500 0.99247 1.21446 0.94202 0.96536 0.97043 1.21096 1.00200 0.91915 0.98877 1.19292 0.94739 0.91021 0.94350 1.63144 1.19660 1.00463 1.37048 1.22303 1.00074 0.95721 0.89720 1.23722 0.98941 0.95222 1.01001 1.23763 0.97432 0.99611 0.97628 1.22353 0.92872 0.91065 1.01576 1.21662 0.99572 0.96333 0.99990 1.21138 0.97457 0.92504 0.96614 1.23118 0.96892 1.00070 0.96631 1.20975 0.93000 0.97482 0.82673 1.44679 1.08656 1.78678 1.02659 1.19299 0.88889 1.39548 0.89437 0.91483 1.25510 0.99639 1.02354 0.97491 1.70142 1.22570 1.55838 1.10572 0.85176 0.79531 0.77150 0.78206 1.21393 1.21598 1.19985 1.21984 0.86436 0.95056 0.96186 0.91964 0.90615 0.90652 0.75703 0.83898 0.83163 0.89239 0.92091 0.82425 0.82112 0.91455 0.88652 0.84005 0.85194 0.88379 0.88860 0.95988 0.97446 0.94247 0.95560 0.95684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.52 71.98 0.61 -3.58 16 2 C 0.17 5.82 0.82 5.00 0.00 5.82 16 3 N -0.69 -22.83 5.13 -419.77 -2.15 -24.99 16 4 C 0.56 19.30 7.13 86.69 0.62 19.91 16 5 O -0.57 -22.97 13.19 -4.02 -0.05 -23.03 16 6 C -0.15 -4.32 5.88 -20.08 -0.12 -4.44 16 7 C -0.07 -1.78 9.53 22.50 0.21 -1.56 16 8 C -0.10 -2.24 9.95 22.36 0.22 -2.02 16 9 C 0.10 2.16 4.90 38.47 0.19 2.35 16 10 N -0.48 -9.06 5.56 -695.46 -3.87 -12.93 16 11 C 0.05 0.79 6.46 85.43 0.55 1.34 16 12 C -0.17 -2.11 10.95 25.82 0.28 -1.83 16 13 C -0.17 -1.92 10.95 25.81 0.28 -1.63 16 14 C 0.05 0.69 6.43 85.43 0.55 1.24 16 15 C -0.16 -3.37 7.65 22.36 0.17 -3.20 16 16 C -0.06 -1.52 9.58 22.50 0.22 -1.31 16 17 C -0.13 -4.35 5.97 31.78 0.19 -4.16 16 18 C 0.18 8.74 5.37 86.73 0.47 9.21 16 19 N -0.62 -32.67 3.39 -692.01 -2.35 -35.02 16 20 C -0.24 -14.17 10.27 84.04 0.86 -13.30 16 21 H 0.07 3.91 7.84 -2.91 -0.02 3.89 16 22 C -0.06 -3.25 5.48 84.86 0.47 -2.79 16 23 N -0.94 -56.01 10.35 21.65 0.22 -55.79 16 24 Si 0.97 46.81 29.56 68.60 2.03 48.83 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 27 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 28 C 0.13 5.85 6.17 86.85 0.54 6.38 16 29 H 0.06 2.08 6.00 -2.39 -0.01 2.06 16 30 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 31 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.41 11.80 6.53 -92.71 -0.61 11.20 16 33 H 0.14 3.06 6.39 -2.91 -0.02 3.04 16 34 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.08 6.75 -2.39 -0.02 1.06 16 37 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 39 H 0.07 0.99 6.26 -2.39 -0.01 0.97 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.14 2.51 7.01 -2.91 -0.02 2.49 16 42 H 0.13 3.53 7.64 -2.91 -0.02 3.51 16 43 H 0.10 2.69 8.09 -2.38 -0.02 2.67 16 44 H 0.09 2.84 8.04 -2.39 -0.02 2.82 16 45 H 0.02 1.15 7.27 -2.38 -0.02 1.13 16 46 H 0.01 0.39 7.63 -2.39 -0.02 0.38 16 47 H 0.25 14.31 8.31 -92.71 -0.77 13.53 16 48 H 0.03 1.18 8.03 -2.39 -0.02 1.16 16 49 H 0.02 1.24 6.86 -2.39 -0.02 1.22 16 Total: -1.00 -72.30 385.88 0.50 -71.80 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.36 Total: 24.67 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 6.32 Total: 6.45 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -8.15 Total: -128.72 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.03 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -72.30 0.50 -71.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046620033.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.231 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds