Wall clock time and date at job start Wed Apr 1 2020 00:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 110.91371 * 2 1 4 4 C 1.34781 * 120.00261 * 56.09978 * 3 2 1 5 5 O 1.21549 * 119.99649 * 0.02562 * 4 3 2 6 6 C 1.47856 * 120.00105 * 180.02562 * 4 3 2 7 7 C 1.39624 * 120.10947 * 359.72009 * 6 4 3 8 8 C 1.37983 * 120.00292 * 179.76656 * 7 6 4 9 9 C 1.38244 * 120.22741 * 0.51685 * 8 7 6 10 10 C 1.38984 * 120.22356 * 359.74132 * 9 8 7 11 11 N 1.39708 * 120.00728 * 180.02562 * 10 9 8 12 12 C 1.48226 * 111.00148 * 119.81705 * 11 10 9 13 13 C 1.51117 * 105.36352 * 144.90166 * 12 11 10 14 14 C 1.30962 * 109.45128 * 343.01817 * 13 12 11 15 15 C 1.48231 * 110.99793 * 233.45190 * 11 10 9 16 16 C 1.38679 * 119.98801 * 359.97438 * 10 9 8 17 17 C 1.55157 * 111.00012 * 236.09792 * 2 1 3 18 18 C 1.54326 * 102.93788 * 206.42019 * 17 2 1 19 19 N 1.47019 * 107.27354 * 22.19720 * 18 17 2 20 20 C 1.36936 * 125.64877 * 181.01831 * 19 18 17 21 21 H 1.08001 * 119.99568 * 173.86903 * 20 19 18 22 22 C 1.38811 * 119.99960 * 353.59852 * 20 19 18 23 23 N 1.31613 * 120.00006 * 6.82210 * 22 20 19 24 24 Si 1.86804 * 119.99735 * 186.82049 * 22 20 19 25 25 H 1.48502 * 109.46848 * 84.99251 * 24 22 20 26 26 H 1.48497 * 109.46828 * 204.98645 * 24 22 20 27 27 H 1.48495 * 109.47335 * 324.98728 * 24 22 20 28 28 C 1.47422 * 108.70180 * 1.28599 * 19 18 17 29 29 H 1.09005 * 109.47340 * 183.90417 * 1 2 3 30 30 H 1.09005 * 109.47185 * 303.90049 * 1 2 3 31 31 H 1.08996 * 109.47398 * 63.90354 * 1 2 3 32 32 H 0.97000 * 120.00246 * 236.09734 * 3 2 1 33 33 H 1.07996 * 119.99183 * 0.02562 * 7 6 4 34 34 H 1.07998 * 119.88257 * 180.25538 * 8 7 6 35 35 H 1.08000 * 119.88818 * 179.76406 * 9 8 7 36 36 H 1.09003 * 110.26530 * 263.86867 * 12 11 10 37 37 H 1.09001 * 110.26836 * 25.92487 * 12 11 10 38 38 H 1.07994 * 125.27202 * 163.04758 * 13 12 11 39 39 H 1.08005 * 125.27077 * 179.97438 * 14 13 12 40 40 H 1.08999 * 110.26710 * 334.07163 * 15 11 10 41 41 H 1.09001 * 110.26159 * 96.03408 * 15 11 10 42 42 H 1.07998 * 120.11503 * 179.97438 * 16 10 9 43 43 H 1.08999 * 110.72026 * 88.06142 * 17 2 1 44 44 H 1.08997 * 110.87320 * 324.85381 * 17 2 1 45 45 H 1.09003 * 109.88213 * 262.77456 * 18 17 2 46 46 H 1.09008 * 109.87965 * 141.61328 * 18 17 2 47 47 H 0.97002 * 120.00335 * 179.97438 * 23 22 20 48 48 H 1.08993 * 110.37221 * 94.48214 * 28 19 18 49 49 H 1.09007 * 110.36642 * 216.80718 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3684 0.0000 4 6 1.6854 2.2304 0.9688 5 8 0.9204 1.8721 1.8428 6 6 2.2128 3.6117 0.9684 7 6 3.0962 4.0239 -0.0311 8 6 3.5833 5.3149 -0.0320 9 6 3.2080 6.2011 0.9604 10 6 2.3333 5.7992 1.9630 11 7 1.9567 6.6986 2.9635 12 6 0.4896 6.9103 2.9627 13 6 0.1099 7.0880 4.4146 14 6 1.0797 6.6468 5.1761 15 6 2.2049 6.1301 4.3097 16 6 1.8337 4.5056 1.9695 17 6 2.0861 -0.8079 -1.2023 18 6 3.4674 -1.2741 -0.6961 19 7 3.4272 -1.2431 0.7733 20 6 4.4641 -1.5667 1.6071 21 1 4.3671 -1.4175 2.6723 22 6 5.6376 -2.0919 1.0837 23 7 5.8067 -2.1541 -0.2201 24 14 6.9767 -2.7103 2.2299 25 1 6.6879 -4.1149 2.6161 26 1 8.2889 -2.6473 1.5375 27 1 7.0179 -1.8606 3.4470 28 6 2.0836 -0.8120 1.2003 29 1 -0.3634 -1.0253 0.0700 30 1 -0.3634 0.5732 0.8530 31 1 -0.3634 0.4520 -0.9228 32 1 2.6638 1.6543 -0.6972 33 1 3.3951 3.3334 -0.8058 34 1 4.2633 5.6329 -0.8085 35 1 3.5955 7.2091 0.9565 36 1 0.2376 7.8056 2.3943 37 1 -0.0171 6.0410 2.5436 38 1 -0.8176 7.5125 4.7692 39 1 1.0762 6.6520 6.2561 40 1 2.1813 5.0411 4.2699 41 1 3.1662 6.4726 4.6928 42 1 1.1542 4.1910 2.7477 43 1 2.1921 -0.1700 -2.0797 44 1 1.4478 -1.6632 -1.4239 45 1 4.2425 -0.5997 -1.0601 46 1 3.6650 -2.2894 -1.0401 47 1 6.6269 -2.5207 -0.5859 48 1 1.4525 -1.6781 1.3987 49 1 2.1516 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046661479.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:49 Heat of formation + Delta-G solvation = 47.300637 kcal Electronic energy + Delta-G solvation = -29989.665320 eV Core-core repulsion = 26110.637180 eV Total energy + Delta-G solvation = -3879.028140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.85865 -41.07249 -39.30403 -38.39688 -35.73190 -34.26681 -33.46338 -32.37930 -31.44113 -30.35717 -29.48948 -29.44673 -27.54386 -25.73047 -24.94694 -24.44558 -22.37330 -22.08001 -21.60067 -20.42245 -20.36211 -19.37139 -18.73424 -17.43552 -17.30595 -17.02801 -16.79220 -16.53608 -16.11240 -15.62689 -15.59325 -15.53836 -15.01199 -14.77643 -14.74961 -14.26965 -13.98612 -13.93162 -13.89318 -13.57123 -13.44674 -13.25244 -13.17652 -12.94464 -12.84964 -12.81590 -12.76519 -12.37892 -12.29046 -12.15906 -12.06991 -11.99833 -11.72330 -11.60399 -10.88994 -10.71704 -10.60260 -10.16931 -9.95058 -9.77597 -9.46268 -8.87659 -7.89308 -5.22042 -0.19761 0.17024 1.19175 1.42256 1.44263 1.52022 1.80777 2.13472 2.46301 2.75427 2.77460 3.28786 3.49078 3.61953 3.65060 3.74614 3.84186 3.86489 4.00504 4.01371 4.16113 4.18321 4.27901 4.41943 4.47442 4.49043 4.57578 4.61077 4.65983 4.67610 4.75366 4.79457 4.82994 4.89482 4.93694 4.98915 5.05601 5.20558 5.27375 5.32539 5.34388 5.36589 5.38904 5.40384 5.59616 5.65747 5.69927 5.74409 5.84369 6.17808 6.19455 6.56631 7.09463 7.20817 7.74608 8.39691 9.20871 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.003046 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.796349 B = 9189.212221 C = 9886.396923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.166 3.834 3 N -0.691 5.691 4 C 0.555 3.445 5 O -0.573 6.573 6 C -0.139 4.139 7 C -0.087 4.087 8 C -0.109 4.109 9 C -0.066 4.066 10 C 0.058 3.942 11 N -0.468 5.468 12 C 0.048 3.952 13 C -0.167 4.167 14 C -0.173 4.173 15 C 0.044 3.956 16 C -0.101 4.101 17 C -0.128 4.128 18 C 0.184 3.816 19 N -0.620 5.620 20 C -0.246 4.246 21 H 0.065 0.935 22 C -0.054 4.054 23 N -0.941 5.941 24 Si 0.972 3.028 25 H -0.285 1.285 26 H -0.288 1.288 27 H -0.277 1.277 28 C 0.131 3.869 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.407 0.593 33 H 0.142 0.858 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.016 0.984 46 H 0.014 0.986 47 H 0.249 0.751 48 H 0.027 0.973 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.264 20.348 -0.675 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.079 3.921 3 N -0.341 5.341 4 C 0.343 3.657 5 O -0.454 6.454 6 C -0.142 4.142 7 C -0.106 4.106 8 C -0.128 4.128 9 C -0.084 4.084 10 C -0.036 4.036 11 N -0.189 5.189 12 C -0.077 4.077 13 C -0.185 4.185 14 C -0.191 4.191 15 C -0.082 4.082 16 C -0.122 4.122 17 C -0.167 4.167 18 C 0.060 3.940 19 N -0.346 5.346 20 C -0.375 4.375 21 H 0.083 0.917 22 C -0.248 4.248 23 N -0.590 5.590 24 Si 0.800 3.200 25 H -0.212 1.212 26 H -0.214 1.214 27 H -0.203 1.203 28 C 0.005 3.995 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.244 0.756 33 H 0.160 0.840 34 H 0.185 0.815 35 H 0.174 0.826 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.034 0.966 46 H 0.032 0.968 47 H 0.058 0.942 48 H 0.044 0.956 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.277 20.496 -0.206 22.929 hybrid contribution 0.820 -1.601 0.720 1.937 sum -9.457 18.895 0.513 21.136 Atomic orbital electron populations 1.21962 0.91915 1.03197 1.03113 1.21420 0.94212 0.80641 0.95829 1.45686 1.48345 1.11187 1.28887 1.18594 0.80396 0.85674 0.81020 1.90670 1.37664 1.79188 1.37917 1.19860 1.02223 0.93119 0.99032 1.21627 0.94418 0.97627 0.96899 1.21441 0.99864 0.92061 0.99393 1.21460 0.94105 1.01169 0.91696 1.19090 0.99181 0.89676 0.95690 1.63423 1.15200 1.38842 1.01423 1.22313 0.86236 1.02219 0.96950 1.23787 1.00361 1.00582 0.93794 1.23733 0.95131 0.99659 1.00615 1.22316 1.00431 0.97679 0.87766 1.21621 0.99136 0.93885 0.97556 1.23111 0.96925 1.00057 0.96564 1.20970 0.92800 0.97661 0.82589 1.44664 1.08040 1.79267 1.02668 1.19266 0.93437 1.35107 0.89713 0.91664 1.25518 1.00176 1.01602 0.97533 1.70132 1.26847 1.51334 1.10650 0.85208 0.78415 0.78353 0.78030 1.21178 1.21400 1.20270 1.22006 0.86489 0.95001 0.96034 0.90686 0.92107 0.90516 0.75576 0.84024 0.81451 0.82612 0.87900 0.92928 0.82005 0.82457 0.93429 0.88671 0.86857 0.88267 0.88862 0.96582 0.96814 0.94168 0.95580 0.96022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.59 71.98 0.62 -3.65 16 2 C 0.17 5.82 0.82 5.08 0.00 5.82 16 3 N -0.69 -22.75 5.14 -419.11 -2.15 -24.90 16 4 C 0.55 19.56 7.16 86.79 0.62 20.18 16 5 O -0.57 -23.72 13.18 -3.87 -0.05 -23.77 16 6 C -0.14 -4.09 5.87 -20.10 -0.12 -4.20 16 7 C -0.09 -2.00 9.54 22.54 0.22 -1.79 16 8 C -0.11 -1.97 10.02 22.21 0.22 -1.74 16 9 C -0.07 -1.25 9.96 22.45 0.22 -1.03 16 10 C 0.06 1.37 4.91 38.17 0.19 1.55 16 11 N -0.47 -10.10 5.58 -695.55 -3.88 -13.98 16 12 C 0.05 0.91 6.47 85.43 0.55 1.47 16 13 C -0.17 -2.66 10.95 25.82 0.28 -2.38 16 14 C -0.17 -2.96 10.94 25.82 0.28 -2.68 16 15 C 0.04 0.94 6.44 85.43 0.55 1.49 16 16 C -0.10 -2.87 7.23 22.67 0.16 -2.71 16 17 C -0.13 -4.31 5.96 31.78 0.19 -4.12 16 18 C 0.18 8.76 5.37 86.73 0.47 9.22 16 19 N -0.62 -32.71 3.39 -691.54 -2.35 -35.06 16 20 C -0.25 -14.41 10.26 84.03 0.86 -13.55 16 21 H 0.07 3.83 7.84 -2.91 -0.02 3.81 16 22 C -0.05 -3.14 5.48 84.86 0.47 -2.67 16 23 N -0.94 -55.74 10.36 21.65 0.22 -55.52 16 24 Si 0.97 46.69 29.56 68.60 2.03 48.72 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 C 0.13 5.96 6.18 86.93 0.54 6.49 16 29 H 0.07 2.05 8.07 -2.38 -0.02 2.03 16 30 H 0.06 2.07 5.92 -2.38 -0.01 2.05 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.41 11.64 6.54 -92.71 -0.61 11.03 16 33 H 0.14 2.82 6.40 -2.91 -0.02 2.80 16 34 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.05 1.14 6.75 -2.39 -0.02 1.12 16 38 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.05 1.21 6.29 -2.39 -0.02 1.20 16 41 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.11 3.59 6.62 -2.91 -0.02 3.57 16 43 H 0.10 2.68 8.09 -2.39 -0.02 2.66 16 44 H 0.09 2.84 8.04 -2.39 -0.02 2.82 16 45 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 46 H 0.01 0.73 7.35 -2.38 -0.02 0.72 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.03 1.19 7.99 -2.39 -0.02 1.17 16 49 H 0.02 1.08 6.88 -2.38 -0.02 1.07 16 Total: -1.00 -73.78 386.00 0.50 -73.28 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.36 Total: 25.52 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 6.33 Total: 5.71 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -8.16 Total: -129.46 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -73.78 0.50 -73.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046661479.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.577 kcal (2) G-P(sol) polarization free energy of solvation -73.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds