Wall clock time and date at job start Wed Apr 1 2020 00:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 110.91371 * 2 1 4 4 C 1.34781 * 120.00261 * 56.09978 * 3 2 1 5 5 O 1.21549 * 119.99649 * 0.02562 * 4 3 2 6 6 C 1.47856 * 120.00105 * 180.02562 * 4 3 2 7 7 C 1.39624 * 120.10947 * 359.72009 * 6 4 3 8 8 C 1.37983 * 120.00292 * 179.76656 * 7 6 4 9 9 C 1.38244 * 120.22741 * 0.51685 * 8 7 6 10 10 C 1.38984 * 120.22356 * 359.74132 * 9 8 7 11 11 N 1.39708 * 120.00728 * 180.02562 * 10 9 8 12 12 C 1.48226 * 111.00148 * 119.81705 * 11 10 9 13 13 C 1.51117 * 105.36352 * 144.90166 * 12 11 10 14 14 C 1.30962 * 109.45128 * 343.01817 * 13 12 11 15 15 C 1.48231 * 110.99793 * 233.45190 * 11 10 9 16 16 C 1.38679 * 119.98801 * 359.97438 * 10 9 8 17 17 C 1.55157 * 111.00012 * 236.09792 * 2 1 3 18 18 C 1.54326 * 102.93788 * 206.42019 * 17 2 1 19 19 N 1.47019 * 107.27354 * 22.19720 * 18 17 2 20 20 C 1.36936 * 125.64877 * 181.01831 * 19 18 17 21 21 H 1.08001 * 119.99568 * 173.86903 * 20 19 18 22 22 C 1.38811 * 119.99960 * 353.59852 * 20 19 18 23 23 N 1.31613 * 120.00006 * 6.82210 * 22 20 19 24 24 Si 1.86804 * 119.99735 * 186.82049 * 22 20 19 25 25 H 1.48502 * 109.46848 * 84.99251 * 24 22 20 26 26 H 1.48497 * 109.46828 * 204.98645 * 24 22 20 27 27 H 1.48495 * 109.47335 * 324.98728 * 24 22 20 28 28 C 1.47422 * 108.70180 * 1.28599 * 19 18 17 29 29 H 1.09005 * 109.47340 * 183.90417 * 1 2 3 30 30 H 1.09005 * 109.47185 * 303.90049 * 1 2 3 31 31 H 1.08996 * 109.47398 * 63.90354 * 1 2 3 32 32 H 0.97000 * 120.00246 * 236.09734 * 3 2 1 33 33 H 1.07996 * 119.99183 * 0.02562 * 7 6 4 34 34 H 1.07998 * 119.88257 * 180.25538 * 8 7 6 35 35 H 1.08000 * 119.88818 * 179.76406 * 9 8 7 36 36 H 1.09003 * 110.26530 * 263.86867 * 12 11 10 37 37 H 1.09001 * 110.26836 * 25.92487 * 12 11 10 38 38 H 1.07994 * 125.27202 * 163.04758 * 13 12 11 39 39 H 1.08005 * 125.27077 * 179.97438 * 14 13 12 40 40 H 1.08999 * 110.26710 * 334.07163 * 15 11 10 41 41 H 1.09001 * 110.26159 * 96.03408 * 15 11 10 42 42 H 1.07998 * 120.11503 * 179.97438 * 16 10 9 43 43 H 1.08999 * 110.72026 * 88.06142 * 17 2 1 44 44 H 1.08997 * 110.87320 * 324.85381 * 17 2 1 45 45 H 1.09003 * 109.88213 * 262.77456 * 18 17 2 46 46 H 1.09008 * 109.87965 * 141.61328 * 18 17 2 47 47 H 0.97002 * 120.00335 * 179.97438 * 23 22 20 48 48 H 1.08993 * 110.37221 * 94.48214 * 28 19 18 49 49 H 1.09007 * 110.36642 * 216.80718 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3684 0.0000 4 6 1.6854 2.2304 0.9688 5 8 0.9204 1.8721 1.8428 6 6 2.2128 3.6117 0.9684 7 6 3.0962 4.0239 -0.0311 8 6 3.5833 5.3149 -0.0320 9 6 3.2080 6.2011 0.9604 10 6 2.3333 5.7992 1.9630 11 7 1.9567 6.6986 2.9635 12 6 0.4896 6.9103 2.9627 13 6 0.1099 7.0880 4.4146 14 6 1.0797 6.6468 5.1761 15 6 2.2049 6.1301 4.3097 16 6 1.8337 4.5056 1.9695 17 6 2.0861 -0.8079 -1.2023 18 6 3.4674 -1.2741 -0.6961 19 7 3.4272 -1.2431 0.7733 20 6 4.4641 -1.5667 1.6071 21 1 4.3671 -1.4175 2.6723 22 6 5.6376 -2.0919 1.0837 23 7 5.8067 -2.1541 -0.2201 24 14 6.9767 -2.7103 2.2299 25 1 6.6879 -4.1149 2.6161 26 1 8.2889 -2.6473 1.5375 27 1 7.0179 -1.8606 3.4470 28 6 2.0836 -0.8120 1.2003 29 1 -0.3634 -1.0253 0.0700 30 1 -0.3634 0.5732 0.8530 31 1 -0.3634 0.4520 -0.9228 32 1 2.6638 1.6543 -0.6972 33 1 3.3951 3.3334 -0.8058 34 1 4.2633 5.6329 -0.8085 35 1 3.5955 7.2091 0.9565 36 1 0.2376 7.8056 2.3943 37 1 -0.0171 6.0410 2.5436 38 1 -0.8176 7.5125 4.7692 39 1 1.0762 6.6520 6.2561 40 1 2.1813 5.0411 4.2699 41 1 3.1662 6.4726 4.6928 42 1 1.1542 4.1910 2.7477 43 1 2.1921 -0.1700 -2.0797 44 1 1.4478 -1.6632 -1.4239 45 1 4.2425 -0.5997 -1.0601 46 1 3.6650 -2.2894 -1.0401 47 1 6.6269 -2.5207 -0.5859 48 1 1.4525 -1.6781 1.3987 49 1 2.1516 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046661479.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:50 Heat of formation + Delta-G solvation = 67.880325 kcal Electronic energy + Delta-G solvation = -29988.772918 eV Core-core repulsion = 26110.637180 eV Total energy + Delta-G solvation = -3878.135738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.85924 -39.83440 -38.12437 -37.02966 -34.01455 -33.18922 -31.98674 -31.11133 -29.91114 -28.73914 -28.66691 -28.53232 -25.67403 -24.33518 -23.58474 -23.41052 -21.28366 -20.63067 -20.11829 -19.65517 -18.99567 -18.16858 -16.90993 -16.46163 -16.17606 -15.85447 -15.43001 -14.75345 -14.64846 -14.59729 -14.41741 -13.96419 -13.78967 -13.72904 -13.28614 -13.10243 -13.04019 -12.80602 -12.53113 -12.21980 -12.02752 -11.98210 -11.86480 -11.76272 -11.65614 -11.57075 -11.42846 -10.92081 -10.87035 -10.41289 -10.37195 -10.10283 -10.04801 -9.95899 -9.65919 -9.33312 -9.06904 -8.87646 -8.65151 -8.63226 -8.51335 -6.79415 -5.72131 -3.03000 0.82364 1.10470 1.88198 2.96701 3.40168 3.41703 3.46502 3.47667 3.60361 3.83121 4.38796 4.51317 4.55508 4.71076 4.75614 4.96517 5.05440 5.11725 5.17351 5.21372 5.26175 5.30841 5.38546 5.43148 5.45024 5.47225 5.60815 5.63982 5.72262 5.75633 6.00828 6.06169 6.10818 6.14167 6.15659 6.16949 6.22071 6.25175 6.36174 6.39569 6.52024 6.53692 6.57089 6.68232 6.79979 7.09700 7.11274 7.50450 7.58882 7.79643 7.87705 8.26093 8.52517 9.23353 9.83519 10.50093 11.40353 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.003046 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.796349 B = 9189.212221 C = 9886.396923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 N -0.693 5.693 4 C 0.559 3.441 5 O -0.539 6.539 6 C -0.115 4.115 7 C -0.084 4.084 8 C -0.120 4.120 9 C -0.071 4.071 10 C 0.062 3.938 11 N -0.466 5.466 12 C 0.054 3.946 13 C -0.170 4.170 14 C -0.164 4.164 15 C 0.049 3.951 16 C -0.091 4.091 17 C -0.147 4.147 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.224 4.224 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.909 3.091 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.134 3.866 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.398 0.602 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.041 0.959 46 H 0.048 0.952 47 H 0.251 0.749 48 H 0.027 0.973 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 18.440 0.329 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.070 3.930 3 N -0.343 5.343 4 C 0.346 3.654 5 O -0.418 6.418 6 C -0.119 4.119 7 C -0.103 4.103 8 C -0.138 4.138 9 C -0.091 4.091 10 C -0.033 4.033 11 N -0.187 5.187 12 C -0.072 4.072 13 C -0.189 4.189 14 C -0.183 4.183 15 C -0.077 4.077 16 C -0.112 4.112 17 C -0.186 4.186 18 C 0.052 3.948 19 N -0.329 5.329 20 C -0.352 4.352 21 H 0.093 0.907 22 C -0.203 4.203 23 N -0.570 5.570 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.007 3.993 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.233 0.767 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.151 0.849 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.123 18.572 0.811 21.167 hybrid contribution 0.760 -1.051 0.365 1.348 sum -9.362 17.521 1.176 19.901 Atomic orbital electron populations 1.22041 0.94170 1.02442 1.02492 1.21544 0.92754 0.80528 0.98203 1.45723 1.48196 1.11794 1.28604 1.18129 0.81008 0.84616 0.81677 1.90695 1.36067 1.78313 1.36705 1.19958 1.00285 0.94388 0.97262 1.21427 0.95086 0.96396 0.97395 1.21065 1.00439 0.93234 0.99077 1.21115 0.95324 1.00044 0.92568 1.18919 0.99043 0.90284 0.95006 1.63327 1.14373 1.39522 1.01521 1.22221 0.87022 1.02223 0.95753 1.23546 0.99590 1.01010 0.94711 1.23573 0.95647 0.99373 0.99679 1.22279 0.99261 0.98833 0.87288 1.21712 0.98720 0.92908 0.97880 1.23231 1.00538 0.98953 0.95849 1.21168 0.89873 1.00014 0.83747 1.44430 1.07413 1.79306 1.01751 1.19036 0.92114 1.34550 0.89491 0.90658 1.24779 0.98191 1.01373 0.96001 1.69948 1.26568 1.51065 1.09436 0.86179 0.81148 0.79028 0.79719 1.21554 1.21746 1.20814 1.21908 0.87624 0.94856 0.94928 0.91842 0.90347 0.93224 0.76683 0.85269 0.84913 0.84978 0.89257 0.91644 0.84475 0.84425 0.91275 0.89084 0.84871 0.91783 0.90740 0.94095 0.93434 0.93828 0.95547 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.59 37.16 0.32 -2.07 16 2 C 0.16 2.79 0.82 -129.55 -0.11 2.68 16 3 N -0.69 -11.52 5.14 -46.44 -0.24 -11.76 16 4 C 0.56 9.62 7.16 -12.32 -0.09 9.53 16 5 O -0.54 -10.64 13.18 5.32 0.07 -10.57 16 6 C -0.12 -1.68 5.87 -104.99 -0.62 -2.29 16 7 C -0.08 -1.03 9.54 -39.16 -0.37 -1.40 16 8 C -0.12 -1.24 10.02 -39.67 -0.40 -1.64 16 9 C -0.07 -0.77 9.96 -39.30 -0.39 -1.16 16 10 C 0.06 0.74 4.91 -83.83 -0.41 0.33 16 11 N -0.47 -5.18 5.58 -171.20 -0.96 -6.13 16 12 C 0.05 0.52 6.47 -4.04 -0.03 0.50 16 13 C -0.17 -1.46 10.95 -35.81 -0.39 -1.85 16 14 C -0.16 -1.47 10.94 -35.81 -0.39 -1.86 16 15 C 0.05 0.52 6.44 -4.04 -0.03 0.50 16 16 C -0.09 -1.25 7.23 -38.97 -0.28 -1.54 16 17 C -0.15 -2.60 5.96 -24.89 -0.15 -2.75 16 18 C 0.18 4.14 5.37 -3.06 -0.02 4.13 16 19 N -0.60 -15.47 3.39 -169.93 -0.58 -16.04 16 20 C -0.22 -6.35 10.26 -15.06 -0.15 -6.51 16 21 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 22 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 23 N -0.92 -26.82 10.36 55.49 0.58 -26.25 16 24 Si 0.91 22.40 29.56 -169.99 -5.02 17.38 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 C 0.13 2.96 6.18 -2.41 -0.01 2.95 16 29 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.08 1.34 5.92 -51.93 -0.31 1.04 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 5.89 6.54 -40.82 -0.27 5.62 16 33 H 0.13 1.40 6.40 -52.49 -0.34 1.06 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.69 6.75 -51.93 -0.35 0.34 16 38 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.07 0.82 6.29 -51.93 -0.33 0.49 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.13 1.93 6.62 -52.49 -0.35 1.59 16 43 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 44 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 45 H 0.04 1.04 7.57 -51.93 -0.39 0.65 16 46 H 0.05 1.25 7.35 -51.92 -0.38 0.87 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.03 0.59 7.99 -51.93 -0.41 0.17 16 49 H 0.05 1.17 6.88 -51.93 -0.36 0.81 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -32.60 386.00 -11.19 -43.79 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.24 Total: 6.52 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -3.61 Total: -2.75 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -1.20 Total: -60.18 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.60 -11.19 -43.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046661479.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.673 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds